##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088336_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3115948 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.913321403309684 31.0 31.0 33.0 28.0 34.0 2 31.2315799236701 31.0 31.0 34.0 28.0 34.0 3 31.292800778446882 31.0 31.0 34.0 28.0 34.0 4 35.18400724273961 35.0 35.0 37.0 33.0 37.0 5 34.93989116634809 35.0 35.0 37.0 32.0 37.0 6 34.990147139811064 36.0 35.0 37.0 32.0 37.0 7 34.79129080459622 35.0 35.0 37.0 32.0 37.0 8 34.85673092105517 35.0 35.0 37.0 32.0 37.0 9 36.32750000962789 38.0 35.0 39.0 32.0 39.0 10 36.1256266150783 38.0 35.0 39.0 31.0 39.0 11 36.22475567628214 38.0 35.0 39.0 32.0 39.0 12 35.97987033159732 38.0 35.0 39.0 30.0 39.0 13 36.05538571247017 38.0 35.0 39.0 30.0 39.0 14 36.85228123190759 38.0 36.0 40.0 31.0 41.0 15 36.985259702665125 38.0 36.0 40.0 31.0 41.0 16 36.959257022260964 38.0 36.0 40.0 31.0 41.0 17 37.04425651519217 39.0 36.0 40.0 31.0 41.0 18 37.05537865201858 39.0 36.0 40.0 31.0 41.0 19 37.14291348892857 39.0 36.0 40.0 31.0 41.0 20 37.12660288297494 39.0 36.0 40.0 31.0 41.0 21 37.05665948212229 39.0 36.0 40.0 31.0 41.0 22 36.97426946791153 39.0 36.0 40.0 31.0 41.0 23 36.849096005453234 39.0 35.0 40.0 31.0 41.0 24 36.7621266465294 39.0 35.0 40.0 30.0 41.0 25 36.617094380265655 38.0 35.0 40.0 30.0 41.0 26 36.364743249887354 38.0 35.0 40.0 30.0 41.0 27 36.24550152955056 38.0 35.0 40.0 30.0 41.0 28 36.071441179377835 38.0 34.0 40.0 29.0 41.0 29 35.84771408251999 38.0 34.0 40.0 29.0 41.0 30 35.61537836960052 38.0 34.0 40.0 27.0 41.0 31 35.35758074268249 38.0 34.0 40.0 27.0 41.0 32 35.24480061926579 37.0 34.0 40.0 27.0 41.0 33 35.05238790891247 37.0 33.0 40.0 26.0 41.0 34 35.18965079006453 38.0 33.0 40.0 27.0 41.0 35 35.09605198803061 38.0 33.0 40.0 26.0 41.0 36 35.02757234716369 38.0 33.0 40.0 25.0 41.0 37 34.90961883831181 38.0 33.0 40.0 25.0 41.0 38 34.85773671447662 38.0 33.0 40.0 25.0 41.0 39 34.737530921568656 38.0 33.0 40.0 24.0 41.0 40 34.53147324666522 38.0 33.0 40.0 23.0 41.0 41 34.391107938900134 38.0 33.0 40.0 23.0 41.0 42 34.21983261594866 38.0 33.0 40.0 22.0 41.0 43 33.83697641937542 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 0.0 14 4.0 15 17.0 16 50.0 17 117.0 18 270.0 19 714.0 20 1513.0 21 2839.0 22 5252.0 23 9088.0 24 14590.0 25 22808.0 26 34053.0 27 48957.0 28 67205.0 29 88293.0 30 112426.0 31 135588.0 32 162722.0 33 195078.0 34 230481.0 35 273613.0 36 333911.0 37 421861.0 38 498877.0 39 455619.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.74310611088504 22.178354709385395 14.299468412181463 22.77907076754811 2 18.520784043892903 23.724401049054734 35.84427596352699 21.910538943525374 3 19.6068740556646 25.26357949490813 33.199206148497986 21.93034030092928 4 13.247685776527721 16.290547852531557 36.59650289414329 33.86526347679743 5 12.043108549950128 38.558698668912314 35.593950861824396 13.80424191931316 6 31.52411400960478 37.395264619306865 13.52824244820517 17.55237892288318 7 24.629262105786104 34.054997066703294 21.988492747632502 19.3272480798781 8 26.281311498137967 34.47711579268974 19.49265520477235 19.748917504399945 9 23.906175584444927 14.350688779145223 23.105359909728918 38.637775726680935 10 15.9854400651102 27.390829371992087 34.380162955222616 22.243567607675097 11 32.09838546727995 22.34754880376694 24.733500045572004 20.82056568338111 12 21.26396204301227 27.15924655995543 31.431557907898334 20.145233489133965 13 31.589936674167863 21.32368704484157 27.5410565259754 19.545319755015168 14 20.174502270256113 23.218583878806704 28.69184594864869 27.915067902288488 15 21.596766056429697 29.602162808878713 27.089925762560863 21.711145372130726 16 21.180648714291767 28.667166461057757 27.751169146596798 22.401015678053675 17 21.011615084719 26.55342772087339 27.546351864665265 24.888605329742344 18 22.896595193501305 25.176735940394384 31.10555760237334 20.821111263730973 19 22.077165600966385 24.27771580270274 32.41209416845211 21.23302442787877 20 23.302571159724103 23.761372140998503 32.50381585315288 20.432240846124518 21 22.0494051890468 24.732794000413357 33.06033990297656 20.157460907563284 22 20.231242626642036 25.07538636716659 32.46248011841019 22.230890887781182 23 21.701292832871406 25.474398160688178 33.726846532740595 19.097462473699817 24 21.59583536053875 25.25080649612895 30.86126597748101 22.29209216585129 25 21.2855285133128 25.886535975568272 32.016676786647274 20.811258724471653 26 21.020248091431565 26.774708692186135 31.79536372237277 20.409679494009527 27 19.52831048528409 26.85612853616299 31.52369680110194 22.091864177450972 28 20.434294795676948 26.074119337036432 31.679315572660393 21.812270294626227 29 20.66712923322212 26.079510954611568 30.601794381677745 22.65156543048857 30 20.967551448226992 26.19440375770071 32.68206016274983 20.155984631322475 31 22.073507003326114 25.864969505267737 32.335231525044705 19.726291966361444 32 21.285303862580506 26.01904781466186 30.927088642044094 21.768559680713544 33 20.891555314787023 25.9378526214173 31.808553929654792 21.362038134140878 34 19.77257001721466 26.74470177294358 32.721983807175214 20.76074440266654 35 19.393552138867527 29.256232774102774 30.891754291149915 20.458460795879777 36 22.116768315774205 26.49575666859652 30.65041521873921 20.737059796890065 37 21.03237923097561 27.64038424261252 30.468351846693203 20.85888467971866 38 20.927788268610385 25.675524752017687 31.916065351539885 21.480621627832043 39 20.377105137826433 25.402445740429556 32.736874941430344 21.483574180313664 40 18.809749071550616 26.096680689151423 32.27277862146609 22.820791617831876 41 20.994830465720224 24.973555399512442 32.171332769353015 21.860281365414313 42 19.290469545704873 27.572924836999846 31.42337420265037 21.713231414644916 43 19.859959152078275 27.673632550992505 30.14142084527726 22.324987451651953 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 298.0 1 405.5 2 513.0 3 1345.0 4 2177.0 5 2177.0 6 3782.5 7 5388.0 8 6136.5 9 6885.0 10 10732.5 11 14580.0 12 14580.0 13 26125.0 14 37670.0 15 62003.0 16 86336.0 17 83838.5 18 81341.0 19 81341.0 20 85098.5 21 88856.0 22 71754.5 23 54653.0 24 59616.0 25 64579.0 26 64579.0 27 69797.5 28 75016.0 29 78116.5 30 81217.0 31 88686.5 32 96156.0 33 96156.0 34 105785.0 35 115414.0 36 125946.5 37 136479.0 38 144306.0 39 152133.0 40 152133.0 41 156752.5 42 161372.0 43 169356.0 44 177340.0 45 191805.5 46 206271.0 47 206271.0 48 284701.5 49 363132.0 50 331014.0 51 298896.0 52 265591.0 53 232286.0 54 232286.0 55 200189.5 56 168093.0 57 137925.0 58 107757.0 59 95364.0 60 82971.0 61 82971.0 62 73970.0 63 64969.0 64 57065.5 65 49162.0 66 42402.5 67 35643.0 68 35643.0 69 30590.0 70 25537.0 71 21488.5 72 17440.0 73 14364.5 74 11289.0 75 11289.0 76 9023.0 77 6757.0 78 5114.0 79 3471.0 80 2765.0 81 2059.0 82 2059.0 83 1504.5 84 950.0 85 702.5 86 455.0 87 359.5 88 264.0 89 264.0 90 183.5 91 103.0 92 63.5 93 24.0 94 16.0 95 8.0 96 8.0 97 6.0 98 4.0 99 4.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3115948.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.520918078475404 #Duplication Level Percentage of deduplicated Percentage of total 1 73.00619303835619 28.85271774290236 2 13.716982434642697 10.842154781668002 3 5.297369404298596 6.280707067761206 4 2.529271577999816 3.9983653932938776 5 1.3882485517027756 2.7432428642203757 6 0.858219349067409 2.0350569952713338 7 0.5426218257714255 1.501143890673368 8 0.4029740178498677 1.2740722517758964 9 0.28537626999650567 1.01504989692655 >10 1.6739873776237881 12.602731026242022 >50 0.16604176835333403 4.581253557124407 >100 0.1152763481416757 8.582591021065596 >500 0.009251164742467751 2.4011491193766767 >1k 0.0067951033063997765 5.547990091197457 >5k 5.730810017445594E-4 1.331969301423131 >10k+ 8.186871453493707E-4 6.409804999077713 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 40756 1.3079807493578197 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 40065 1.2858045127839104 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 35397 1.1359945673034337 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14093 0.45228611003777985 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11823 0.3794350868499731 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 11812 0.37908206427064894 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11467 0.3680099924645726 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 11162 0.3582216391287659 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 10829 0.34753468286377054 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10703 0.3434909696824209 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7068 0.2268330536966599 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6575 0.21101122355058557 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6202 0.19904054881532043 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5747 0.18443825121600232 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5245 0.1683275844141173 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5227 0.16774991110249593 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5103 0.16377038384465978 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4385 0.14072763730331828 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4256 0.13658764523669845 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4165 0.1336671857168348 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4031 0.12936672884143124 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3997 0.128275568141702 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3814 0.122402556140218 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3685 0.11826256407359816 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3512 0.11271048168968159 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3504 0.11245373799562766 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3159 0.1013816661895513 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 6.41859235134861E-5 0.0 5 3.209296175674305E-5 0.0 0.0 6.41859235134861E-5 0.0 6 6.41859235134861E-5 0.0 0.0 6.41859235134861E-5 0.0 7 6.41859235134861E-5 0.0 0.0 9.627888527022915E-5 0.0 8 1.283718470269722E-4 0.0 0.0 1.283718470269722E-4 0.0 9 1.283718470269722E-4 0.0 0.0 1.283718470269722E-4 0.0 10 1.283718470269722E-4 0.0 0.0 1.6046480878371527E-4 0.0 11 1.283718470269722E-4 0.0 0.0 3.2092961756743053E-4 0.0 12 1.283718470269722E-4 0.0 0.0 5.455803498646319E-4 0.0 13 1.283718470269722E-4 0.0 0.0 6.739521968916041E-4 0.0 14 1.283718470269722E-4 0.0 0.0 7.702310821618332E-4 0.0 15 1.283718470269722E-4 0.0 0.0 0.0011232536614860069 0.0 16 1.283718470269722E-4 0.0 0.0 0.0016367410495938958 0.0 17 1.283718470269722E-4 0.0 0.0 0.002503251017025958 0.0 18 1.283718470269722E-4 0.0 0.0 0.0032734820991877915 0.0 19 1.283718470269722E-4 0.0 0.0 0.00420417799013334 0.0 20 1.6046480878371527E-4 0.0 0.0 0.006418592351348611 0.0 21 1.6046480878371527E-4 0.0 0.0 0.012355790276346075 0.0 22 1.6046480878371527E-4 0.0 0.0 0.01986554332742395 0.0 23 1.925577705404583E-4 0.0 0.0 0.02471158055269215 0.0 24 1.925577705404583E-4 0.0 0.0 0.032413891374310486 0.0 25 1.925577705404583E-4 0.0 0.0 0.037677137102416346 0.0 26 1.925577705404583E-4 0.0 0.0 0.048107349673357835 0.0 27 1.925577705404583E-4 0.0 0.0 0.1264141763598109 0.0 28 1.925577705404583E-4 0.0 0.0 0.22140934315977032 0.0 29 1.925577705404583E-4 0.0 0.0 0.33331750080553335 0.0 30 1.925577705404583E-4 0.0 0.0 0.52096504819721 0.0 31 1.925577705404583E-4 0.0 0.0 0.7859566334226373 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9920 0.0 29.987902 1 GTATTGG 1175 0.0 20.310638 1 ATTGGAC 1265 0.0 19.596836 3 TAACGTG 50 0.00703752 18.499998 5 GTATCAA 17695 0.0 16.832438 2 TTGGACC 2070 0.0 16.623188 4 GGACCCT 2015 0.0 16.342432 6 TGGACCC 2100 0.0 16.033335 5 GATACTG 1200 0.0 15.570832 36 TATACCG 275 0.0 15.472727 5 TATTGGA 1680 0.0 14.97619 2 TGATACT 1255 0.0 14.888446 35 ACGTTTA 295 0.0 14.423729 26 TTTTTAC 2400 0.0 14.183332 1 GACCCTC 2305 0.0 14.045553 7 TAATACT 790 0.0 13.816457 4 CTAATAC 555 0.0 13.666667 3 TTGATAC 3680 0.0 13.523098 34 ATACTGT 1460 0.0 13.304794 37 GTATTAG 445 0.0 13.303371 1 >>END_MODULE