##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088342_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2971671 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.0601520154822 31.0 31.0 33.0 30.0 34.0 2 31.366093016353425 31.0 31.0 34.0 30.0 34.0 3 31.431149343248293 31.0 31.0 34.0 28.0 34.0 4 35.30281245804128 37.0 35.0 37.0 33.0 37.0 5 35.08394502621589 35.0 35.0 37.0 32.0 37.0 6 35.14715794581567 37.0 35.0 37.0 32.0 37.0 7 34.96408451675842 36.0 35.0 37.0 32.0 37.0 8 35.03914666192859 37.0 35.0 37.0 32.0 37.0 9 36.53219518580624 38.0 35.0 39.0 32.0 39.0 10 36.34994553569356 38.0 35.0 39.0 32.0 39.0 11 36.44280810358886 38.0 35.0 39.0 32.0 39.0 12 36.21159542896909 38.0 35.0 39.0 32.0 39.0 13 36.28734237403804 38.0 35.0 39.0 32.0 39.0 14 37.13385936733911 39.0 36.0 41.0 31.0 41.0 15 37.25453389692197 39.0 36.0 41.0 32.0 41.0 16 37.22097399072778 39.0 36.0 40.0 32.0 41.0 17 37.314612216493686 39.0 36.0 41.0 32.0 41.0 18 37.323698350187485 39.0 36.0 40.0 32.0 41.0 19 37.41749406310456 39.0 36.0 41.0 32.0 41.0 20 37.39762510722082 39.0 36.0 41.0 32.0 41.0 21 37.334186388735496 39.0 36.0 41.0 31.0 41.0 22 37.24988600689645 39.0 36.0 40.0 31.0 41.0 23 37.14448100075681 39.0 36.0 40.0 31.0 41.0 24 37.05753597891557 39.0 36.0 40.0 31.0 41.0 25 36.918348969317265 39.0 35.0 40.0 31.0 41.0 26 36.699357028419364 38.0 35.0 40.0 30.0 41.0 27 36.5732838527549 38.0 35.0 40.0 30.0 41.0 28 36.419907183534114 38.0 35.0 40.0 30.0 41.0 29 36.19543617042398 38.0 35.0 40.0 30.0 41.0 30 35.96386241949395 38.0 35.0 40.0 29.0 41.0 31 35.70150632421961 38.0 34.0 40.0 29.0 41.0 32 35.59859722021718 38.0 34.0 40.0 29.0 41.0 33 35.41304134946298 38.0 34.0 40.0 27.0 41.0 34 35.55514153484689 38.0 34.0 40.0 28.0 41.0 35 35.437023479382475 38.0 34.0 40.0 27.0 41.0 36 35.36257412075563 38.0 34.0 40.0 27.0 41.0 37 35.2456732256027 38.0 34.0 40.0 26.0 41.0 38 35.189233936058194 38.0 34.0 40.0 26.0 41.0 39 35.06209402050227 38.0 34.0 40.0 25.0 41.0 40 34.83907168727628 38.0 33.0 40.0 24.0 41.0 41 34.69023253247079 38.0 33.0 40.0 23.0 41.0 42 34.50860038005553 38.0 33.0 40.0 23.0 41.0 43 34.14497331635972 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 1.0 14 2.0 15 8.0 16 42.0 17 73.0 18 206.0 19 499.0 20 1020.0 21 2090.0 22 3827.0 23 6801.0 24 11469.0 25 17809.0 26 27082.0 27 39517.0 28 55135.0 29 74721.0 30 95964.0 31 118100.0 32 144318.0 33 176743.0 34 215201.0 35 258738.0 36 322458.0 37 415740.0 38 501527.0 39 482578.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.707904744502336 22.348133423922096 14.460450029629795 22.483511801945774 2 18.258851669649836 23.82047003184404 36.24852818498414 21.672150113521987 3 19.651872633276028 25.17701320233633 33.748722520090546 21.422391644297097 4 13.18258313252039 16.244463132022354 36.63416979874286 33.938783936714394 5 11.859085342892937 38.70593346302468 35.627833632996385 13.807147561086003 6 31.469600773436895 37.09044507282266 13.408987737875425 18.030966415865013 7 24.305887159110142 34.47622566562718 21.85218350214408 19.365703673118592 8 26.16652381774429 34.48443653419238 19.519926667521403 19.829112980541925 9 23.59117143183078 14.555278831337654 23.550588204414282 38.302961532417285 10 15.899236490176738 27.418950482741867 34.511761227942124 22.170051799139273 11 31.58169258979207 22.424285864754207 25.172436652644254 20.821584892809465 12 21.10415318519446 27.13008943453027 31.772527981731493 19.993229398543782 13 31.730699663589945 21.357714228795853 27.85597732723441 19.055608780379792 14 20.04138412361261 23.590498409817236 28.68268391756692 27.685433549003235 15 21.061281682931927 29.87060142256663 27.34431234144022 21.723804553061225 16 20.79123159999879 29.161875591207775 28.03624627356124 22.010646535232198 17 20.708348939031275 26.62636610849586 27.750851288719375 24.914433663753492 18 22.896713667158984 25.155947613312513 31.446246909567044 20.501091809961466 19 21.78733783113945 24.255511461396633 32.766817053435595 21.190333654028322 20 23.27347139033897 23.591911756045672 32.92191497645601 20.21270187715935 21 22.063647018798516 24.71787758469898 33.48028768998991 19.738187706512598 22 19.768608301524633 25.02689564221611 33.063720714709 22.14077534155026 23 21.485453806965847 25.497674540687715 34.41282699195167 18.604044660394774 24 21.33429306272464 25.062161995725635 31.258911232098036 22.344633709451685 25 20.990109605000015 25.992884138250837 32.38649231358384 20.63051394316531 26 20.772050472612882 26.850617043407567 32.21184310107007 20.16548938290948 27 18.907813146206294 27.117268365172322 32.029420484299905 21.945498004321472 28 20.16485001199662 26.18096013993474 31.866078041613626 21.78811180645502 29 20.203851637681293 26.07307471116419 30.96698793372483 22.756085717429688 30 20.640205460160292 26.34194700557363 33.14643512017313 19.871412414092944 31 22.067012128866217 25.830214717578087 32.71798930635323 19.384783847202467 32 21.237512497177512 26.085996733824167 31.193291585777832 21.483199183220485 33 20.65709831270016 25.965256584594997 32.14292564688352 21.23471945582132 34 19.44323580907846 27.11447532381613 32.96963223721603 20.47265662988938 35 18.943483312923938 29.789266712230255 31.212809224170506 20.054440750675294 36 22.08844787999748 26.57491357556069 30.819360555054715 20.517277989387118 37 21.033452222672025 27.812903918367816 30.692260347797585 20.461383511162577 38 20.7449276854672 25.77455579705829 32.20417065011571 21.276345867358803 39 20.27287004516987 25.344898543614015 33.18701834758962 21.195213063626493 40 18.506961234941553 26.228071680882575 32.48095095318425 22.78401613099162 41 20.928797299566472 25.141141129014617 32.4111585703801 21.518903001038808 42 19.018323360829648 27.965343404434744 31.691025015891732 21.325308218843876 43 19.556236205151915 28.291456221095807 30.241200994322725 21.911106579429553 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 176.0 1 285.0 2 394.0 3 1192.0 4 1990.0 5 1990.0 6 3461.5 7 4933.0 8 5529.0 9 6125.0 10 9694.0 11 13263.0 12 13263.0 13 24947.5 14 36632.0 15 60433.0 16 84234.0 17 82580.0 18 80926.0 19 80926.0 20 84544.5 21 88163.0 22 71429.0 23 54695.0 24 59525.0 25 64355.0 26 64355.0 27 68535.5 28 72716.0 29 75730.0 30 78744.0 31 85063.0 32 91382.0 33 91382.0 34 100298.5 35 109215.0 36 119623.5 37 130032.0 38 136657.5 39 143283.0 40 143283.0 41 147768.0 42 152253.0 43 159017.5 44 165782.0 45 182888.5 46 199995.0 47 199995.0 48 283240.5 49 366486.0 50 333170.5 51 299855.0 52 265233.0 53 230611.0 54 230611.0 55 195250.0 56 159889.0 57 128571.5 58 97254.0 59 83911.5 60 70569.0 61 70569.0 62 61632.0 63 52695.0 64 45051.0 65 37407.0 66 32107.0 67 26807.0 68 26807.0 69 22525.0 70 18243.0 71 15779.5 72 13316.0 73 10928.0 74 8540.0 75 8540.0 76 6889.0 77 5238.0 78 3991.5 79 2745.0 80 2088.5 81 1432.0 82 1432.0 83 1054.0 84 676.0 85 515.0 86 354.0 87 264.0 88 174.0 89 174.0 90 120.5 91 67.0 92 42.5 93 18.0 94 11.0 95 4.0 96 4.0 97 3.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2971671.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.08603528883622 #Duplication Level Percentage of deduplicated Percentage of total 1 73.14746686111003 28.590444710223252 2 13.849250650577751 10.8262459930484 3 5.136026492528331 6.022407381940802 4 2.488439757993315 3.890529767802791 5 1.3289859915639883 2.597239668231952 6 0.7992411689083884 1.8743501119346382 7 0.5336776831543534 1.4601541329644787 8 0.38782359659845594 1.2126789425992506 9 0.2924812958312507 1.0288740825166331 >10 1.7312553502535217 12.948516795251258 >50 0.1761438049540579 4.7684989231571295 >100 0.11347072784977892 8.297449406198636 >500 0.0070036599606853435 1.8888763682990868 >1k 0.007176589836256729 6.032873280224564 >5k 6.917195022898053E-4 1.6407482207250148 >10k+ 8.646493778622567E-4 6.920112214882206 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 41097 1.3829592845237577 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 38965 1.3112151378803374 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 35578 1.1972388598872488 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14130 0.4754900525663843 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13718 0.4616257990874495 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 13313 0.44799710331325376 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 12340 0.41525458235450696 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 11995 0.4036449526209328 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 11837 0.39832807871396264 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 11790 0.3967464769821424 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7694 0.25891156860904185 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7084 0.23838439719605567 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6581 0.22145789355551135 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6159 0.20725712906980615 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5487 0.18464358941484438 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5320 0.17902385560178094 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5137 0.1728657041778851 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 5087 0.17118314914403376 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4849 0.16317418718290147 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4760 0.1601792392226461 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4312 0.14510354611933823 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4157 0.13988762551439912 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 4051 0.13632060884263433 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3949 0.13288819657357764 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3559 0.11976426730953729 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3463 0.11653376164454275 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 3265 0.10987084371049151 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 3227 0.1085921018847645 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3206 0.10788542877054694 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3074 0.10344348348117945 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 3060 0.10297236807170107 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 3023 0.1017272773466511 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 3.3651100677026496E-5 0.0 0.0 0.0 0.0 6 3.3651100677026496E-5 0.0 0.0 0.0 0.0 7 3.3651100677026496E-5 0.0 0.0 0.0 0.0 8 2.6920880541621197E-4 0.0 0.0 0.0 0.0 9 2.6920880541621197E-4 0.0 0.0 0.0 0.0 10 2.6920880541621197E-4 0.0 0.0 3.3651100677026496E-5 3.3651100677026496E-5 11 2.6920880541621197E-4 0.0 0.0 2.3555770473918547E-4 3.3651100677026496E-5 12 2.6920880541621197E-4 0.0 0.0 5.720687115094504E-4 3.3651100677026496E-5 13 3.0285990609323847E-4 0.0 0.0 6.730220135405299E-4 3.3651100677026496E-5 14 3.0285990609323847E-4 0.0 0.0 8.412775169256624E-4 3.3651100677026496E-5 15 3.0285990609323847E-4 0.0 0.0 0.0013460440270810599 3.3651100677026496E-5 16 3.0285990609323847E-4 0.0 0.0 0.0022209726446837485 3.3651100677026496E-5 17 3.0285990609323847E-4 0.0 0.0 0.0032305056649945436 3.3651100677026496E-5 18 3.0285990609323847E-4 0.0 0.0 0.0038025743765039938 3.3651100677026496E-5 19 3.0285990609323847E-4 0.0 0.0 0.005047665101553974 3.3651100677026496E-5 20 3.0285990609323847E-4 0.0 0.0 0.008177217464517439 3.3651100677026496E-5 21 3.0285990609323847E-4 0.0 0.0 0.015344901908724081 3.3651100677026496E-5 22 3.0285990609323847E-4 0.0 0.0 0.024430699091521235 3.3651100677026496E-5 23 3.0285990609323847E-4 0.0 0.0 0.031800290139790036 3.3651100677026496E-5 24 3.0285990609323847E-4 0.0 0.0 0.039741949899568293 3.3651100677026496E-5 25 3.0285990609323847E-4 0.0 0.0 0.045328032611954686 3.3651100677026496E-5 26 3.0285990609323847E-4 0.0 0.0 0.05589447822454101 3.3651100677026496E-5 27 3.0285990609323847E-4 0.0 0.0 0.13887809249408833 3.3651100677026496E-5 28 3.0285990609323847E-4 0.0 0.0 0.237509468578453 3.3651100677026496E-5 29 3.0285990609323847E-4 0.0 0.0 0.3473803122889445 3.3651100677026496E-5 30 3.0285990609323847E-4 0.0 0.0 0.5369706135033118 3.3651100677026496E-5 31 3.0285990609323847E-4 0.0 0.0 0.7918777011317875 3.3651100677026496E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10045 0.0 30.40667 1 GTATTGG 1250 0.0 20.72 1 ATTGGAC 1225 0.0 20.236734 3 TTGGACC 1995 0.0 18.917294 4 TATACCG 250 0.0 18.5 5 CAATGCG 170 0.0 18.499998 19 GTATCAA 17820 0.0 17.254208 2 GGACCCT 2180 0.0 16.887615 6 CGACGAG 210 0.0 16.738094 24 TATTGGA 1540 0.0 16.698051 2 TGGACCC 2205 0.0 16.528345 5 TTTTTAC 2190 0.0 15.458903 1 GTATACG 265 0.0 15.358489 1 TAACGTG 85 5.3677073E-4 15.235293 5 GGTATCG 135 3.9780025E-7 15.074075 35 CGCTTAC 75 0.004106442 14.8 27 CGCCGGA 265 0.0 14.660377 14 ATCGTCA 230 1.8189894E-12 14.478261 10 TAATACT 550 0.0 14.463636 4 GACCCTC 2430 0.0 14.388888 7 >>END_MODULE