##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088346_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1624706 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.98836404863403 31.0 31.0 33.0 28.0 34.0 2 31.306746574457165 31.0 31.0 34.0 30.0 34.0 3 31.377600624359115 31.0 31.0 34.0 28.0 34.0 4 35.25965867055332 35.0 35.0 37.0 33.0 37.0 5 35.022436674696834 35.0 35.0 37.0 32.0 37.0 6 35.084736561568675 36.0 35.0 37.0 32.0 37.0 7 34.88665087714331 36.0 35.0 37.0 32.0 37.0 8 34.95266405121911 36.0 35.0 37.0 32.0 37.0 9 36.43941365391646 38.0 35.0 39.0 32.0 39.0 10 36.24817967066041 38.0 35.0 39.0 32.0 39.0 11 36.352204645025004 38.0 35.0 39.0 32.0 39.0 12 36.12600864402544 38.0 35.0 39.0 31.0 39.0 13 36.17839966123102 38.0 35.0 39.0 32.0 39.0 14 36.9879368944289 39.0 36.0 40.0 31.0 41.0 15 37.12914213402302 39.0 36.0 40.0 31.0 41.0 16 37.09815129629607 39.0 36.0 40.0 31.0 41.0 17 37.19204028298043 39.0 36.0 40.0 31.0 41.0 18 37.20019622011613 39.0 36.0 40.0 31.0 41.0 19 37.29856847946644 39.0 36.0 40.0 31.0 41.0 20 37.28196916857573 39.0 36.0 40.0 31.0 41.0 21 37.20918553879902 39.0 36.0 40.0 31.0 41.0 22 37.12910766624854 39.0 36.0 40.0 31.0 41.0 23 36.99960669807337 39.0 36.0 40.0 31.0 41.0 24 36.913577594961794 39.0 35.0 40.0 31.0 41.0 25 36.77201105923164 39.0 35.0 40.0 30.0 41.0 26 36.54233935247362 38.0 35.0 40.0 30.0 41.0 27 36.413943199569644 38.0 35.0 40.0 30.0 41.0 28 36.24973195150384 38.0 35.0 40.0 30.0 41.0 29 36.023391308950664 38.0 35.0 40.0 29.0 41.0 30 35.78023900939616 38.0 34.0 40.0 29.0 41.0 31 35.52526672517982 38.0 34.0 40.0 27.0 41.0 32 35.3985896525279 38.0 34.0 40.0 27.0 41.0 33 35.216677355780064 38.0 34.0 40.0 27.0 41.0 34 35.351999684866065 38.0 34.0 40.0 27.0 41.0 35 35.25497720818413 38.0 34.0 40.0 27.0 41.0 36 35.18923916080817 38.0 34.0 40.0 26.0 41.0 37 35.06094641122763 38.0 33.0 40.0 25.0 41.0 38 35.0157437714885 38.0 33.0 40.0 25.0 41.0 39 34.891666553825736 38.0 33.0 40.0 24.0 41.0 40 34.68031816217827 38.0 33.0 40.0 24.0 41.0 41 34.53377226402807 38.0 33.0 40.0 23.0 41.0 42 34.360982233093246 38.0 33.0 40.0 22.0 41.0 43 33.97341303595851 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 2.0 14 4.0 15 5.0 16 22.0 17 64.0 18 129.0 19 319.0 20 629.0 21 1206.0 22 2347.0 23 4096.0 24 6799.0 25 10563.0 26 16204.0 27 23315.0 28 31920.0 29 43112.0 30 55060.0 31 68260.0 32 82607.0 33 99328.0 34 119574.0 35 142654.0 36 176618.0 37 226258.0 38 266424.0 39 247186.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.37173494773823 22.510841961561045 14.516349419525747 22.60107367117497 2 18.324238354508445 23.83095772404361 36.120258065151475 21.724545856296462 3 19.499404815394293 25.368343564928054 33.43965000437002 21.69260161530763 4 13.292497227190642 16.592540435007933 36.65752449981719 33.45743783798423 5 11.966041856188134 38.73666989596887 35.57142030619694 13.725867941646058 6 31.293538646376636 37.545438990192686 13.742609432106487 17.41841293132419 7 24.27448412205039 34.412564488590554 22.220327862394797 19.092623526964264 8 25.962235629092277 34.68122848072205 19.744987708545423 19.61154818164025 9 23.684223484125745 14.71213868847656 23.490465351885202 38.11317247551249 10 15.838188570732182 27.626228991583705 34.622510164915994 21.91307227276812 11 31.557094021933814 22.802094655894667 24.89804309210405 20.742768230067473 12 20.971671182355454 27.308325321627418 31.752021596522695 19.96798189949443 13 31.169762406244576 21.65370226982605 27.752713413996133 19.423821909933242 14 19.91794207690499 23.736663741009142 29.057564876353016 27.287829305732853 15 21.295668262442558 29.941847940488923 27.250591799377855 21.51189199769066 16 20.776312760585608 29.09529477948626 28.10096103541195 22.027431424516188 17 20.68269582312123 26.97257226845965 27.946717744625797 24.398014163793327 18 22.54358634731453 25.50707635719939 31.35244161097454 20.596895684511537 19 21.70521928275023 24.830892481470492 32.75429523864625 20.70959299713302 20 22.88241688034635 24.30310468478605 32.75127930837948 20.063199126488115 21 21.634683444266223 25.2413051961401 33.2730352445304 19.85097611506328 22 19.88107386813368 25.658857664094302 32.61777823187703 21.842290235894986 23 21.317272171088185 25.908256632276856 33.83670645642965 18.937764740205303 24 21.148441625746443 25.781218263488903 31.188596583012558 21.8817435277521 25 20.857004282620977 26.416840954609633 32.26780722173735 20.45834754103204 26 20.487460500545946 27.2345889040848 32.118364799539115 20.159585795830136 27 19.1323230172105 27.400772816743462 31.80372325823872 21.66318090780732 28 20.08671107264945 26.54794159681813 31.853639981633602 21.511707348898817 29 20.197438798157943 26.502517994024764 30.924548810677134 22.37549439714016 30 20.616960853225137 26.81457445223936 32.79110189782028 19.77736279671522 31 21.61812660259764 26.348397802433176 32.56342993747792 19.470045657491262 32 20.969332297658777 26.500486857314492 31.198690716966638 21.331490128060093 33 20.49478490262238 26.337626622909006 32.106054880082915 21.061533594385693 34 19.46235195783114 27.23391185851471 32.90743063668135 20.39630554697281 35 18.99303627856363 29.550454051379145 31.263748641292636 20.19276102876459 36 21.71648285905265 26.809835133248722 30.91156184565084 20.56212016204778 37 20.68774289009827 27.834635927977125 30.86133737426956 20.616283807655048 38 20.480690044845037 26.084596228486877 32.213951324116486 21.2207624025516 39 20.08677262224673 25.6899402107212 33.13122497239501 21.09206219463706 40 18.535845869960475 26.419733785681842 32.67138793110876 22.373032413248918 41 20.471826902836572 25.39801047081749 32.5871265324311 21.54303609391484 42 18.90932882626149 27.727724277500055 31.809447370785854 21.553499525452605 43 19.326327347840163 28.07363301421919 30.51555173674499 22.08448790119566 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 150.0 1 199.5 2 249.0 3 694.0 4 1139.0 5 1139.0 6 2030.0 7 2921.0 8 3236.5 9 3552.0 10 5520.0 11 7488.0 12 7488.0 13 13971.0 14 20454.0 15 32958.5 16 45463.0 17 44682.5 18 43902.0 19 43902.0 20 46431.5 21 48961.0 22 40320.0 23 31679.0 24 34554.0 25 37429.0 26 37429.0 27 40512.0 28 43595.0 29 44955.0 30 46315.0 31 50262.5 32 54210.0 33 54210.0 34 58995.0 35 63780.0 36 68809.5 37 73839.0 38 77136.5 39 80434.0 40 80434.0 41 82983.0 42 85532.0 43 88977.5 44 92423.0 45 100561.5 46 108700.0 47 108700.0 48 147290.0 49 185880.0 50 169375.0 51 152870.0 52 134651.0 53 116432.0 54 116432.0 55 99688.0 56 82944.0 57 68046.0 58 53148.0 59 47214.0 60 41280.0 61 41280.0 62 36202.0 63 31124.0 64 26785.5 65 22447.0 66 19280.5 67 16114.0 68 16114.0 69 13638.0 70 11162.0 71 9437.5 72 7713.0 73 6291.5 74 4870.0 75 4870.0 76 3971.0 77 3072.0 78 2351.0 79 1630.0 80 1254.5 81 879.0 82 879.0 83 701.5 84 524.0 85 367.0 86 210.0 87 157.5 88 105.0 89 105.0 90 82.0 91 59.0 92 39.5 93 20.0 94 13.5 95 7.0 96 7.0 97 4.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1624706.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.895514299494536 #Duplication Level Percentage of deduplicated Percentage of total 1 77.53985788289161 35.58731656245026 2 12.150046590737942 11.152652740894759 3 4.198925088213345 5.781354792858058 4 1.8352292728431665 3.3691516533849803 5 1.0087260990822675 2.314800155235177 6 0.6255053362829099 1.7224733463469457 7 0.4129357436237587 1.3266328828379639 8 0.29367107968995654 1.078254818980672 9 0.23019230806554997 0.950831492981049 >10 1.4742169231913014 12.943366637944656 >50 0.13906649550153521 4.347985037337536 >100 0.07826778525284503 6.538789249023134 >500 0.00566762196163131 1.8324104366879774 >1k 0.006342338861825513 4.816216500795639 >5k 9.446036602718849E-4 2.5295897480678593 >10k+ 4.0483014011652213E-4 3.708173944173318 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 21248 1.307805843026369 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20507 1.2621975914411592 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 18119 1.115217153134167 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7539 0.4640224139013459 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5946 0.3659739054327368 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5677 0.34941706376415177 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5633 0.3467088814837884 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5544 0.3412309673257808 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5416 0.3333526188738147 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5089 0.3132259005629326 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3694 0.22736421235595855 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3156 0.19425052901878861 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2911 0.17917087768494733 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2909 0.17904777849038533 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2753 0.16944604131455168 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2642 0.16261403601636235 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2586 0.15916725856862718 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2136 0.13146993979218394 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2107 0.12968500147103537 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2044 0.1258073768423333 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2028 0.12482258328583755 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1990 0.12248369858916014 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1884 0.11595944127737572 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 1824 0.1122664654405166 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1789 0.11011222953568214 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1749 0.10765024564444274 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 1670 0.10278782745924493 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 6.1549597280985E-5 0.0 0.0 0.0 6.1549597280985E-5 7 1.2309919456197E-4 0.0 0.0 0.0 6.1549597280985E-5 8 1.2309919456197E-4 0.0 0.0 0.0 6.1549597280985E-5 9 1.8464879184295496E-4 0.0 0.0 0.0 6.1549597280985E-5 10 1.8464879184295496E-4 0.0 0.0 1.8464879184295496E-4 6.1549597280985E-5 11 1.8464879184295496E-4 0.0 0.0 8.001447646528049E-4 6.1549597280985E-5 12 1.8464879184295496E-4 0.0 0.0 0.0013540911401816698 1.2309919456197E-4 13 1.8464879184295496E-4 0.0 0.0 0.0014771903347436397 1.2309919456197E-4 14 2.4619838912394E-4 0.0 0.0 0.00196958711299152 1.2309919456197E-4 15 2.4619838912394E-4 0.0 0.0 0.0028928310722062946 1.2309919456197E-4 16 2.4619838912394E-4 0.0 0.0 0.00393917422598304 1.2309919456197E-4 17 2.4619838912394E-4 0.0 0.0 0.005047066977040769 1.2309919456197E-4 18 3.0774798640492495E-4 0.0 0.0 0.0056625629498506195 1.2309919456197E-4 19 5.539463755288649E-4 0.0 0.0 0.006832005298189334 1.2309919456197E-4 20 5.539463755288649E-4 0.0 0.0 0.010463431537767449 1.2309919456197E-4 21 5.539463755288649E-4 0.0 0.0 0.016679940863146933 1.2309919456197E-4 22 5.539463755288649E-4 0.0 0.0 0.02862056273565802 1.2309919456197E-4 23 5.539463755288649E-4 0.0 0.0 0.034098476893665686 1.2309919456197E-4 24 5.539463755288649E-4 0.0 0.0 0.042099924540193734 1.2309919456197E-4 25 5.539463755288649E-4 0.0 0.0 0.048254884268292234 2.4619838912394E-4 26 6.154959728098499E-4 0.0 0.0 0.059518460570712486 2.4619838912394E-4 27 6.154959728098499E-4 0.0 0.0 0.1427950656918852 2.4619838912394E-4 28 6.154959728098499E-4 0.0 0.0 0.2525995472411624 2.4619838912394E-4 29 6.154959728098499E-4 0.0 0.0 0.38400793743606537 2.4619838912394E-4 30 7.385951673718198E-4 0.0 0.0 0.5977081391956452 3.0774798640492495E-4 31 7.385951673718198E-4 0.0 0.0 0.9020708977501161 3.0774798640492495E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5360 0.0 29.303171 1 ATACGAC 75 9.269639E-6 19.733334 19 GTATTGG 590 0.0 19.12712 1 ATTGGAC 560 0.0 18.830357 3 TTGGACC 940 0.0 18.106382 4 AGTAGTG 250 0.0 17.76 5 GATACGA 85 2.724239E-5 17.411764 18 CAATGCG 85 2.724239E-5 17.411764 19 CGGTATA 75 2.0679292E-4 17.266666 21 TATACCG 75 2.0679292E-4 17.266666 5 GGACCCT 1010 0.0 17.217821 6 CATTGCG 65 0.0015803142 17.076923 29 CTAATAC 295 0.0 16.932203 3 GTATCAA 9360 0.0 16.800215 2 GGGTGTA 100 5.8808E-6 16.650002 7 GTCTAAC 135 2.220986E-8 16.444445 1 ATCGGCT 90 4.4477776E-5 16.444445 3 GTAGTGT 170 8.54925E-11 16.323528 6 TACGTTA 80 3.3836428E-4 16.1875 19 TTCTCGA 150 4.6748028E-9 16.033333 10 >>END_MODULE