##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088340_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3064073 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.023377706732184 31.0 31.0 33.0 30.0 34.0 2 31.33119119551003 31.0 31.0 34.0 30.0 34.0 3 31.397108032347795 31.0 31.0 34.0 28.0 34.0 4 35.27774273001982 37.0 35.0 37.0 33.0 37.0 5 35.04490330354401 35.0 35.0 37.0 32.0 37.0 6 35.10152662811885 37.0 35.0 37.0 32.0 37.0 7 34.911383638705736 36.0 35.0 37.0 32.0 37.0 8 34.98391781135763 36.0 35.0 37.0 32.0 37.0 9 36.46663803375442 38.0 35.0 39.0 32.0 39.0 10 36.279043612864314 38.0 35.0 39.0 32.0 39.0 11 36.3833041836797 38.0 35.0 39.0 32.0 39.0 12 36.14165067216088 38.0 35.0 39.0 31.0 39.0 13 36.21732543578433 38.0 35.0 39.0 32.0 39.0 14 37.042002915726876 39.0 36.0 40.0 31.0 41.0 15 37.17208956836211 39.0 36.0 40.0 31.0 41.0 16 37.14815182275357 39.0 36.0 40.0 31.0 41.0 17 37.237130446957366 39.0 36.0 40.0 32.0 41.0 18 37.247340386472516 39.0 36.0 40.0 32.0 41.0 19 37.342603129886264 39.0 36.0 41.0 32.0 41.0 20 37.327298990591935 39.0 36.0 41.0 31.0 41.0 21 37.252841560889706 39.0 36.0 40.0 31.0 41.0 22 37.17561330947402 39.0 36.0 40.0 31.0 41.0 23 37.054556794175596 39.0 36.0 40.0 31.0 41.0 24 36.96580792951082 39.0 36.0 40.0 31.0 41.0 25 36.8239102005729 39.0 35.0 40.0 30.0 41.0 26 36.60175916174321 38.0 35.0 40.0 30.0 41.0 27 36.46745981574199 38.0 35.0 40.0 30.0 41.0 28 36.30367194254184 38.0 35.0 40.0 30.0 41.0 29 36.082611935159505 38.0 35.0 40.0 30.0 41.0 30 35.846550653329736 38.0 34.0 40.0 29.0 41.0 31 35.58724971630898 38.0 34.0 40.0 28.0 41.0 32 35.465021557906745 38.0 34.0 40.0 27.0 41.0 33 35.27927533058122 38.0 34.0 40.0 27.0 41.0 34 35.41736113989451 38.0 34.0 40.0 27.0 41.0 35 35.32126682360374 38.0 34.0 40.0 27.0 41.0 36 35.24496674850762 38.0 34.0 40.0 26.0 41.0 37 35.123930467714054 38.0 34.0 40.0 26.0 41.0 38 35.08164133165235 38.0 34.0 40.0 25.0 41.0 39 34.960290436944554 38.0 33.0 40.0 25.0 41.0 40 34.74342093024546 38.0 33.0 40.0 24.0 41.0 41 34.60192136414504 38.0 33.0 40.0 23.0 41.0 42 34.424820165838085 38.0 33.0 40.0 23.0 41.0 43 34.04391018099112 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 1.0 14 7.0 15 11.0 16 28.0 17 105.0 18 225.0 19 546.0 20 1232.0 21 2368.0 22 4242.0 23 7367.0 24 12254.0 25 19219.0 26 29328.0 27 42403.0 28 59377.0 29 80072.0 30 103141.0 31 125579.0 32 153154.0 33 186388.0 34 224569.0 35 269325.0 36 331348.0 37 425376.0 38 506251.0 39 480154.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.49684847586856 22.40707058872292 14.516005330160214 22.58007560524831 2 18.344177831272297 23.866598478561052 35.89483670917762 21.89438698098903 3 19.55266731569385 25.293457433944948 33.54433787967845 21.609537370682748 4 13.32993698257189 16.523659847529743 36.50108858372499 33.64531458617337 5 12.019752793095986 38.610959986919376 35.51521128902608 13.854075930958565 6 31.334240404846753 37.31973748667215 13.660999591067183 17.685022517413913 7 24.24886743886324 34.4758757379475 22.071797897765492 19.203458925423774 8 26.150747713908906 34.61373146135879 19.65602647195416 19.57949435277815 9 23.75060907491434 14.593059630106724 23.488735418509936 38.167595876469 10 15.968418507000322 27.683380911616663 34.34262173257622 22.0055788488068 11 31.808967997825118 22.571426986236947 24.99806629933425 20.621538716603684 12 20.85655269962563 27.353591118749453 31.715791366589503 20.07406481503541 13 31.336459673121364 21.485943709565667 27.822509450656042 19.355087166656933 14 19.913853227387207 23.653940359776023 28.94046584399262 27.491740568844147 15 21.30366998436395 29.789956048697274 27.293605602738573 21.6127683642002 16 20.831944930815943 29.101558611691043 28.062125151717993 22.004371305775024 17 20.665989354692268 26.881539702219886 27.887879955862672 24.564590987225174 18 22.771226403548482 25.38164071156268 31.25571747148322 20.59141541340562 19 21.833324467139 24.720102947938905 32.68737396269606 20.759198622226037 20 23.11279790005003 23.96790154803753 32.78329204297678 20.136008508935653 21 21.80985896876478 24.990494678162044 33.436997095043104 19.76264925803008 22 19.87302521839395 25.287060719506353 32.885933200677655 21.953980861422036 23 21.341462817628692 25.59880263949325 34.149219029703275 18.910515513174783 24 21.18986721269369 25.472728619716307 31.301473561498046 22.03593060609196 25 20.8982618886691 26.287689620971822 32.36675496961071 20.447293520748364 26 20.66080018328545 27.063552337036356 32.08908534489876 20.186562134779425 27 19.09778259199438 27.22360074319378 31.85482199673441 21.823794668077426 28 20.09691022374467 26.43974213408101 31.895193097553488 21.568154544620835 29 20.234765947155957 26.307140854672852 30.974294672483328 22.483798525687867 30 20.650356567875505 26.490361032521093 33.05293313834233 19.806349261261072 31 21.751407358767235 25.99399557386524 32.65705484170906 19.59754222565846 32 21.094797676165026 26.226300744140236 31.29125840017519 21.387643179519547 33 20.545855141179732 26.147940992267483 32.15158385586766 21.154620010685125 34 19.46102459047157 27.030263312917153 32.93544246498043 20.57326963163084 35 19.107018664372553 29.42188387809298 31.299058475434492 20.17203898209997 36 21.863480406635222 26.611343789785685 30.89006038694248 20.635115416636616 37 20.88752454657575 27.543436465123385 30.826941786308616 20.742097201992248 38 20.56984282032445 25.655785616073768 32.36058670925921 21.41378485434257 39 20.125140621649678 25.3533124047632 33.14865540083412 21.372891572753 40 18.566985838783868 25.954864652376102 32.72154416686547 22.756605341974552 41 20.608125198061533 25.069931427873943 32.61508456228034 21.706858811784183 42 18.96544240297147 27.644152081233052 31.8311280442731 21.559277471522382 43 19.39141136650465 27.803547761427357 30.607071045631095 22.197969826436903 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 278.0 1 387.5 2 497.0 3 1392.5 4 2288.0 5 2288.0 6 3838.5 7 5389.0 8 5965.0 9 6541.0 10 10342.0 11 14143.0 12 14143.0 13 26066.0 14 37989.0 15 61985.0 16 85981.0 17 84110.0 18 82239.0 19 82239.0 20 87498.5 21 92758.0 22 76091.0 23 59424.0 24 65440.0 25 71456.0 26 71456.0 27 74825.0 28 78194.0 29 81512.0 30 84830.0 31 91562.5 32 98295.0 33 98295.0 34 106675.5 35 115056.0 36 125372.0 37 135688.0 38 141028.0 39 146368.0 40 146368.0 41 152270.0 42 158172.0 43 165049.0 44 171926.0 45 188573.0 46 205220.0 47 205220.0 48 284124.5 49 363029.0 50 329589.0 51 296149.0 52 261383.0 53 226617.0 54 226617.0 55 192711.5 56 158806.0 57 129738.5 58 100671.0 59 88272.5 60 75874.0 61 75874.0 62 66761.0 63 57648.0 64 50465.0 65 43282.0 66 36859.5 67 30437.0 68 30437.0 69 25908.5 70 21380.0 71 18109.0 72 14838.0 73 12395.5 74 9953.0 75 9953.0 76 8032.5 77 6112.0 78 4637.5 79 3163.0 80 2409.0 81 1655.0 82 1655.0 83 1253.0 84 851.0 85 665.0 86 479.0 87 367.5 88 256.0 89 256.0 90 181.5 91 107.0 92 64.0 93 21.0 94 14.5 95 8.0 96 8.0 97 6.0 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3064073.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.99650712658455 #Duplication Level Percentage of deduplicated Percentage of total 1 72.73775524406113 28.365183907467923 2 13.569063972416076 10.582921998028102 3 5.35520188342902 6.265025052343162 4 2.601162655335301 4.057450321047546 5 1.457529325513142 2.8419276364789603 6 0.8735970354932022 2.044033981222428 7 0.6090184810549517 1.6624715475676783 8 0.4226699110104722 1.3186120157530186 9 0.3063283237229349 1.0751161193222514 >10 1.7641556075865317 12.886778427275939 >50 0.16839186048933646 4.571665859779214 >100 0.11852673610587286 8.743794713799298 >500 0.008341611240732353 2.2071670563267176 >1k 0.006824954651501345 5.614372152206144 >5k 5.898108958087582E-4 1.3260154187702269 >10k+ 8.425869940125117E-4 6.437463792611391 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 41157 1.3432121232098582 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 39310 1.2829328805155753 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 34823 1.1364938106892362 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14131 0.46118352924359174 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 11602 0.3786463312068609 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11337 0.36999771219549926 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 11233 0.36660353718726674 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11222 0.36624453790754985 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 10899 0.35570301360313544 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10204 0.3330207863846586 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6978 0.2277360885331387 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6236 0.20351995530132602 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5921 0.19323952138216027 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5812 0.18968216488314738 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5225 0.17052465786552734 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5114 0.16690202877020227 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5070 0.1654660316513347 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4520 0.1475160676654897 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4457 0.14545998088165654 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4143 0.13521218326064685 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3963 0.12933764959255212 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3916 0.12780374357921628 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3748 0.12232084548899455 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3691 0.12046057649409789 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3533 0.11530404138543697 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3497 0.11412913465181802 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3205 0.10459933559024213 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 3089 0.10081352500413666 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.263629815608179E-5 0.0 0.0 0.0 0.0 7 3.263629815608179E-5 0.0 0.0 3.263629815608179E-5 0.0 8 3.263629815608179E-5 0.0 0.0 3.263629815608179E-5 0.0 9 3.263629815608179E-5 0.0 0.0 3.263629815608179E-5 0.0 10 3.263629815608179E-5 0.0 0.0 9.790889446824537E-5 0.0 11 3.263629815608179E-5 0.0 0.0 3.916355778729815E-4 0.0 12 3.263629815608179E-5 0.0 0.0 0.0010117252428385355 0.0 13 3.263629815608179E-5 0.0 0.0 0.0012075430317750263 0.0 14 6.527259631216358E-5 0.0 0.0 0.0013054519262432715 0.0 15 6.527259631216358E-5 0.0 0.0 0.0016318149078040896 0.0 16 6.527259631216358E-5 0.0 0.0 0.002382449765393971 0.0 17 6.527259631216358E-5 0.0 0.0 0.003524720200856833 0.0 18 9.790889446824537E-5 0.0 0.0 0.004242718760290633 0.0 19 9.790889446824537E-5 0.0 0.0 0.005319716599441332 0.0 20 9.790889446824537E-5 0.0 0.0 0.008485437520581266 0.0 21 9.790889446824537E-5 0.0 0.0 0.014849515661017214 0.0 22 9.790889446824537E-5 0.0 0.0 0.023955042846564033 0.0 23 9.790889446824537E-5 0.0 0.0 0.02989484911097092 0.0 24 9.790889446824537E-5 0.0 0.0 0.03896773999836166 0.0 25 9.790889446824537E-5 0.0 0.0 0.04657199746872871 0.0 26 9.790889446824537E-5 0.0 0.0 0.05832106480491816 0.0 27 9.790889446824537E-5 0.0 0.0 0.14451352823513017 0.0 28 9.790889446824537E-5 0.0 0.0 0.2554443056676522 0.0 29 9.790889446824537E-5 0.0 0.0 0.37499106581337976 0.0 30 1.3054519262432717E-4 0.0 0.0 0.5855604615164195 0.0 31 1.3054519262432717E-4 0.0 0.0 0.8734778838493731 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9835 0.0 29.663956 1 ATTGGAC 1020 0.0 23.578432 3 GTATTGG 1005 0.0 23.378109 1 TTGGACC 1805 0.0 19.166204 4 TGGACCC 1860 0.0 18.698925 5 GGACCCT 1810 0.0 18.60221 6 ACGTTTA 195 0.0 18.025642 26 GACCCTC 1875 0.0 17.562668 7 TATACCG 255 0.0 17.411764 5 GTATCAA 17115 0.0 17.132633 2 CAATGCG 220 0.0 16.818182 19 TATTGGA 1475 0.0 16.305084 2 GTAGTGT 175 1.3278623E-10 15.857143 6 CTGTGCG 280 0.0 15.857142 9 CGTGTCT 345 0.0 15.550725 35 CGACGAG 250 0.0 15.540001 24 GACCGTG 265 0.0 15.358491 7 CGAATTA 265 0.0 15.358491 15 CGGTATA 230 0.0 15.282607 26 CCGACCG 280 0.0 15.196428 9 >>END_MODULE