SRR2088347_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2088347_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	551832
Sequences flagged as poor quality	0
Sequence length	43
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	3774	0.6839037968077241	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	3736	0.6770176430507836	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	3177	0.5757186969947375	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1492	0.2703721422461909	No Hit
TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG	754	0.13663578770350396	No Hit
GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG	737	0.13355513997013582	No Hit
GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA	678	0.12286348018962293	No Hit
GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG	630	0.11416518070717174	No Hit
ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA	588	0.10655416866002697	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCGAA	35	8.8635273E-4	26.428572	12
GGTATCA	940	0.0	25.388296	1
TTGCGTG	60	1.3353019E-6	24.666666	7
GACCGTC	40	0.0019299214	23.125002	22
GTATACG	40	0.0019299214	23.125002	1
CGAAGAG	40	0.0019299214	23.125002	5
CGTGCGG	50	2.6996364E-4	22.199999	10
TTGGACC	95	7.1249815E-9	21.421053	4
CGACGCT	45	0.0038233243	20.555557	28
AGTGCGA	45	0.0038233243	20.555557	11
TGCGGTC	55	5.138438E-4	20.181818	12
GTGCGGT	55	5.138438E-4	20.181818	11
GCCGTCA	55	5.138438E-4	20.181818	13
GGAGTGT	65	6.8938236E-5	19.923075	6
CGCCGGA	65	6.8938236E-5	19.923075	14
TATACCG	65	6.8938236E-5	19.923075	5
TACCGAC	95	1.6721788E-7	19.473684	7
GGATACA	60	9.2285214E-4	18.5	1
TCGAACT	60	9.2285214E-4	18.5	19
TGCGTGC	70	1.21773985E-4	18.5	8