##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088349_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3418479 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.796860826115942 31.0 31.0 33.0 28.0 34.0 2 31.10928164250826 31.0 31.0 34.0 28.0 34.0 3 31.17222513287342 31.0 31.0 34.0 28.0 34.0 4 35.07106464600192 35.0 35.0 37.0 32.0 37.0 5 34.77347527950296 35.0 35.0 37.0 32.0 37.0 6 34.85796139160135 35.0 35.0 37.0 32.0 37.0 7 34.67677554842373 35.0 35.0 37.0 31.0 37.0 8 34.73898362400354 35.0 35.0 37.0 31.0 37.0 9 36.201832744913744 38.0 35.0 39.0 32.0 39.0 10 35.97734489520047 37.0 35.0 39.0 30.0 39.0 11 36.09789909488986 38.0 35.0 39.0 31.0 39.0 12 35.84260309921459 37.0 35.0 39.0 30.0 39.0 13 35.93806573040232 37.0 35.0 39.0 30.0 39.0 14 36.70299744418497 38.0 36.0 40.0 30.0 41.0 15 36.83806336092748 38.0 36.0 40.0 31.0 41.0 16 36.81579439276942 38.0 36.0 40.0 31.0 41.0 17 36.896948321168566 38.0 36.0 40.0 31.0 41.0 18 36.8972490397045 38.0 36.0 40.0 31.0 41.0 19 36.99267100953377 39.0 36.0 40.0 31.0 41.0 20 36.98408151695535 39.0 36.0 40.0 31.0 41.0 21 36.896407437342745 39.0 36.0 40.0 31.0 41.0 22 36.82688060976826 39.0 35.0 40.0 30.0 41.0 23 36.718994324668955 38.0 35.0 40.0 30.0 41.0 24 36.63551684828253 38.0 35.0 40.0 30.0 41.0 25 36.51657944951541 38.0 35.0 40.0 30.0 41.0 26 36.266756940732996 38.0 35.0 40.0 30.0 41.0 27 36.121762046805024 38.0 34.0 40.0 30.0 41.0 28 35.96324827503694 38.0 34.0 40.0 29.0 41.0 29 35.76165072244118 38.0 34.0 40.0 28.0 41.0 30 35.54973220546331 38.0 34.0 40.0 27.0 41.0 31 35.3227037521658 38.0 34.0 40.0 27.0 41.0 32 35.20656350382729 37.0 34.0 40.0 27.0 41.0 33 35.03552486354312 37.0 33.0 40.0 26.0 41.0 34 35.19452686414046 38.0 33.0 40.0 27.0 41.0 35 35.13185747228519 38.0 33.0 40.0 26.0 41.0 36 35.06222065427344 38.0 33.0 40.0 26.0 41.0 37 34.94901621452114 38.0 33.0 40.0 25.0 41.0 38 34.91056314811353 38.0 33.0 40.0 25.0 41.0 39 34.81310138222291 38.0 33.0 40.0 24.0 41.0 40 34.62774731101171 38.0 33.0 40.0 24.0 41.0 41 34.51103721859926 38.0 33.0 40.0 23.0 41.0 42 34.36481166039049 38.0 33.0 40.0 23.0 41.0 43 34.00216061002569 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 7.0 15 14.0 16 43.0 17 133.0 18 344.0 19 755.0 20 1518.0 21 3209.0 22 5837.0 23 9969.0 24 16316.0 25 25657.0 26 37798.0 27 54510.0 28 75306.0 29 99535.0 30 125592.0 31 153033.0 32 183360.0 33 219765.0 34 259551.0 35 305848.0 36 370117.0 37 456875.0 38 545749.0 39 467637.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.036285143187946 22.754242456952348 14.349217883157978 22.860254516701726 2 18.59631140047957 24.144773157886885 35.32073767309964 21.9381777685339 3 19.789532128177473 25.38055667447423 33.05654356806053 21.773367629287762 4 13.693341395398361 16.88113339295049 36.644747561708 32.78077764994315 5 12.07759357304813 38.77610481152583 35.605513446184695 13.540788169241349 6 31.442463153934835 37.737894543157935 13.99028632324493 16.8293559796623 7 24.589122823337515 34.10174524986112 22.29494462303264 19.014187303768722 8 26.029675771008097 34.81469390334122 19.852718124054586 19.30291220159609 9 24.001493061680357 14.557058855707467 23.085413132565684 38.3560349500465 10 15.59304591310931 27.747925320003432 34.96844649330887 21.690582273578396 11 32.064289410582894 22.73320971110251 24.742378116115383 20.460122762199212 12 20.6485983971234 27.27324052597661 31.9111511289085 20.16700994799149 13 31.137239690517333 21.521793756814066 27.488014406407057 19.85295214626154 14 19.94044719888582 23.508642293838868 28.749394101879812 27.8015164053955 15 21.55996862932316 29.987342323881467 26.74809469357571 21.704594353219665 16 20.99053409425654 29.046543799157458 27.81933134589974 22.14359076068626 17 20.782312835620754 27.132856454581116 27.924846108459345 24.15998460133878 18 22.46425968976261 25.811742590783798 30.943176775402158 20.780820944051435 19 21.726621693449047 25.2318940675078 32.21292276477345 20.828561474269698 20 22.887927642673834 24.712686548608314 32.123906567803985 20.275479240913867 21 21.85469034620368 25.47214711572018 32.64364063666911 20.02952190140703 22 20.182367655322732 25.78804784232988 32.20900289280701 21.820581609540383 23 21.518400434813262 26.117697373598027 33.026822747777594 19.337079443811124 24 21.2997651879681 25.96271616704388 30.75859175966855 21.978926885319467 25 21.144813234189826 26.656826032864323 31.60525485164601 20.59310588129984 26 20.851963694964926 27.229273603845456 31.446090498142592 20.472672203047026 27 19.613956967411532 27.348888204373935 31.250769713665054 21.786385114549482 28 20.468781583856448 26.779453669307312 31.20583744993022 21.545927296906022 29 20.41934439263778 26.626812684822692 30.639854742416144 22.31398818012338 30 20.87387402409083 26.96836809586954 32.17229065909137 19.985467220948262 31 21.888974599522186 26.547537662217614 31.75400521694005 19.809482521320156 32 21.179945818008537 26.737329672055903 30.72963151155821 21.35309299837735 33 20.86088579160498 26.565996163790974 31.364767781226682 21.20835026337737 34 19.922690763933318 27.316768656469737 32.171968878556804 20.58857170104014 35 19.482056201018054 29.424343399506036 30.814640078233623 20.278960321242284 36 21.812946635038564 26.9761493342507 30.538757149012763 20.672146881697973 37 21.065450453257135 27.88942099688195 30.284170240624558 20.76095830923636 38 20.831077212994433 26.25500990352727 31.634917166377207 21.278995717101086 39 20.428471258708917 25.910880248203956 32.44457549688034 21.21607299620679 40 19.088577112803677 26.45182257957413 32.03916127611139 22.420439031510796 41 20.80363810922928 25.48785585636185 32.024242360418185 21.684263673990685 42 19.320610130996858 27.716917377582252 31.406628503495266 21.555843987925623 43 19.77546154298447 27.755355525074165 30.311550838837974 22.157632093103395 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 307.0 1 413.5 2 520.0 3 1348.0 4 2176.0 5 2176.0 6 3750.0 7 5324.0 8 5938.5 9 6553.0 10 10473.5 11 14394.0 12 14394.0 13 26539.5 14 38685.0 15 62209.5 16 85734.0 17 84152.5 18 82571.0 19 82571.0 20 89000.0 21 95429.0 22 81187.0 23 66945.0 24 73858.0 25 80771.0 26 80771.0 27 87903.5 28 95036.0 29 99599.0 30 104162.0 31 112996.0 32 121830.0 33 121830.0 34 132067.0 35 142304.0 36 153018.0 37 163732.0 38 168729.0 39 173726.0 40 173726.0 41 178172.0 42 182618.0 43 187599.5 44 192581.0 45 207411.0 46 222241.0 47 222241.0 48 295120.0 49 367999.0 50 336925.5 51 305852.0 52 274325.5 53 242799.0 54 242799.0 55 211057.0 56 179315.0 57 151085.5 58 122856.0 59 108207.5 60 93559.0 61 93559.0 62 81754.0 63 69949.0 64 60697.5 65 51446.0 66 44183.0 67 36920.0 68 36920.0 69 31016.0 70 25112.0 71 21583.5 72 18055.0 73 14827.0 74 11599.0 75 11599.0 76 9363.5 77 7128.0 78 5563.0 79 3998.0 80 3075.5 81 2153.0 82 2153.0 83 1636.0 84 1119.0 85 865.5 86 612.0 87 421.5 88 231.0 89 231.0 90 162.0 91 93.0 92 62.0 93 31.0 94 21.0 95 11.0 96 11.0 97 7.0 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3418479.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.10342912757003 #Duplication Level Percentage of deduplicated Percentage of total 1 72.2392011875682 30.415180874330506 2 14.171048147633062 11.932994426945022 3 5.494274829656584 6.939834326935136 4 2.743101564126904 4.619759291797744 5 1.434387761202717 3.0196321722626216 6 0.9122447138183087 2.3045178393149737 7 0.5722550803838337 1.686573085388284 8 0.37677483165545606 1.26908099373261 9 0.27704374896263706 1.0498042664716223 >10 1.529671908090144 12.080700662022476 >50 0.14243194097671574 4.171736143663127 >100 0.09391777882864055 7.336712782692177 >500 0.007068190855543076 1.9996620996605183 >1k 0.0055985670137468435 5.0193092121149165 >5k 4.198925260310133E-4 1.2448018848611901 >10k+ 5.598567013746844E-4 4.909699937807069 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 39002 1.14091676444407 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 38014 1.1120150218854643 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32367 0.9468245965530284 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14046 0.41088448985645376 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11057 0.32344794278391065 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10999 0.32175128178350665 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 10800 0.3159299793855689 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 10344 0.3025907135892893 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 9780 0.286092147999154 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9377 0.2743032793239333 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6383 0.186720468372045 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6109 0.17870520778392962 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5409 0.15822826467560572 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5189 0.1517926539844182 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4946 0.1446842294482429 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4706 0.1376635632396747 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4696 0.1373710354809844 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4068 0.11900029223523093 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3980 0.11642604795875591 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3876 0.11338375926837638 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3800 0.11116054830232978 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3753 0.10978566783648519 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3518 0.10291126550726215 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3437 0.10054179066187037 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.925277586903415E-5 0.0 0.0 0.0 0.0 3 2.925277586903415E-5 0.0 0.0 5.85055517380683E-5 0.0 4 2.925277586903415E-5 0.0 0.0 8.775832760710245E-5 0.0 5 5.85055517380683E-5 2.925277586903415E-5 0.0 8.775832760710245E-5 0.0 6 1.170111034761366E-4 2.925277586903415E-5 0.0 8.775832760710245E-5 0.0 7 1.170111034761366E-4 2.925277586903415E-5 0.0 8.775832760710245E-5 0.0 8 1.755166552142049E-4 2.925277586903415E-5 0.0 8.775832760710245E-5 0.0 9 1.755166552142049E-4 2.925277586903415E-5 0.0 1.755166552142049E-4 0.0 10 1.755166552142049E-4 2.925277586903415E-5 0.0 2.925277586903415E-4 0.0 11 1.755166552142049E-4 8.775832760710245E-5 0.0 4.095388621664781E-4 0.0 12 1.755166552142049E-4 8.775832760710245E-5 0.0 6.435610691187514E-4 0.0 13 2.0476943108323906E-4 8.775832760710245E-5 0.0 7.60572172594888E-4 0.0 14 2.0476943108323906E-4 8.775832760710245E-5 0.0 9.068360519400588E-4 0.0 15 2.0476943108323906E-4 8.775832760710245E-5 0.0 0.0012871221382375027 0.0 16 2.0476943108323906E-4 8.775832760710245E-5 0.0 0.0018429248797491517 0.0 17 2.0476943108323906E-4 8.775832760710245E-5 0.0 0.0024864859488679027 0.0 18 2.0476943108323906E-4 8.775832760710245E-5 0.0 0.0028082664834272785 0.0 19 2.0476943108323906E-4 8.775832760710245E-5 0.0 0.003481080328415064 0.0 20 2.0476943108323906E-4 8.775832760710245E-5 0.0 0.005206994104688079 0.0 21 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.008834338312448314 0.0 22 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.013251507468672472 0.0 23 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.016878851676432705 0.0 24 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.022904923505453742 0.0 25 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.028141170386010855 0.0 26 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.03791159752626826 0.0 27 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.11192112047492467 0.0 28 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.1971637093572902 0.0 29 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.29317131975946026 0.0 30 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.45470514810826684 0.0 31 2.0476943108323906E-4 1.170111034761366E-4 0.0 0.6849829997493037 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9655 0.0 30.12118 1 GTATTGG 870 0.0 20.20115 1 CGCGATA 110 3.8582584E-8 18.5 14 CAATGCG 240 0.0 18.5 19 GTCGTAC 50 0.0070376555 18.499998 1 GTATCAA 16625 0.0 17.504059 2 CGAACTA 165 5.4569682E-11 16.818182 24 ATTGGAC 1030 0.0 16.524271 3 ATCGTCA 245 0.0 15.102041 10 TTGGACC 1615 0.0 14.777088 4 ATTAGAC 355 0.0 14.59155 3 TTAGACT 520 0.0 14.586538 4 GGACCCT 1660 0.0 14.487952 6 CGCCGGA 180 3.3378456E-9 14.388888 14 TGCGACG 260 0.0 14.230769 22 GACCCTC 1675 0.0 14.026867 7 GCGAACT 200 9.858923E-10 13.874999 23 CGACGAA 310 0.0 13.725807 10 TATTGGA 1300 0.0 13.661538 2 AGCCGTC 190 7.1413524E-9 13.631579 12 >>END_MODULE