##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088345_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2219608 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.86554652893664 31.0 31.0 33.0 28.0 34.0 2 31.17076168404511 31.0 31.0 34.0 28.0 34.0 3 31.213561133317235 31.0 31.0 34.0 28.0 34.0 4 35.112183322460545 35.0 35.0 37.0 32.0 37.0 5 34.87821453157495 35.0 35.0 37.0 32.0 37.0 6 34.95086474728871 35.0 35.0 37.0 32.0 37.0 7 34.750815909836334 35.0 35.0 37.0 31.0 37.0 8 34.829125232924014 35.0 35.0 37.0 32.0 37.0 9 36.2705545303495 38.0 35.0 39.0 32.0 39.0 10 36.075483598905755 38.0 35.0 39.0 31.0 39.0 11 36.18294942169969 38.0 35.0 39.0 31.0 39.0 12 35.954251831855 37.0 35.0 39.0 30.0 39.0 13 36.02057435366966 38.0 35.0 39.0 30.0 39.0 14 36.79223133093772 38.0 36.0 40.0 31.0 41.0 15 36.91830269128603 38.0 36.0 40.0 31.0 41.0 16 36.87646422251136 38.0 36.0 40.0 31.0 41.0 17 36.99338486795867 38.0 36.0 40.0 31.0 41.0 18 37.01565997239152 38.0 36.0 40.0 31.0 41.0 19 37.12561046815474 39.0 36.0 40.0 31.0 41.0 20 37.107416715023554 39.0 36.0 40.0 31.0 41.0 21 37.0338402096226 39.0 36.0 40.0 31.0 41.0 22 36.95711449949721 39.0 36.0 40.0 31.0 41.0 23 36.82554396992622 39.0 35.0 40.0 31.0 41.0 24 36.73990317209165 38.0 35.0 40.0 30.0 41.0 25 36.59690134474195 38.0 35.0 40.0 30.0 41.0 26 36.347502802296624 38.0 35.0 40.0 30.0 41.0 27 36.21189282071429 38.0 35.0 40.0 30.0 41.0 28 36.026123081192715 38.0 34.0 40.0 29.0 41.0 29 35.80410279652984 38.0 34.0 40.0 29.0 41.0 30 35.554197858360574 38.0 34.0 40.0 27.0 41.0 31 35.255314902451246 38.0 34.0 40.0 27.0 41.0 32 35.14178809952028 37.0 33.0 40.0 27.0 41.0 33 34.94625942959297 37.0 33.0 40.0 26.0 41.0 34 35.06292462452829 37.0 33.0 40.0 26.0 41.0 35 34.95031960598448 37.0 33.0 40.0 25.0 41.0 36 34.8619968030391 38.0 33.0 40.0 25.0 41.0 37 34.72531951587848 37.0 33.0 40.0 25.0 41.0 38 34.646907922480004 38.0 33.0 40.0 24.0 41.0 39 34.506893559583496 38.0 33.0 40.0 24.0 41.0 40 34.27798647328717 38.0 33.0 40.0 23.0 41.0 41 34.103335814251885 38.0 33.0 40.0 21.0 41.0 42 33.90233500690212 37.0 33.0 40.0 20.0 41.0 43 33.514175025499995 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 7.0 15 14.0 16 26.0 17 93.0 18 229.0 19 490.0 20 1154.0 21 2137.0 22 3889.0 23 6561.0 24 11032.0 25 16829.0 26 25088.0 27 36041.0 28 49288.0 29 64710.0 30 81494.0 31 99238.0 32 117876.0 33 141433.0 34 166740.0 35 198365.0 36 242610.0 37 305557.0 38 354603.0 39 294102.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.070949464950566 22.990726290408038 15.125463595373597 21.812860649267797 2 18.497320247539207 24.342181141895324 36.022802224536946 21.137696386028523 3 19.782141711509418 25.65259271006412 33.98086508969151 20.584400488734946 4 13.453321487397773 16.69893963258377 36.61669087514552 33.23104800487293 5 11.549471798623902 39.14010942472725 35.60872009832367 13.70169867832518 6 30.84846513438409 37.603802112805504 13.371189867760434 18.176542885049972 7 23.43990470389366 35.09971130037376 22.143234300831498 19.317149694901083 8 26.097130664513735 34.78028552789502 19.63616999037668 19.486413817214572 9 23.33538174308256 14.697730410054389 23.93255926271666 38.03432858414639 10 16.006429964209897 27.761839027431872 34.33272902242198 21.899001985936255 11 31.113647094441905 22.730545213389032 25.231572421797 20.924235270372066 12 20.708881928700922 27.760712702423127 31.917257461677917 19.613147907198027 13 31.501553427452055 21.595209604578827 28.294635809566376 18.608601158402745 14 19.61143589318474 24.013474451344564 29.438396329441957 26.93669332602874 15 20.93653473946751 30.083149817445243 27.94610579886178 21.034209644225466 16 20.263578073245366 29.212951115692498 28.692228537651694 21.83124227341044 17 20.228031255969523 26.976385019336746 28.27999358445275 24.515590140240977 18 22.453964844242766 25.19368284850298 32.026510987525725 20.32584131972853 19 21.44072286638001 24.428232372563084 33.660808575207874 20.470236185849032 20 22.833671531189292 23.743111396246544 33.740777650828434 19.68243942173573 21 21.530648655077833 24.78433128732641 34.461220179419065 19.22379987817669 22 19.168474793747365 25.237068887839655 33.79123701122 21.803219307192983 23 20.825118669602922 25.68048051728053 35.32389503011343 18.170505783003126 24 20.890580679110908 25.332310930578732 32.14905514847667 21.62805324183369 25 20.29065492645548 26.310501674169494 33.307007363462375 20.091836035912646 26 20.258937614209355 27.187593484975725 33.0204252282385 19.53304367257642 27 18.568458935091243 27.332979517103922 32.67743673657691 21.42112481122793 28 19.4542009219646 26.52342215382176 32.839041848830966 21.18333507538268 29 19.793990650601366 26.223324118492997 31.690640869919374 22.292044360986267 30 20.04858515557702 26.59586737838393 33.98451438271983 19.371033083319215 31 21.375260856872025 26.011755228851218 33.7390205838148 18.873963330461955 32 20.53092257731996 26.283019343956234 32.10864260716307 21.077415471560744 33 20.04164699352318 26.26026757877968 32.992041838018245 20.7060435896789 34 18.806879412941385 27.300901780854996 33.89850820505242 19.993710601151193 35 18.34954640639248 29.92118428118839 32.07341116088967 19.655858151529458 36 21.556959607282007 26.72201577936284 31.631486280460337 20.08953833289482 37 20.359405804988988 28.076173810871108 31.404103787695846 20.160316596444055 38 20.21465051486569 25.8752446377919 33.02988635831191 20.880218489030494 39 19.606750381148384 25.510090069958295 33.945903961420214 20.937255587473103 40 17.96245102738862 26.373170397655805 33.32565930560711 22.338719269348463 41 20.326336902732375 25.216524719680233 33.24866372800963 21.208474649577763 42 18.49781583054305 27.972551910067 32.40950654349777 21.120125715892176 43 19.130224796450545 28.216784224962243 30.907799935844526 21.745191042742682 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 171.0 1 253.0 2 335.0 3 949.5 4 1564.0 5 1564.0 6 2845.0 7 4126.0 8 4724.5 9 5323.0 10 8253.0 11 11183.0 12 11183.0 13 21095.0 14 31007.0 15 51257.0 16 71507.0 17 69074.0 18 66641.0 19 66641.0 20 70491.0 21 74341.0 22 59950.0 23 45559.0 24 49399.0 25 53239.0 26 53239.0 27 56045.5 28 58852.0 29 60717.0 30 62582.0 31 66359.5 32 70137.0 33 70137.0 34 76337.5 35 82538.0 36 89925.5 37 97313.0 38 101215.5 39 105118.0 40 105118.0 41 108493.5 42 111869.0 43 116330.0 44 120791.0 45 133852.0 46 146913.0 47 146913.0 48 210684.5 49 274456.0 50 247870.0 51 221284.0 52 194323.0 53 167362.0 54 167362.0 55 141257.5 56 115153.0 57 90973.5 58 66794.0 59 57478.5 60 48163.0 61 48163.0 62 41761.0 63 35359.0 64 30194.5 65 25030.0 66 20860.5 67 16691.0 68 16691.0 69 14075.0 70 11459.0 71 9246.0 72 7033.0 73 5778.5 74 4524.0 75 4524.0 76 3541.5 77 2559.0 78 1940.5 79 1322.0 80 1022.0 81 722.0 82 722.0 83 520.5 84 319.0 85 230.0 86 141.0 87 107.5 88 74.0 89 74.0 90 58.5 91 43.0 92 25.5 93 8.0 94 5.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2219608.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.48755723804999 #Duplication Level Percentage of deduplicated Percentage of total 1 75.3169992113337 30.494013165670392 2 13.001871174074592 10.528280067241944 3 4.768342937079841 5.791756727870144 4 2.138440196543314 3.463208794307772 5 1.1670044719663466 2.3624580177898884 6 0.6981346071056401 1.6959458919031885 7 0.44219941137512797 1.2532501785077754 8 0.33408604998935465 1.0821062457102422 9 0.2494540399654388 0.9089806249227164 >10 1.5761795772212273 12.331313618969066 >50 0.17802098203812117 5.031910047335632 >100 0.11231005062498087 8.512835014097032 >500 0.007524095865703351 2.0062080492074514 >1k 0.00819789549546783 6.948525494335953 >5k 7.86099568058559E-4 2.7405536707002796 >10k+ 4.4919975317631944E-4 4.848654391430573 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 33971 1.5304954748766448 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32759 1.475891238452916 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28326 1.276171287903089 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11584 0.5218939560498971 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9560 0.43070668334228385 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9257 0.4170556242363516 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 9223 0.4155238222244648 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9015 0.4061527981517457 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 8891 0.40056622610839393 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8821 0.3974125160839211 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 5508 0.24815192592565893 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4891 0.22035422470994878 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4885 0.2200839067078511 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4544 0.20472083358863366 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4421 0.19917931454563148 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4203 0.18935776046941621 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3943 0.17764398037851728 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3462 0.15597348721035428 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3421 0.15412631419602021 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3340 0.15047702116770167 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3261 0.1469178341400824 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3215 0.14484539612400027 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3203 0.14430476011980492 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3174 0.14299822310966623 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2951 0.13295140403170289 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 2790 0.12569787097541546 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2602 0.11722790690968855 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2552 0.114975256892208 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2436 0.10974910885165308 No Hit ATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGGA 2388 0.10758656483487175 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 2337 0.10528886181704157 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCCT 2308 0.10398232480690285 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 2280 0.10272084079711373 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2262 0.10190988679082073 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 2259 0.10177472778977188 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 9.010600069922256E-5 0.0 0.0 0.0 0.0 5 9.010600069922256E-5 0.0 0.0 0.0 0.0 6 1.8021200139844512E-4 0.0 0.0 0.0 0.0 7 1.8021200139844512E-4 0.0 0.0 4.505300034961128E-5 0.0 8 2.2526500174805642E-4 0.0 0.0 4.505300034961128E-5 0.0 9 2.703180020976677E-4 0.0 0.0 1.8021200139844512E-4 0.0 10 2.703180020976677E-4 0.0 0.0 5.406360041953354E-4 0.0 11 2.703180020976677E-4 0.0 0.0 0.0010362190080410595 0.0 12 2.703180020976677E-4 0.0 0.0 0.0016219080125860063 0.0 13 2.703180020976677E-4 0.0 0.0 0.0017120140132852288 0.0 14 2.703180020976677E-4 0.0 0.0 0.002072438016082119 0.0 15 3.6042400279689025E-4 0.0 0.0 0.002748233021326288 0.0 16 3.6042400279689025E-4 0.0 0.0 0.0037393990290177366 0.0 17 3.6042400279689025E-4 0.0 0.0 0.0046855120363595735 0.0 18 4.0547700314650157E-4 0.0 0.0 0.005406360041953354 0.0 19 4.0547700314650157E-4 0.0 0.0 0.006577738051043247 0.0 20 4.0547700314650157E-4 0.0 0.0 0.01054240208180904 0.0 21 4.0547700314650157E-4 0.0 0.0 0.018561836144039848 0.0 22 4.5053000349611283E-4 0.0 0.0 0.029554768229345 0.0 23 4.5053000349611283E-4 0.0 0.0 0.03581713527794097 0.0 24 4.5053000349611283E-4 0.0 0.0 0.04523321235100973 0.0 25 5.406360041953354E-4 0.0 0.0 0.05154063239995531 0.0 26 5.406360041953354E-4 0.0 0.0 0.06275882948700852 0.0 27 5.406360041953354E-4 0.0 0.0 0.14881006015476606 0.0 28 5.406360041953354E-4 0.0 0.0 0.2572526319962804 0.0 29 5.406360041953354E-4 0.0 0.0 0.38159891296120757 0.0 30 5.856890045449467E-4 0.0 0.0 0.597582996637244 0.0 31 6.757950052441692E-4 0.0 0.0 0.8879946368908384 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8780 0.0 28.339975 1 GTATTGG 975 0.0 23.148718 1 ATTGGAC 1035 0.0 21.091785 3 ACCGTGT 85 1.246377E-6 19.588236 8 TATTGGA 1195 0.0 18.732218 2 ACGTTTA 150 1.2732926E-11 18.499998 26 TGCGCGA 105 4.802241E-7 17.619047 12 CGCGATA 95 3.6094498E-6 17.526316 14 GGACCCT 1725 0.0 17.15942 6 TTGGACC 1775 0.0 16.988733 4 TGGACCC 1755 0.0 16.549858 5 GTATCAA 15230 0.0 16.42285 2 TATACCG 170 8.54925E-11 16.32353 5 CGACGAG 125 1.659646E-7 16.279999 24 CCGACCG 175 1.3278623E-10 15.857143 9 GACCCTC 1815 0.0 15.493113 7 CTAGACA 120 1.9373783E-6 15.416667 4 CAATGCG 120 1.9373783E-6 15.416667 19 TTTTTAC 1960 0.0 15.385203 1 CGCCGGA 160 1.097942E-8 15.031251 14 >>END_MODULE