##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088356_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 458448 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.645349090845635 31.0 30.0 31.0 27.0 34.0 2 30.841118294768435 31.0 31.0 33.0 27.0 34.0 3 30.807899696366874 31.0 30.0 34.0 27.0 34.0 4 34.643508096883394 35.0 35.0 37.0 32.0 37.0 5 34.38689229749066 35.0 35.0 37.0 30.0 37.0 6 34.60352319128887 35.0 35.0 37.0 31.0 37.0 7 34.45361087844205 35.0 35.0 37.0 30.0 37.0 8 34.574226520783164 35.0 35.0 37.0 30.0 37.0 9 35.93341883921404 37.0 35.0 39.0 30.0 39.0 10 35.680570097372005 37.0 35.0 39.0 30.0 39.0 11 35.94325201549576 37.0 35.0 39.0 30.0 39.0 12 35.689295187240425 37.0 35.0 39.0 30.0 39.0 13 35.830896851987575 37.0 35.0 39.0 30.0 39.0 14 36.589938226363735 38.0 35.0 40.0 30.0 41.0 15 36.64031689526402 38.0 35.0 40.0 30.0 41.0 16 36.50282692911737 38.0 35.0 40.0 30.0 41.0 17 36.60404451540851 38.0 35.0 40.0 30.0 41.0 18 36.59698155516002 38.0 35.0 40.0 30.0 41.0 19 36.69652174292395 38.0 35.0 40.0 30.0 41.0 20 36.669360538163545 38.0 35.0 40.0 30.0 41.0 21 36.654141800160545 38.0 35.0 40.0 30.0 41.0 22 36.515013698391094 38.0 35.0 40.0 30.0 41.0 23 36.37844422922556 38.0 35.0 40.0 30.0 41.0 24 36.27760182179876 38.0 35.0 40.0 30.0 41.0 25 36.186522789934735 38.0 34.0 40.0 30.0 41.0 26 35.8997945241336 38.0 34.0 40.0 29.0 41.0 27 35.68631775032283 38.0 34.0 40.0 27.0 41.0 28 35.532564216661434 38.0 34.0 40.0 27.0 41.0 29 35.349636163752486 38.0 34.0 40.0 27.0 41.0 30 35.09371837154923 37.0 33.0 40.0 27.0 41.0 31 34.804291871706276 37.0 33.0 40.0 26.0 41.0 32 34.663870275363834 37.0 33.0 40.0 25.0 41.0 33 34.709306180853666 37.0 33.0 40.0 25.0 41.0 34 34.64066589885876 37.0 33.0 40.0 25.0 41.0 35 34.49241571563187 37.0 33.0 40.0 25.0 41.0 36 34.3526528635745 37.0 33.0 40.0 24.0 41.0 37 34.196303615677245 37.0 33.0 40.0 24.0 41.0 38 34.04948216591631 37.0 33.0 40.0 23.0 41.0 39 33.884348933794016 37.0 33.0 40.0 22.0 41.0 40 33.65496413988064 37.0 32.0 40.0 21.0 41.0 41 33.454771315394545 37.0 32.0 40.0 19.0 41.0 42 33.21785022510732 37.0 31.0 40.0 18.0 41.0 43 32.811018915994836 36.0 31.0 40.0 16.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 4.0 14 3.0 15 4.0 16 12.0 17 36.0 18 82.0 19 165.0 20 378.0 21 649.0 22 1143.0 23 1957.0 24 3076.0 25 4464.0 26 6227.0 27 8642.0 28 11494.0 29 14792.0 30 18329.0 31 21670.0 32 25744.0 33 30874.0 34 36442.0 35 43776.0 36 55353.0 37 68693.0 38 71538.0 39 32901.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.71693190939867 25.927913307507065 15.659573168603636 19.695581614490628 2 21.79462010958713 25.959105503786688 31.22295222140788 21.023322165218303 3 24.018863644295536 25.447815237496947 31.656371060621925 18.876950057585592 4 17.225508672739327 18.965727846996824 32.415672006421666 31.393091473842183 5 11.61593026908177 42.360747565699924 33.217944019823406 12.805378145394897 6 31.914415593480612 37.273147663420936 14.25919624472132 16.553240498377132 7 23.02420339929501 36.57797612815412 22.038486371409626 18.359334101141243 8 27.543145569399364 34.91999092590653 20.167827103619167 17.36903640107493 9 24.721887760443934 13.627935992740724 24.038495096499492 37.61168115031585 10 16.969209157854326 29.599867378634 33.121749904024014 20.30917355948766 11 32.270399260112384 22.50636931560395 23.742060168219734 21.481171256063938 12 18.706810805151296 29.653308554078105 31.775904791819354 19.86397584895124 13 30.787570236973437 21.29096429693226 29.248028129689736 18.673437336404564 14 20.224540187763935 23.566467734617667 29.962176735420375 26.246815342198026 15 23.46285729243011 30.153910585279025 26.492644749240917 19.890587373049943 16 21.132603915820333 28.12118277318256 28.87895682825533 21.867256482741773 17 19.081335287753465 28.40562070289324 29.78462115659791 22.728422852755383 18 19.63843227585244 25.841971172303076 33.50652636722158 21.0130701846229 19 19.545510068753707 25.52634104631278 35.38111192545283 19.547036959480682 20 22.327504973301224 24.75198932049 34.40368373294245 18.516821973266325 21 22.384436184692703 24.910349701601927 33.18369804208983 19.521516071615537 22 21.11035493665585 25.15945101734548 33.66401423934667 20.06617980665201 23 20.263148710431718 26.849282797612815 34.20017101176142 18.687397480194047 24 19.194543328796286 26.141023627543365 33.36692492932677 21.297508114333578 25 19.902366244372317 26.729967193662098 33.954995986458655 19.412670575506926 26 20.678026733675356 26.057044637559766 33.07049000104701 20.194438627717865 27 20.65817715422469 26.79889540362266 32.79063274351726 19.752294698635396 28 20.107842110773742 27.135247618050467 33.02773706069173 19.72917321048407 29 19.248638885980526 26.505950511290266 33.707857815935505 20.537552786793704 30 18.908142253865215 26.977541618678675 34.77580881583081 19.33850731162531 31 19.82776672599728 26.298947754161865 33.81910271175793 20.054182808082924 32 20.062035388964507 27.196105119882734 32.58864691306321 20.153212578089555 33 20.872378110494537 27.04865110110634 31.960658569783266 20.118312218615852 34 20.265329982898823 28.34061878337347 32.217612466408404 19.176438767319304 35 19.122561337381775 28.816790562942796 32.40781942554008 19.652828674135346 36 19.809007782780164 26.568989285589637 33.6912801451855 19.9307227864447 37 19.65762747356298 26.829215090915437 33.18413429658326 20.329023138938332 38 20.146232506194814 26.475412696750777 33.118914249816775 20.259440547237638 39 20.84969287683663 26.3303580776882 32.908639583987714 19.911309461487452 40 19.68249397968799 26.767921334589744 32.41087320699403 21.13871147872823 41 19.97151258157959 26.440076082783655 32.520809339336196 21.06760199630056 42 18.439823055177467 27.736406309984996 32.03198617945765 21.79178445537989 43 18.853828569434263 27.235149897043943 31.98748822112868 21.92353331239312 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 94.0 1 88.5 2 83.0 3 181.0 4 279.0 5 279.0 6 570.0 7 861.0 8 1030.5 9 1200.0 10 1816.0 11 2432.0 12 2432.0 13 4682.0 14 6932.0 15 11626.5 16 16321.0 17 14542.0 18 12763.0 19 12763.0 20 15056.0 21 17349.0 22 13672.0 23 9995.0 24 10756.5 25 11518.0 26 11518.0 27 12110.5 28 12703.0 29 13133.0 30 13563.0 31 14481.5 32 15400.0 33 15400.0 34 16589.0 35 17778.0 36 19189.5 37 20601.0 38 21611.0 39 22621.0 40 22621.0 41 23784.0 42 24947.0 43 27357.0 44 29767.0 45 34857.0 46 39947.0 47 39947.0 48 40812.5 49 41678.0 50 37518.5 51 33359.0 52 30984.0 53 28609.0 54 28609.0 55 24758.0 56 20907.0 57 18303.0 58 15699.0 59 13868.0 60 12037.0 61 12037.0 62 10587.5 63 9138.0 64 7984.5 65 6831.0 66 5794.5 67 4758.0 68 4758.0 69 3974.5 70 3191.0 71 2713.0 72 2235.0 73 1758.5 74 1282.0 75 1282.0 76 984.5 77 687.0 78 511.5 79 336.0 80 301.5 81 267.0 82 267.0 83 194.5 84 122.0 85 97.5 86 73.0 87 57.5 88 42.0 89 42.0 90 35.0 91 28.0 92 18.0 93 8.0 94 7.0 95 6.0 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 458448.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.74003716044977 #Duplication Level Percentage of deduplicated Percentage of total 1 85.35105921025156 50.13524389693925 2 8.5702322407547 10.068315205912318 3 2.365582658625645 4.168632398213578 4 1.050743183679868 2.4688277462177903 5 0.5837101982742987 1.7143579368782902 6 0.3913538623555894 1.379288425059172 7 0.2560196760180099 1.052702369817295 8 0.19699622890393265 0.9257252645028379 9 0.1549250327794203 0.8190271964292343 >10 0.9581052936765094 10.67966122943324 >50 0.06828569811813699 2.8018550884088573 >100 0.045523798736632565 5.361290421061437 >500 0.0037314589128387347 1.6094830564944453 >1k 0.002985167130270988 3.2895440163242045 >5k 7.46291782567747E-4 3.5260457483080674 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 8229 1.7949691131818657 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 7858 1.7140439046522178 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 4553 0.9931333542735491 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2624 0.5723658953687223 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 1565 0.3413691411021534 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 1484 0.3237008341185914 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 1429 0.31170383554950615 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1136 0.24779255226328833 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 1130 0.2464837887830245 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1087 0.2371043171744669 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 964 0.21027466582905804 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 929 0.2026402121941856 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 907 0.19784141276655148 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 807 0.17602868809548738 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 741 0.16163228981258507 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 654 0.1426552193487593 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 644 0.14047394688165288 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 589 0.12847694831256762 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 588 0.12825882106585698 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 520 0.11342616828953338 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 492 0.10731860538163542 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 481 0.10491920566781839 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 474 0.10339231494084389 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 4.3625449342128225E-4 0.0 16 0.0 0.0 0.0 8.725089868425645E-4 0.0 17 0.0 0.0 0.0 0.001526890726974488 0.0 18 0.0 0.0 0.0 0.001745017973685129 0.0 19 0.0 0.0 0.0 0.0023993997138170523 0.0 20 0.0 0.0 0.0 0.003053781453948976 0.0 21 0.0 0.0 0.0 0.0050169266743447455 0.0 22 0.0 0.0 0.0 0.008725089868425644 0.0 23 0.0 0.0 0.0 0.012433253062506543 0.0 24 0.0 0.0 0.0 0.020067706697378982 0.0 25 0.0 0.0 0.0 0.02508463337172373 0.0 26 0.0 0.0 0.0 0.032064705266464245 0.0 27 0.0 0.0 0.0 0.08354273549017555 0.0 28 0.0 0.0 0.0 0.13720203818099327 0.0 29 0.0 0.0 0.0 0.19435137681918124 0.0 30 0.0 0.0 0.0 0.30777754510871463 0.0 31 0.0 0.0 0.0 0.4971119952535511 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGGA 25 0.005492939 29.6 22 GGTATCA 1885 0.0 28.755968 1 TTAGAGT 50 9.0755275E-6 25.900002 4 GTATCAA 2640 0.0 20.532196 2 TAGAGTG 65 6.890569E-5 19.923075 5 AGTACTG 145 7.2759576E-12 19.13793 5 GGTAATA 70 1.2171697E-4 18.5 2 CGTCTGT 80 1.6132175E-5 18.5 34 TTATCTA 50 0.0070285886 18.5 4 ATACTCT 50 0.0070285886 18.5 4 TGTGAAC 50 0.0070285886 18.5 3 GTACTGT 50 0.0070285886 18.5 6 CCGGTCG 50 0.0070285886 18.5 28 ATACGGA 50 0.0070285886 18.5 29 TAGTAGT 50 0.0070285886 18.5 4 TGCGTCT 80 1.6132175E-5 18.5 32 TAGAGTC 65 0.0015779763 17.076921 5 ATTAGAG 65 0.0015779763 17.076921 3 ACACCGC 65 0.0015779763 17.076921 6 CCGTGAA 65 0.0015779763 17.076921 9 >>END_MODULE