##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088341_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3056189 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.026621390234702 31.0 31.0 33.0 30.0 34.0 2 31.33855301488226 31.0 31.0 34.0 30.0 34.0 3 31.407004933268198 31.0 31.0 34.0 28.0 34.0 4 35.28416959814985 37.0 35.0 37.0 33.0 37.0 5 35.050263579902946 35.0 35.0 37.0 32.0 37.0 6 35.110150255759706 37.0 35.0 37.0 32.0 37.0 7 34.91892909764416 36.0 35.0 37.0 32.0 37.0 8 34.993683636712255 36.0 35.0 37.0 32.0 37.0 9 36.48039306469593 38.0 35.0 39.0 32.0 39.0 10 36.29279995445308 38.0 35.0 39.0 32.0 39.0 11 36.394406236001764 38.0 35.0 39.0 32.0 39.0 12 36.16175832057507 38.0 35.0 39.0 31.0 39.0 13 36.233057248749994 38.0 35.0 39.0 32.0 39.0 14 37.06567362162484 39.0 36.0 40.0 31.0 41.0 15 37.19950598604995 39.0 36.0 40.0 32.0 41.0 16 37.166717110754604 39.0 36.0 40.0 31.0 41.0 17 37.25129499517209 39.0 36.0 40.0 32.0 41.0 18 37.26132709724431 39.0 36.0 40.0 32.0 41.0 19 37.358213120981716 39.0 36.0 41.0 32.0 41.0 20 37.34426241309029 39.0 36.0 41.0 31.0 41.0 21 37.26927719457141 39.0 36.0 40.0 31.0 41.0 22 37.193265207092885 39.0 36.0 40.0 31.0 41.0 23 37.065924587779094 39.0 36.0 40.0 31.0 41.0 24 36.98232111953809 39.0 36.0 40.0 31.0 41.0 25 36.84655988225859 39.0 35.0 40.0 31.0 41.0 26 36.62290388454379 38.0 35.0 40.0 30.0 41.0 27 36.49701769098704 38.0 35.0 40.0 30.0 41.0 28 36.34066643129728 38.0 35.0 40.0 30.0 41.0 29 36.11395303104618 38.0 35.0 40.0 30.0 41.0 30 35.87208120963723 38.0 34.0 40.0 29.0 41.0 31 35.621503774799265 38.0 34.0 40.0 28.0 41.0 32 35.500332930980385 38.0 34.0 40.0 28.0 41.0 33 35.32050733773337 38.0 34.0 40.0 27.0 41.0 34 35.45781723577959 38.0 34.0 40.0 27.0 41.0 35 35.36102021177355 38.0 34.0 40.0 27.0 41.0 36 35.294026645603395 38.0 34.0 40.0 27.0 41.0 37 35.16829783760101 38.0 34.0 40.0 26.0 41.0 38 35.12697087778275 38.0 34.0 40.0 25.0 41.0 39 35.00272169031431 38.0 34.0 40.0 25.0 41.0 40 34.794352705280986 38.0 33.0 40.0 24.0 41.0 41 34.655860615950125 38.0 33.0 40.0 23.0 41.0 42 34.47778753211925 38.0 33.0 40.0 23.0 41.0 43 34.10610076798261 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 2.0 15 17.0 16 41.0 17 80.0 18 236.0 19 544.0 20 1123.0 21 2276.0 22 4194.0 23 7358.0 24 11859.0 25 19162.0 26 29168.0 27 42110.0 28 58416.0 29 78551.0 30 101349.0 31 124352.0 32 151078.0 33 184931.0 34 222106.0 35 267973.0 36 330357.0 37 425921.0 38 510690.0 39 482293.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.32960657865073 22.629883164948243 14.584242008593055 22.456268247807973 2 18.22701410154935 23.84535118737748 36.250703081517536 21.676931629555632 3 19.658470074985544 25.311981686996454 33.44721154352692 21.58233669449108 4 13.412554001077812 16.505589150409218 36.499509683465256 33.58234716504771 5 11.99133954084646 38.72136180059545 35.58153635131859 13.705762307239505 6 31.41824671183621 37.33391488549955 13.702850183676468 17.544988218987765 7 24.220982406520015 34.368326042662936 22.192279338745085 19.218412212071964 8 25.87601748452075 34.879027442347315 19.722896718756594 19.522058354375336 9 23.64326944439627 14.708907073482694 23.466775124182437 38.18104835793859 10 15.823236062952914 27.67332125074725 34.64566491143054 21.857777774869287 11 31.496252358738285 22.746269946001377 24.94057141099585 20.816906284264487 12 20.789257470660356 27.316078946688176 31.797640787268065 20.097022795383403 13 31.28118058143655 21.453221643033203 27.90396798103782 19.361629794492423 14 19.885092185071017 23.656194037737848 28.961363318826162 27.497350458364977 15 21.20075034626458 30.000566064467872 27.26941952870061 21.529264060566934 16 20.670580255344156 29.088089774552557 28.226461125277265 22.014868844826026 17 20.6466288570504 26.91243898855732 28.00605590819154 24.434876246200744 18 22.653932724710415 25.39240865011948 31.414189371141642 20.539469254028464 19 21.675262884592545 24.642422310923834 32.89292645186538 20.789388352618243 20 22.9040808667265 24.1240970371924 32.80716604895836 20.16465604712274 21 21.676408101724075 25.065760003717045 33.43886781871148 19.818964075847404 22 19.81261630088977 25.400523331508623 32.9967812854506 21.790079082151006 23 21.400541654982725 25.720169793163972 34.015730048108935 18.86355850374437 24 21.127587331804413 25.40886705632407 31.44445582390356 22.019089787967953 25 20.858592187852256 26.27569826342546 32.361709305281835 20.504000243440444 26 20.549841649191197 26.986060089870094 32.283703658379764 20.180394602558938 27 19.144267582927625 27.134905596479797 32.04579297942634 21.675033841166236 28 20.21458751405754 26.353867512774897 31.942396232693724 21.489148740473837 29 20.149506460497044 26.291960346693216 31.120621139595748 22.43791205321399 30 20.588124621873842 26.60568439975407 33.03139956331235 19.774791415059738 31 21.76076152358378 26.026597177072492 32.60923980814014 19.603401491203588 32 21.018693542840445 26.255542441910496 31.371194647974974 21.354569367274078 33 20.561621025401244 26.13673434463641 32.1615580711795 21.14008655878285 34 19.54345755449025 26.913060677857292 33.053289570769344 20.49019219688311 35 19.103694175981918 29.409928509002555 31.36144394211222 20.12493337290331 36 21.698592593586326 26.610396150238092 31.144376214952672 20.546635041222906 37 20.806501168612282 27.575683310161775 31.016079175731605 20.60173634549434 38 20.58707756621073 25.79451074524514 32.382159611202056 21.236252077342073 39 20.145514560781418 25.456442648016857 33.16211791875437 21.235924872447352 40 18.537531546641915 26.23738257025334 32.71168766067805 22.51339822242669 41 20.695218783916832 25.168665943107577 32.52822387620661 21.607891396768984 42 18.990415841428653 27.70309689616709 31.81599698186205 21.490490280542204 43 19.510998828933683 27.943003524978334 30.50586858338931 22.040129062698675 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 419.0 1 456.0 2 493.0 3 1309.5 4 2126.0 5 2126.0 6 3708.0 7 5290.0 8 5965.5 9 6641.0 10 10431.5 11 14222.0 12 14222.0 13 26421.0 14 38620.0 15 61897.0 16 85174.0 17 83077.0 18 80980.0 19 80980.0 20 86466.0 21 91952.0 22 75812.0 23 59672.0 24 65961.0 25 72250.0 26 72250.0 27 77387.5 28 82525.0 29 85612.5 30 88700.0 31 95204.5 32 101709.0 33 101709.0 34 110096.5 35 118484.0 36 128264.0 37 138044.0 38 143667.5 39 149291.0 40 149291.0 41 153792.0 42 158293.0 43 164419.0 44 170545.0 45 187021.5 46 203498.0 47 203498.0 48 277784.5 49 352071.0 50 319744.0 51 287417.0 52 254231.5 53 221046.0 54 221046.0 55 190091.5 56 159137.0 57 129791.0 58 100445.0 59 88195.0 60 75945.0 61 75945.0 62 66697.5 63 57450.0 64 49768.5 65 42087.0 66 36479.5 67 30872.0 68 30872.0 69 26360.0 70 21848.0 71 18929.0 72 16010.0 73 13316.5 74 10623.0 75 10623.0 76 8382.5 77 6142.0 78 4599.5 79 3057.0 80 2324.0 81 1591.0 82 1591.0 83 1180.5 84 770.0 85 605.5 86 441.0 87 315.0 88 189.0 89 189.0 90 135.0 91 81.0 92 53.0 93 25.0 94 16.0 95 7.0 96 7.0 97 6.5 98 6.0 99 3.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3056189.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.73810435298947 #Duplication Level Percentage of deduplicated Percentage of total 1 72.93749829184418 28.983979183672954 2 13.837675469915686 10.99765983652624 3 5.232755110272488 6.2381930587694105 4 2.524951768693498 4.013471874824302 5 1.418851032855634 2.8191225202482033 6 0.8286821649094852 1.975815500678061 7 0.5555094146112682 1.545242376082347 8 0.4060236543293189 1.2907688276416478 9 0.27444918758598996 0.9815481410296726 >10 1.6784292133159295 12.703495512783109 >50 0.17420750400180696 4.814316432264912 >100 0.11482350966359713 8.495185699631126 >500 0.008196021138991778 2.160801026497077 >1k 0.0066230473850389425 5.492818650550656 >5k 4.967285538779206E-4 1.1224611413195607 >10k+ 8.278809231298678E-4 6.365120217480758 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 40757 1.3335889894244106 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 38804 1.2696858734849186 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 34539 1.1301329858853624 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14551 0.4761158423121083 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11754 0.38459663325795623 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 10936 0.3578312728695771 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 10831 0.35439562147498077 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10651 0.3485059333699585 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 10424 0.34107838225973586 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10231 0.3347633277915731 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6347 0.20767694668098077 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6219 0.2034887240285205 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5797 0.1896806774711904 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5412 0.17708328902433718 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5248 0.17171712875087242 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5096 0.1667436143510758 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4847 0.15859621247246164 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4461 0.145966103536136 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4281 0.1400764154311137 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4086 0.13369591998400623 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3872 0.12669373523692415 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3827 0.1252213132106686 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3826 0.12518859272119623 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3665 0.11992059391614852 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3502 0.11458715413215609 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3204 0.10483644826939695 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3093 0.10120447393796653 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.2720489472346117E-5 0.0 3 3.2720489472346117E-5 0.0 0.0 3.2720489472346117E-5 0.0 4 3.2720489472346117E-5 0.0 0.0 3.2720489472346117E-5 0.0 5 3.2720489472346117E-5 0.0 0.0 3.2720489472346117E-5 0.0 6 6.544097894469223E-5 0.0 0.0 3.2720489472346117E-5 0.0 7 6.544097894469223E-5 0.0 0.0 6.544097894469223E-5 0.0 8 6.544097894469223E-5 0.0 0.0 6.544097894469223E-5 0.0 9 6.544097894469223E-5 0.0 0.0 1.6360244736173058E-4 0.0 10 6.544097894469223E-5 0.0 0.0 4.253663631404995E-4 0.0 11 6.544097894469223E-5 0.0 0.0 7.198507683916145E-4 0.0 12 6.544097894469223E-5 0.0 0.0 0.0010797761525874218 0.0 13 6.544097894469223E-5 0.0 0.0 0.0013742605578385368 0.0 14 1.3088195788938447E-4 0.0 0.0 0.0016033039841449597 0.0 15 1.3088195788938447E-4 0.0 0.0 0.0020941113262301515 0.0 16 1.6360244736173058E-4 0.0 0.0 0.003141166989345227 0.0 17 1.6360244736173058E-4 0.0 0.0 0.004286384120877341 0.0 18 1.6360244736173058E-4 0.0 0.0 0.005398880762937109 0.0 19 1.6360244736173058E-4 0.0 0.0 0.0069694642576097225 0.0 20 1.6360244736173058E-4 0.0 0.0 0.011484891804793486 0.0 21 1.6360244736173058E-4 0.0 0.0 0.018552517530820246 0.0 22 1.6360244736173058E-4 0.0 0.0 0.02948116101458385 0.0 23 1.6360244736173058E-4 0.0 0.0 0.035861656461691344 0.0 24 1.6360244736173058E-4 0.0 0.0 0.04574324428233987 0.0 25 1.6360244736173058E-4 0.0 0.0 0.0526472675610049 0.0 26 1.963229368340767E-4 0.0 0.0 0.06432848230263247 0.0 27 1.963229368340767E-4 0.0 0.0 0.14832197877814493 0.0 28 1.963229368340767E-4 0.0 0.0 0.2584918668315343 0.0 29 1.963229368340767E-4 0.0 0.0 0.3835168571053688 0.0 30 2.2904342630642282E-4 0.0 0.0 0.5953820264388099 0.0 31 2.2904342630642282E-4 0.0 0.0 0.8964759705633388 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9765 0.0 29.459806 1 CTCGCGA 45 0.0038272378 20.555557 14 ACGTTTA 145 0.0 20.413794 26 GTATTGG 950 0.0 20.057894 1 ATTGGAC 1005 0.0 18.960197 3 TTGGACC 1765 0.0 17.399433 4 GTATCAA 16920 0.0 17.111406 2 GGACCCT 1855 0.0 16.256065 6 ACCGGAT 70 0.002593814 15.857142 8 GTATAAC 200 3.6379788E-12 15.725 1 TCACGTT 200 3.6379788E-12 15.725 24 TGGACCC 2010 0.0 15.646766 5 CCGACCG 255 0.0 15.235294 9 TATACCG 240 0.0 14.645833 5 GACCCTC 2130 0.0 14.591549 7 CGTATAC 115 2.2121063E-5 14.478261 3 TACGTTA 205 9.276846E-11 14.439025 19 CGTGTCT 340 0.0 14.147059 35 CGACCGC 250 0.0 14.059999 10 TTTTTAC 2055 0.0 13.863747 1 >>END_MODULE