##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088337_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1768008 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.89668711906281 31.0 31.0 33.0 28.0 34.0 2 31.212462273926363 31.0 31.0 34.0 28.0 34.0 3 31.263582517726164 31.0 31.0 34.0 28.0 34.0 4 35.158278129963215 35.0 35.0 37.0 33.0 37.0 5 34.92866604675997 35.0 35.0 37.0 32.0 37.0 6 34.98783263424147 36.0 35.0 37.0 32.0 37.0 7 34.775366401057006 35.0 35.0 37.0 32.0 37.0 8 34.85779872036778 35.0 35.0 37.0 32.0 37.0 9 36.3011213750164 38.0 35.0 39.0 32.0 39.0 10 36.12655768525934 38.0 35.0 39.0 31.0 39.0 11 36.223165845403415 38.0 35.0 39.0 32.0 39.0 12 35.96968678874756 38.0 35.0 39.0 30.0 39.0 13 36.04527015714861 38.0 35.0 39.0 30.0 39.0 14 36.80284138985797 38.0 36.0 40.0 31.0 41.0 15 36.94241089406835 38.0 36.0 40.0 31.0 41.0 16 36.9073058492948 38.0 36.0 40.0 31.0 41.0 17 37.03414520748775 38.0 36.0 40.0 31.0 41.0 18 37.055829498509055 39.0 36.0 40.0 31.0 41.0 19 37.1544461337279 39.0 36.0 40.0 31.0 41.0 20 37.14832512070081 39.0 36.0 40.0 31.0 41.0 21 37.07801774652604 39.0 36.0 40.0 31.0 41.0 22 37.00353165822779 39.0 36.0 40.0 31.0 41.0 23 36.8553716951507 39.0 35.0 40.0 31.0 41.0 24 36.76342754105185 39.0 35.0 40.0 30.0 41.0 25 36.62629128374985 38.0 35.0 40.0 30.0 41.0 26 36.36905602237094 38.0 35.0 40.0 30.0 41.0 27 36.24190105474636 38.0 35.0 40.0 30.0 41.0 28 36.06277234039665 38.0 34.0 40.0 30.0 41.0 29 35.825646150922395 38.0 34.0 40.0 29.0 41.0 30 35.562333993963826 38.0 34.0 40.0 27.0 41.0 31 35.26156046805218 37.0 34.0 40.0 27.0 41.0 32 35.13950559047244 37.0 33.0 40.0 27.0 41.0 33 34.93766487481957 37.0 33.0 40.0 26.0 41.0 34 35.03654508350641 37.0 33.0 40.0 26.0 41.0 35 34.91045063144511 37.0 33.0 40.0 25.0 41.0 36 34.81670162125963 37.0 33.0 40.0 25.0 41.0 37 34.66191499133488 37.0 33.0 40.0 24.0 41.0 38 34.58268627743766 37.0 33.0 40.0 24.0 41.0 39 34.43400425789928 37.0 33.0 40.0 23.0 41.0 40 34.19172933606635 37.0 33.0 40.0 22.0 41.0 41 34.02337885348935 37.0 33.0 40.0 21.0 41.0 42 33.793094262016915 37.0 33.0 40.0 20.0 41.0 43 33.39154008352904 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 3.0 15 10.0 16 27.0 17 69.0 18 175.0 19 400.0 20 800.0 21 1745.0 22 3017.0 23 5283.0 24 8594.0 25 13404.0 26 20150.0 27 28632.0 28 39378.0 29 51925.0 30 65311.0 31 78622.0 32 94602.0 33 112937.0 34 133028.0 35 157132.0 36 191535.0 37 242489.0 38 273467.0 39 245272.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.449873529984025 22.592318586793724 15.01961529585839 21.938192587363858 2 18.33436274044009 24.245478527246483 36.160696105447485 21.25946262686594 3 19.59595205451559 25.298245256808794 34.348713354238214 20.7570893344374 4 13.015156040017919 16.494156135040114 36.55294546178524 33.93774236315672 5 11.548533717042005 39.133250528278154 35.54859480273845 13.769620951941395 6 31.057664897443903 37.28620006244316 13.167361233659577 18.488773806453366 7 23.70068461228682 35.14209211723024 21.717944715182284 19.439278555300653 8 26.316792684196 34.42755915131605 19.47434626992638 19.78130189456156 9 23.400007239786245 14.640997099560634 24.007357432771798 37.951638227881325 10 16.00773299668327 27.784998710413074 34.19526382233565 22.012004470568005 11 31.071126374993778 22.587228112089992 25.422792204560164 20.91885330835607 12 21.24232469536337 27.59749955882553 31.866032280396922 19.294143465414184 13 31.953249080320905 21.44933733331523 28.19121859177108 18.406194994592784 14 19.740804340251856 23.962278451228727 29.499583712290896 26.797333496228525 15 20.81003027135624 30.14070072081122 27.936185809113983 21.113083198718556 16 20.31353930525201 29.17170058054036 28.650209727557797 21.864550386649835 17 20.36727209379143 26.812435237849602 28.0231763657178 24.797116302641165 18 22.75990832620667 24.954638214306723 32.06173275234049 20.22372070714612 19 21.591870625019798 24.225851919222087 33.73774326813001 20.44453418762811 20 22.899274211428907 23.467767114175956 33.834009800860635 19.79894887353451 21 21.636214315772325 24.470138144171294 34.775068891090996 19.11857864896539 22 19.1477640372668 25.06736394857942 33.989212718494485 21.795659295659295 23 21.073886543499803 25.473414147447297 35.385586490558865 18.06711281849403 24 20.837971321396736 25.128958692494603 32.26071375242646 21.7723562336822 25 20.450473074782465 26.155311514427538 33.40245066764404 19.99176474314596 26 20.149908823941974 27.056551780308684 33.18027972724105 19.613259668508288 27 18.390075158030957 27.206494540748682 32.85420654205184 21.54922375916851 28 19.555171696055673 26.373466635897575 32.8106547029199 21.260706965126854 29 19.743971746734175 26.28195121289044 31.671010538413853 22.30306650196153 30 20.176266170741307 26.5258980728594 34.18406477798743 19.11377097841186 31 21.635761829131994 25.95814046090289 33.65488165211922 18.751216057845895 32 20.681467504671925 26.257347251822388 31.99606562866231 21.065119614843372 33 20.061221442436914 26.16334315229343 32.99566517798562 20.77977022728404 34 18.76699652942747 27.373801476011423 33.92812702204967 19.931074972511436 35 18.195675585178346 30.38747562228225 31.91591893249352 19.500929860045883 36 21.5320292668359 27.162716458296572 31.50019683168854 19.80505744317899 37 20.412916683634915 28.452190261582526 31.207494536223816 19.92739851855874 38 20.21110764204687 26.20440631490355 32.84272469355342 20.74176134949616 39 19.663259442264966 25.72380894204099 33.81749403848852 20.795437577205533 40 17.789116338840095 26.6508975072511 33.196569246293 22.3634169076158 41 20.409918959642717 25.44897986886937 33.110540223799894 21.03056094768802 42 18.55749521495378 28.472665282057548 32.11144972194696 20.858389781041716 43 19.078646702956096 28.7209673259397 30.583685141696193 21.61670082940801 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 128.0 1 193.5 2 259.0 3 754.5 4 1250.0 5 1250.0 6 2278.5 7 3307.0 8 3809.0 9 4311.0 10 6767.5 11 9224.0 12 9224.0 13 17320.5 14 25417.0 15 42276.5 16 59136.0 17 57017.0 18 54898.0 19 54898.0 20 57703.5 21 60509.0 22 48222.5 23 35936.0 24 38651.0 25 41366.0 26 41366.0 27 43838.0 28 46310.0 29 47401.0 30 48492.0 31 51200.5 32 53909.0 33 53909.0 34 59053.0 35 64197.0 36 70059.0 37 75921.0 38 78483.5 39 81046.0 40 81046.0 41 83213.0 42 85380.0 43 89354.5 44 93329.0 45 104265.5 46 115202.0 47 115202.0 48 169397.0 49 223592.0 50 202528.5 51 181465.0 52 158169.5 53 134874.0 54 134874.0 55 112930.0 56 90986.0 57 71260.5 58 51535.0 59 44950.5 60 38366.0 61 38366.0 62 33266.5 63 28167.0 64 23981.5 65 19796.0 66 16887.0 67 13978.0 68 13978.0 69 11836.0 70 9694.0 71 8122.0 72 6550.0 73 5423.5 74 4297.0 75 4297.0 76 3389.0 77 2481.0 78 1890.5 79 1300.0 80 1012.0 81 724.0 82 724.0 83 531.5 84 339.0 85 261.5 86 184.0 87 138.5 88 93.0 89 93.0 90 66.5 91 40.0 92 29.0 93 18.0 94 9.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1768008.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.35791803210245 #Duplication Level Percentage of deduplicated Percentage of total 1 75.52093549787317 31.23388660028735 2 12.89641094579915 10.667374136093402 3 4.6144317356519835 5.725298684634809 4 2.1993288202359245 3.6383864429183177 5 1.1262667423238775 2.329002380565699 6 0.7474006973905886 1.8546562067889703 7 0.4735297410473494 1.3708942951199283 8 0.3375674573912215 1.11688697864731 9 0.2640212623498901 0.9827432754299074 >10 1.5540823138753304 12.253213881474172 >50 0.15597313926552958 4.478538442456645 >100 0.09175568810728087 7.152222857463999 >500 0.00839137954896454 2.3916864552697525 >1k 0.008528943148127893 7.121636425100891 >5k 9.629451941434718E-4 3.1742557305025287 >10k+ 4.126907974900593E-4 4.509317207246428 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28085 1.5885109117153315 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 27410 1.5503323514373237 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 23764 1.3441115651060402 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9527 0.538855027805304 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8386 0.4743191207279605 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8103 0.45831240582621796 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7792 0.44072198768331367 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7702 0.43563151297957925 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7451 0.4214347446391645 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6832 0.3864235908434804 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4744 0.26832457771684287 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4359 0.24654865815086807 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4228 0.2391391894154325 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4208 0.23800797281460262 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3656 0.20678639463169848 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3656 0.20678639463169848 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3584 0.20271401486871102 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2975 0.16826846937344175 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2963 0.16758973941294383 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2956 0.16719381360265337 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2896 0.16380016380016382 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2587 0.14632286731734245 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2509 0.14191112257410599 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2476 0.14004461518273673 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2415 0.13659440455020566 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 2387 0.13501070130904386 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2238 0.1265831376328614 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 2201 0.12449038692132613 No Hit ATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGGA 2063 0.11668499237560011 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 2053 0.11611938407518518 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCCT 1978 0.1118773218220732 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1975 0.11170763933194873 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 1972 0.11153795684182424 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 1953 0.11046330107103589 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 1910 0.10803118537925167 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 1896 0.10723933375867077 No Hit TCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGAT 1859 0.10514658304713555 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 1818 0.10282758901543432 No Hit ACGCACATGCGAGGGTCCAAAAAAAAAAAAAAAAAAAAAAAAA 1792 0.10135700743435551 No Hit GCCGAGGGGAGAAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAA 1788 0.10113076411418953 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 1774 0.10033891249360864 No Hit CGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAG 1769 0.10005610834340115 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 5.6560830041493025E-5 0.0 0.0 0.0 0.0 3 5.6560830041493025E-5 0.0 0.0 0.0 0.0 4 5.6560830041493025E-5 0.0 0.0 0.0 0.0 5 1.1312166008298605E-4 0.0 0.0 0.0 0.0 6 1.6968249012447908E-4 0.0 0.0 0.0 5.6560830041493025E-5 7 1.6968249012447908E-4 0.0 0.0 0.0 5.6560830041493025E-5 8 1.6968249012447908E-4 0.0 0.0 0.0 5.6560830041493025E-5 9 1.6968249012447908E-4 0.0 0.0 5.6560830041493025E-5 5.6560830041493025E-5 10 1.6968249012447908E-4 0.0 0.0 1.1312166008298605E-4 5.6560830041493025E-5 11 1.6968249012447908E-4 0.0 0.0 2.828041502074651E-4 1.1312166008298605E-4 12 1.6968249012447908E-4 0.0 0.0 6.787299604979163E-4 1.1312166008298605E-4 13 2.262433201659721E-4 0.0 0.0 8.484124506223954E-4 1.1312166008298605E-4 14 2.262433201659721E-4 0.0 0.0 0.0011312166008298605 1.1312166008298605E-4 15 2.262433201659721E-4 0.0 0.0 0.0014705815810788186 1.1312166008298605E-4 16 2.262433201659721E-4 0.0 0.0 0.002545237351867186 1.1312166008298605E-4 17 2.828041502074651E-4 0.0 0.0 0.0035067714625725676 1.1312166008298605E-4 18 2.828041502074651E-4 0.0 0.0 0.004015818932946005 1.1312166008298605E-4 19 2.828041502074651E-4 0.0 0.0 0.005203596363817359 1.1312166008298605E-4 20 2.828041502074651E-4 0.0 0.0 0.008144759525974996 1.1312166008298605E-4 21 2.828041502074651E-4 0.0 0.0 0.013913964190207285 1.1312166008298605E-4 22 2.828041502074651E-4 0.0 0.0 0.022963696996846167 1.1312166008298605E-4 23 2.828041502074651E-4 0.0 0.0 0.027997610870539046 1.6968249012447908E-4 24 2.828041502074651E-4 0.0 0.0 0.03467178881543522 1.6968249012447908E-4 25 2.828041502074651E-4 0.0 0.0 0.04049755430970901 1.6968249012447908E-4 26 3.3936498024895816E-4 0.0 0.0 0.05067850371717775 1.6968249012447908E-4 27 3.3936498024895816E-4 0.0 0.0 0.13416228885842146 1.6968249012447908E-4 28 3.3936498024895816E-4 0.0 0.0 0.2368201953837313 1.6968249012447908E-4 29 3.3936498024895816E-4 0.0 0.0 0.35706852005194545 1.6968249012447908E-4 30 3.9592581029045115E-4 0.0 0.0 0.5681535377667974 1.6968249012447908E-4 31 4.524866403319442E-4 0.0 0.0 0.8379486970647192 1.6968249012447908E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6845 0.0 29.945942 1 GTATTGG 745 0.0 21.107382 1 ATTGGAC 695 0.0 21.028776 3 GTCGTCA 45 0.0038266103 20.555555 24 CGTATAC 65 6.904817E-5 19.923077 3 TTGGACC 1245 0.0 19.614458 4 ACGTTTA 135 5.638867E-11 19.185186 26 ACCGTCC 60 9.239494E-4 18.5 8 GGACCCT 1275 0.0 17.84706 6 TGGACCC 1330 0.0 17.80451 5 ACGGGCG 105 4.800877E-7 17.619047 5 CTTAGAC 200 0.0 17.575 3 TAATACT 265 0.0 17.452831 4 GACCCTC 1305 0.0 17.153255 7 GTATCAA 12325 0.0 16.676268 2 GATACTG 650 0.0 16.507692 36 CTAATAC 180 1.0913936E-11 16.444445 3 TCACGTT 150 4.6748028E-9 16.033333 24 CGTTGAC 185 1.8189894E-11 16.0 32 CAGACGT 70 0.0025932342 15.857142 4 >>END_MODULE