##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088344_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3372644 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.93102651806713 31.0 31.0 33.0 28.0 34.0 2 31.231289160670382 31.0 31.0 34.0 28.0 34.0 3 31.300706211506462 31.0 31.0 34.0 28.0 34.0 4 35.17971241554104 35.0 35.0 37.0 33.0 37.0 5 34.926063349704265 35.0 35.0 37.0 32.0 37.0 6 34.99200152758488 36.0 35.0 37.0 32.0 37.0 7 34.816317405572605 35.0 35.0 37.0 32.0 37.0 8 34.87963686650592 36.0 35.0 37.0 32.0 37.0 9 36.3620776459063 38.0 35.0 39.0 32.0 39.0 10 36.147147164064755 38.0 35.0 39.0 31.0 39.0 11 36.25941783360473 38.0 35.0 39.0 32.0 39.0 12 36.037130808943964 38.0 35.0 39.0 30.0 39.0 13 36.103714177956526 38.0 35.0 39.0 31.0 39.0 14 36.93898555554633 39.0 36.0 40.0 31.0 41.0 15 37.05634955838802 39.0 36.0 40.0 31.0 41.0 16 37.026204366663066 39.0 36.0 40.0 31.0 41.0 17 37.08009472686711 39.0 36.0 40.0 31.0 41.0 18 37.084609582274325 39.0 36.0 40.0 31.0 41.0 19 37.17307341065348 39.0 36.0 40.0 31.0 41.0 20 37.14914203811609 39.0 36.0 40.0 31.0 41.0 21 37.079045994774425 39.0 36.0 40.0 31.0 41.0 22 36.99643247256455 39.0 36.0 40.0 31.0 41.0 23 36.87231264254395 39.0 35.0 40.0 31.0 41.0 24 36.79493655422867 39.0 35.0 40.0 30.0 41.0 25 36.658323855111895 38.0 35.0 40.0 30.0 41.0 26 36.42288424156241 38.0 35.0 40.0 30.0 41.0 27 36.289475853366085 38.0 35.0 40.0 30.0 41.0 28 36.13760242705723 38.0 35.0 40.0 30.0 41.0 29 35.93210074944169 38.0 34.0 40.0 29.0 41.0 30 35.71872216575482 38.0 34.0 40.0 28.0 41.0 31 35.49461401796336 38.0 34.0 40.0 27.0 41.0 32 35.383348791037534 38.0 34.0 40.0 27.0 41.0 33 35.212919003606665 38.0 34.0 40.0 27.0 41.0 34 35.40138004485502 38.0 34.0 40.0 27.0 41.0 35 35.32766814404366 38.0 34.0 40.0 27.0 41.0 36 35.27313822626995 38.0 34.0 40.0 26.0 41.0 37 35.17408033578403 38.0 34.0 40.0 26.0 41.0 38 35.15288361297546 38.0 34.0 40.0 26.0 41.0 39 35.054948283898334 38.0 33.0 40.0 25.0 41.0 40 34.870662305301124 38.0 33.0 40.0 24.0 41.0 41 34.75385750764089 38.0 33.0 40.0 24.0 41.0 42 34.61486210818575 38.0 33.0 40.0 23.0 41.0 43 34.2528431699284 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 8.0 15 17.0 16 44.0 17 121.0 18 284.0 19 614.0 20 1378.0 21 2799.0 22 5037.0 23 8728.0 24 14393.0 25 22407.0 26 33965.0 27 48479.0 28 67800.0 29 90548.0 30 115749.0 31 141250.0 32 172301.0 33 207562.0 34 249154.0 35 298269.0 36 367699.0 37 463771.0 38 573343.0 39 486922.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.32002784758782 22.622903573576103 14.029378730752489 23.02768984808358 2 18.581208096674303 23.947057560774276 35.3267644020537 22.14496994049772 3 20.008634175442175 25.436008069633203 32.76121049242079 21.79414726250384 4 13.790545340688196 16.694794944263315 36.71131610688825 32.80334360816025 5 12.250270114485845 38.644695378462714 35.628664039252286 13.476370467799152 6 31.742306629457484 37.52501005146111 13.9914559615542 16.74122735752721 7 24.8694199565682 33.83001585699528 22.337697070903424 18.962867115533093 8 26.12315441534891 34.81096730043254 19.84718814081771 19.218690143400845 9 24.1101047130975 14.511374458733266 22.737324188381578 38.64119663978766 10 15.632779504744645 27.662036076146784 34.951331952023395 21.75385246708517 11 32.27675378723636 22.53952685192982 24.574517796719725 20.60920156411409 12 20.58340577896748 26.930354938143488 31.942742845079408 20.543496437809626 13 30.909132419549767 21.449729055304978 27.46512824952767 20.176010275617585 14 20.127205836133314 23.173184006376008 28.529248862316926 28.170361295173755 15 21.74380100597632 29.766260536243966 26.55453703385237 21.93540142392734 16 21.246209205596557 28.905363269885587 27.596360600170073 22.252066924347783 17 20.92106371143827 26.95022065773915 27.884176331685172 24.244539299137415 18 22.523159871009213 25.758158880688264 30.604920056786305 21.11376119151621 19 21.959180986786627 24.956384367872804 31.804008961515063 21.28042568382551 20 23.02078132171673 24.683364149907312 31.77023723820243 20.525617290173525 21 22.105623955567204 25.443806105832696 32.13244564205412 20.318124296545975 22 20.48019298805329 25.653285671419813 31.862598009158393 22.003923331368505 23 21.624932842007635 25.89042899280209 32.72921778877343 19.75542037641684 24 21.59338489327661 25.6660649626821 30.58031028474989 22.160239859291405 25 21.433154522090085 26.297943097463 31.27228963388961 20.9966127465573 26 21.277579252361058 26.87707329916825 31.14790650895855 20.697440939512145 27 19.998908867938624 27.13725492521594 30.938189740749394 21.925646466096037 28 20.749032509805364 26.504902385190967 30.96395587556825 21.782109229435424 29 20.82434434230236 26.298358202051563 30.358140378883746 22.519157076762326 30 21.06442304613235 26.701157904599476 31.82648390995314 20.407935139315033 31 22.018363040985058 26.17753311645107 31.60819819702287 20.195905645541007 32 21.426068093756708 26.399139666089873 30.502626426032514 21.67216581412091 33 21.15361123201856 26.29865470532911 31.133615050980772 21.414119011671556 34 20.196824805701404 27.089251044581047 31.832918031075913 20.881006118641636 35 19.903938868140248 29.01145214259199 30.505324605858192 20.579284383409576 36 22.0760922291235 26.664539749822396 30.33729619847218 20.922071822581927 37 21.394786997975476 27.416976117254 30.188332951832447 20.999903932938075 38 21.164581853287807 25.904809401763128 31.37742969610786 21.553179048841205 39 20.632447421073792 25.71907974870754 32.073797293755284 21.57467553646338 40 19.462593739511195 26.300077921061337 31.578785071890188 22.65854326753728 41 21.17208338620975 25.27121154797245 31.634853841674364 21.92185122414343 42 19.69250238092132 27.48463816519028 31.001374589194707 21.821484864693694 43 20.11878514305097 27.53160428435376 30.032935584069946 22.316674988525325 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 249.0 1 370.5 2 492.0 3 1283.0 4 2074.0 5 2074.0 6 3719.0 7 5364.0 8 5881.0 9 6398.0 10 9823.0 11 13248.0 12 13248.0 13 24679.5 14 36111.0 15 56926.0 16 77741.0 17 76674.0 18 75607.0 19 75607.0 20 81904.5 21 88202.0 22 74784.5 23 61367.0 24 68412.5 25 75458.0 26 75458.0 27 83841.5 28 92225.0 29 97448.0 30 102671.0 31 110231.5 32 117792.0 33 117792.0 34 128117.0 35 138442.0 36 149886.5 37 161331.0 38 168030.0 39 174729.0 40 174729.0 41 179597.5 42 184466.0 43 188339.5 44 192213.0 45 205364.0 46 218515.0 47 218515.0 48 285564.5 49 352614.0 50 325372.0 51 298130.0 52 269741.0 53 241352.0 54 241352.0 55 211023.0 56 180694.0 57 153692.0 58 126690.0 59 113232.5 60 99775.0 61 99775.0 62 88298.5 63 76822.0 64 66908.5 65 56995.0 66 48746.5 67 40498.0 68 40498.0 69 34382.0 70 28266.0 71 23848.0 72 19430.0 73 15849.5 74 12269.0 75 12269.0 76 9748.0 77 7227.0 78 5407.0 79 3587.0 80 2705.5 81 1824.0 82 1824.0 83 1356.0 84 888.0 85 681.0 86 474.0 87 353.0 88 232.0 89 232.0 90 182.0 91 132.0 92 84.0 93 36.0 94 23.0 95 10.0 96 10.0 97 6.0 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3372644.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.581314330904334 #Duplication Level Percentage of deduplicated Percentage of total 1 73.90846468216547 32.9493649571016 2 13.827002505579655 12.328518899108968 3 5.068034467282569 6.778189128773445 4 2.4035908987114927 4.286209655134315 5 1.3135215130144102 2.927925772605023 6 0.7591734052592295 2.0306968926914837 7 0.5026737983339431 1.5686901026604594 8 0.3516516316269691 1.2541673539629832 9 0.2532885296083399 1.0162741999393774 >10 1.3814596994127994 11.507687075711761 >50 0.1333806870500386 4.152110247777106 >100 0.08641358075467453 7.255548412981416 >500 0.005605567652243809 1.696280005996185 >1k 0.004871505221106848 4.527657743001856 >5k 4.671306376403827E-4 1.60908150897573 >10k+ 4.003976894060423E-4 4.111598043578243 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37151 1.1015393264157143 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 34762 1.0307046934096808 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 30948 0.9176183433531675 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13789 0.40884836940987546 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11006 0.32633150726848137 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10547 0.3127220068290635 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9797 0.2904842610130212 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9619 0.28520650267268055 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 9540 0.28286412678005746 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 8990 0.26655644651495974 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5760 0.1707858878672045 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 5254 0.15578282202331464 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5126 0.15198758007071012 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4877 0.14460464845978407 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4643 0.1376664717651789 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4511 0.13375262850155545 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4067 0.12058788297845845 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3944 0.11694089266462751 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3839 0.1138276082503816 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3763 0.11157418334102265 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3602 0.10680048057251225 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.9650327754723002E-5 0.0 0.0 0.0 0.0 2 2.9650327754723002E-5 0.0 0.0 0.0 0.0 3 2.9650327754723002E-5 0.0 0.0 0.0 0.0 4 2.9650327754723002E-5 0.0 0.0 2.9650327754723002E-5 0.0 5 2.9650327754723002E-5 0.0 0.0 2.9650327754723002E-5 0.0 6 5.9300655509446004E-5 0.0 0.0 2.9650327754723002E-5 0.0 7 5.9300655509446004E-5 0.0 0.0 2.9650327754723002E-5 0.0 8 5.9300655509446004E-5 0.0 0.0 5.9300655509446004E-5 0.0 9 5.9300655509446004E-5 0.0 0.0 8.8950983264169E-5 0.0 10 5.9300655509446004E-5 0.0 0.0 1.48251638773615E-4 0.0 11 5.9300655509446004E-5 0.0 0.0 3.55803933056676E-4 0.0 12 5.9300655509446004E-5 0.0 0.0 7.41258193868075E-4 0.0 13 5.9300655509446004E-5 0.0 0.0 8.8950983264169E-4 0.0 14 5.9300655509446004E-5 0.0 0.0 0.0010377614714153051 0.0 15 5.9300655509446004E-5 0.0 0.0 0.0013935654044719811 0.0 16 5.9300655509446004E-5 0.0 0.0 0.001808669993038103 0.0 17 5.9300655509446004E-5 0.0 0.0 0.002579578514660901 0.0 18 5.9300655509446004E-5 0.0 0.0 0.003024333430981746 0.0 19 5.9300655509446004E-5 0.0 0.0 0.003617339986076206 0.0 20 5.9300655509446004E-5 0.0 0.0 0.005663212601152093 0.0 21 5.9300655509446004E-5 0.0 0.0 0.011711879463115586 0.0 22 5.9300655509446004E-5 0.0 0.0 0.017908797963852693 0.0 23 5.9300655509446004E-5 0.0 0.0 0.02291970335440088 0.0 24 5.9300655509446004E-5 0.0 0.0 0.029324174149421046 0.0 25 5.9300655509446004E-5 0.0 0.0 0.03421647822895034 0.0 26 8.8950983264169E-5 0.0 0.0 0.04471269425412228 0.0 27 1.1860131101889201E-4 0.0 0.0 0.11483571939404218 0.0 28 1.77901966528338E-4 0.0 0.0 0.19417999646568093 0.0 29 2.07552294283061E-4 0.0 0.0 0.28289377710781216 0.0 30 2.07552294283061E-4 0.0 0.0 0.42764667720636984 0.0 31 2.07552294283061E-4 0.0 0.0 0.624791706447523 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9380 0.0 29.899786 1 GTATTGG 1175 0.0 19.838297 1 ATTGGAC 1230 0.0 19.101625 3 GTATCAA 16275 0.0 17.312134 2 TTGGACC 2085 0.0 16.414867 4 GGACCCT 2035 0.0 16.363636 6 TGGACCC 2160 0.0 15.331018 5 TATTGGA 1720 0.0 13.982558 2 CGAATTA 215 1.9826984E-10 13.767442 15 TTGATAC 3250 0.0 13.490769 34 GACCCTC 2295 0.0 13.461873 7 TACGTTA 210 2.046363E-9 13.214285 19 TATACTG 505 0.0 13.188119 5 TATACCG 230 5.7661964E-10 12.869565 5 TCTATAC 345 0.0 12.869565 3 TGATACC 2360 0.0 12.777542 35 GATACTG 1115 0.0 12.775785 36 GTAATAC 290 0.0 12.75862 3 TGATACT 1090 0.0 12.729359 35 GATACCC 1215 0.0 12.637859 36 >>END_MODULE