##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088335_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3699611 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.938510562326687 31.0 31.0 33.0 28.0 34.0 2 31.25348205527554 31.0 31.0 34.0 28.0 34.0 3 31.321728149256774 31.0 31.0 34.0 28.0 34.0 4 35.206718219834464 35.0 35.0 37.0 33.0 37.0 5 34.96338209611767 35.0 35.0 37.0 32.0 37.0 6 35.00686045100417 36.0 35.0 37.0 32.0 37.0 7 34.81834603692118 35.0 35.0 37.0 32.0 37.0 8 34.879182703262586 35.0 35.0 37.0 32.0 37.0 9 36.354016138453474 38.0 35.0 39.0 32.0 39.0 10 36.15815311393549 38.0 35.0 39.0 31.0 39.0 11 36.25358557967311 38.0 35.0 39.0 32.0 39.0 12 36.00315898076852 38.0 35.0 39.0 30.0 39.0 13 36.08930209149016 38.0 35.0 39.0 31.0 39.0 14 36.90275193797402 39.0 36.0 40.0 31.0 41.0 15 37.03363353606636 39.0 36.0 40.0 31.0 41.0 16 37.00258675844569 38.0 36.0 40.0 31.0 41.0 17 37.07528656391172 39.0 36.0 40.0 31.0 41.0 18 37.082382174774594 39.0 36.0 40.0 31.0 41.0 19 37.166924576664954 39.0 36.0 40.0 31.0 41.0 20 37.14357022941061 39.0 36.0 40.0 31.0 41.0 21 37.07241572154478 39.0 36.0 40.0 31.0 41.0 22 36.99181562602122 39.0 36.0 40.0 31.0 41.0 23 36.87510389605826 39.0 35.0 40.0 31.0 41.0 24 36.78963680235571 39.0 35.0 40.0 30.0 41.0 25 36.66204690168777 38.0 35.0 40.0 30.0 41.0 26 36.415030931630376 38.0 35.0 40.0 30.0 41.0 27 36.28759104673437 38.0 35.0 40.0 30.0 41.0 28 36.11894412682847 38.0 35.0 40.0 30.0 41.0 29 35.90073199587741 38.0 34.0 40.0 29.0 41.0 30 35.68086996173381 38.0 34.0 40.0 28.0 41.0 31 35.44260031662788 38.0 34.0 40.0 27.0 41.0 32 35.33428352332178 38.0 34.0 40.0 27.0 41.0 33 35.15450975791779 38.0 33.0 40.0 27.0 41.0 34 35.31180305172625 38.0 34.0 40.0 27.0 41.0 35 35.22194955091224 38.0 34.0 40.0 26.0 41.0 36 35.170153294495016 38.0 33.0 40.0 26.0 41.0 37 35.05484928009999 38.0 33.0 40.0 25.0 41.0 38 35.01202748072703 38.0 33.0 40.0 25.0 41.0 39 34.91054086497202 38.0 33.0 40.0 25.0 41.0 40 34.71053091798029 38.0 33.0 40.0 24.0 41.0 41 34.590002300241835 38.0 33.0 40.0 24.0 41.0 42 34.41752876180766 38.0 33.0 40.0 23.0 41.0 43 34.0524679486573 37.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 0.0 13 3.0 14 3.0 15 14.0 16 46.0 17 118.0 18 292.0 19 734.0 20 1474.0 21 3060.0 22 5606.0 23 10050.0 24 16337.0 25 25875.0 26 38606.0 27 55252.0 28 76971.0 29 102013.0 30 129826.0 31 157798.0 32 191187.0 33 229409.0 34 274699.0 35 325346.0 36 398445.0 37 501355.0 38 601925.0 39 553165.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.7232003580917 22.100485699712756 14.042124969354886 23.134188972840658 2 18.39360949029506 23.501227561492275 35.8567698063391 22.248393141873564 3 19.58838375169714 25.06950055019298 33.34034307931294 22.00177261879695 4 13.183277917597284 16.16153698321256 36.831791234267605 33.82339386492256 5 12.211040566156822 38.35851931459821 35.77073373389797 13.659706385347 6 31.916896127728023 37.12968741848805 13.617350580912428 17.336065872871497 7 25.094800507404695 33.799094012857026 21.869974978450436 19.23613050128784 8 26.50140785071728 34.179647535916615 19.49369812123491 19.8252464921312 9 23.85164278082209 14.443059013501689 23.02585325862638 38.67944494704984 10 15.93551322017369 27.195615971517007 34.667942116076524 22.200928692232775 11 32.20406145402854 22.291586872241435 24.72249109433397 20.78186057939605 12 21.29923929840191 26.82344170779036 31.380326201862847 20.496992791944884 13 31.58980768518636 20.862328498861096 27.52189351799419 20.025970297958352 14 20.390846497104693 22.881702968230986 28.436016651480383 28.291433883183934 15 21.848080784709527 29.464638309270896 26.62052848258912 22.066752423430465 16 21.57964715749845 28.574598788899696 27.444588093180606 22.401165960421242 17 21.165441447763023 26.47272915990357 27.389041712763856 24.972787679569556 18 22.982254080226273 25.119505807502463 30.87846262755733 21.019777484713934 19 22.141084562674294 24.159431897029172 32.00125634830256 21.69822719199397 20 23.516337258160387 23.654351768334564 32.111646332546854 20.717664640958198 21 22.55650661650644 24.59007176700469 32.4926323335075 20.360789282981372 22 20.52402266076082 25.083123604076214 32.00941936868497 22.38343436647799 23 22.114081723727168 25.32339210798108 33.16751409810383 19.39501207018792 24 21.854459833750088 25.072284626681025 30.387356941040554 22.685898598528333 25 21.76482878875644 25.671239489773384 31.506339450282745 21.05759227118743 26 21.496908729052866 26.409100848710853 31.354377527799542 20.73961289443674 27 19.896740495149352 26.701347790348766 31.148220718340387 22.253690996161488 28 20.938795997741384 25.89218163747486 31.17919694800345 21.989825416780302 29 21.09040653192998 25.899209403367003 30.14789933320017 22.862484731502853 30 21.23331344835984 26.25192216154617 32.14924488006982 20.365519510024164 31 22.459388297850776 25.751923648188956 31.839185254882203 19.949502799078065 32 21.70168701520241 25.755113172709237 30.376058455875498 22.167141356212856 33 21.30351001767483 25.954350335751514 31.225661292498046 21.516478354075605 34 20.378818205481604 26.889070229275458 31.849024127131205 20.883087438111737 35 19.851519524620294 29.57432551692597 30.188714435112228 20.385440523341508 36 22.52682782054654 26.783815920106196 29.93314702545754 20.756209233889724 37 21.57534940835672 27.78492117144208 29.85430089812145 20.785428522079755 38 21.44503841079508 26.030060998304954 31.13032694518424 21.394573645715724 39 21.043671888747223 25.58563589523331 31.860917269410216 21.50977494660925 40 19.356386387649945 26.602526589957705 31.33956515968841 22.701521862703945 41 21.66281806384509 25.416537035920804 31.232689058390196 21.687955841843912 42 19.72885797993357 28.060436624282932 30.610515537984938 21.60018985779856 43 20.286808532032154 28.11163119582032 29.309919340168467 22.291640931979064 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 210.0 1 321.0 2 432.0 3 1357.0 4 2282.0 5 2282.0 6 3777.0 7 5272.0 8 5934.0 9 6596.0 10 10196.0 11 13796.0 12 13796.0 13 26484.0 14 39172.0 15 65408.5 16 91645.0 17 89414.0 18 87183.0 19 87183.0 20 92792.5 21 98402.0 22 80577.5 23 62753.0 24 69654.5 25 76556.0 26 76556.0 27 83234.0 28 89912.0 29 95045.0 30 100178.0 31 108222.5 32 116267.0 33 116267.0 34 128140.0 35 140013.0 36 153048.5 37 166084.0 38 173390.5 39 180697.0 40 180697.0 41 187476.5 42 194256.0 43 201473.5 44 208691.0 45 223413.5 46 238136.0 47 238136.0 48 326139.0 49 414142.0 50 385354.5 51 356567.0 52 321349.5 53 286132.0 54 286132.0 55 247805.5 56 209479.0 57 173557.0 58 137635.0 59 122590.5 60 107546.0 61 107546.0 62 96661.5 63 85777.0 64 74152.5 65 62528.0 66 52853.5 67 43179.0 68 43179.0 69 36480.5 70 29782.0 71 25046.5 72 20311.0 73 16526.5 74 12742.0 75 12742.0 76 10024.5 77 7307.0 78 5547.5 79 3788.0 80 2898.0 81 2008.0 82 2008.0 83 1565.0 84 1122.0 85 821.5 86 521.0 87 405.5 88 290.0 89 290.0 90 227.5 91 165.0 92 99.0 93 33.0 94 26.0 95 19.0 96 19.0 97 10.5 98 2.0 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3699611.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.01473704654053 #Duplication Level Percentage of deduplicated Percentage of total 1 71.05185640191972 27.010176377875357 2 14.23063931529117 10.819480231499108 3 5.724774583479826 6.528774013251125 4 2.8291959771275628 4.302045644945384 5 1.6565162745978084 3.14860152960753 6 1.0016291128706616 2.284600040636272 7 0.6520854219884322 1.7352199094140868 8 0.45016829763283317 1.3690423568960757 9 0.33332085485161617 1.140399418438106 >10 1.7560547169226757 12.563566329923331 >50 0.17081986888136444 4.53011857203262 >100 0.12525804966941437 9.05520734661155 >500 0.00995010665079618 2.5116934168043086 >1k 0.006299348094630525 5.211641384063515 >5k 7.158350107534687E-4 1.7399803764575925 >10k+ 7.158350107534687E-4 6.049453051544104 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 45070 1.218236187534311 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 43813 1.1842596424326775 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 38805 1.0488940594024614 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 16113 0.4355322762312037 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15302 0.4136110526214783 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 14559 0.39352786009123664 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 12879 0.3481176804804613 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 12266 0.3315483708962915 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 11945 0.32287178300637553 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 11554 0.31230310429934394 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 8944 0.24175514668974657 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 7290 0.19704774366818564 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7135 0.19285811400171532 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6699 0.1810730911979665 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6193 0.167395977577102 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5943 0.1606385103731176 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 5497 0.1485831888812094 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 5453 0.14739387465330814 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 5439 0.147015456489885 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5348 0.1445557384276347 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4926 0.133149133787309 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 4806 0.12990554952939645 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 4389 0.11863409423315047 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4378 0.11833676567617514 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3721 0.1005781418641041 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3717 0.10047002238884034 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.7029868815937676E-5 0.0 3 0.0 0.0 0.0 2.7029868815937676E-5 0.0 4 0.0 0.0 0.0 2.7029868815937676E-5 0.0 5 0.0 0.0 0.0 2.7029868815937676E-5 0.0 6 0.0 0.0 0.0 2.7029868815937676E-5 0.0 7 5.405973763187535E-5 0.0 0.0 2.7029868815937676E-5 0.0 8 1.081194752637507E-4 0.0 0.0 2.7029868815937676E-5 0.0 9 1.081194752637507E-4 0.0 0.0 5.405973763187535E-5 0.0 10 1.3514934407968837E-4 0.0 0.0 8.108960644781302E-5 0.0 11 1.3514934407968837E-4 0.0 0.0 1.6217921289562605E-4 0.0 12 1.6217921289562605E-4 0.0 0.0 1.8920908171156373E-4 0.0 13 1.6217921289562605E-4 0.0 0.0 2.7029868815937674E-4 0.0 14 1.8920908171156373E-4 0.0 0.0 3.243584257912521E-4 0.0 15 1.8920908171156373E-4 0.0 0.0 5.946571139506288E-4 0.0 16 1.8920908171156373E-4 0.0 0.0 0.0010271350150056317 0.0 17 2.162389505275014E-4 0.0 0.0 0.0014596129160606346 0.0 18 2.162389505275014E-4 0.0 0.0 0.0018110012106678243 0.0 19 2.162389505275014E-4 0.0 0.0 0.0025948674063300168 0.0 20 2.162389505275014E-4 0.0 0.0 0.0038923011094950254 0.0 21 2.162389505275014E-4 0.0 0.0 0.006649347728720668 0.0 22 3.243584257912521E-4 0.0 0.0 0.010866007264006945 0.0 23 3.243584257912521E-4 0.0 0.0 0.013974442177839778 0.0 24 3.513882946071898E-4 0.0 0.0 0.01789377315615074 0.0 25 3.513882946071898E-4 0.0 0.0 0.021137357414063262 0.0 26 3.513882946071898E-4 0.0 0.0 0.027651555798704243 0.0 27 3.513882946071898E-4 0.0 0.0 0.07246707829552891 0.0 28 3.513882946071898E-4 0.0 0.0 0.13468983630981743 0.0 29 3.513882946071898E-4 0.0 0.0 0.21104921571484136 0.0 30 4.324779010550028E-4 0.0 0.0 0.3430090352742491 0.0 31 4.324779010550028E-4 0.0 0.0 0.5107564011459583 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10935 0.0 30.23274 1 GTATTGG 1325 0.0 23.177359 1 ATTGGAC 1505 0.0 20.405317 3 ACGTTTA 165 0.0 19.060606 26 TTGGACC 2230 0.0 18.748878 4 CGAATTA 235 0.0 18.106382 15 TATACCG 250 0.0 17.76 5 TGGACCC 2340 0.0 17.551283 5 GTATCAA 18955 0.0 17.460566 2 GGACCCT 2250 0.0 17.43111 6 TACCCCG 350 0.0 16.914286 5 GATACCT 1375 0.0 16.01091 36 TATTGGA 1900 0.0 15.968421 2 GACCCTC 2440 0.0 15.467213 7 TTGATAC 3595 0.0 15.283728 34 ACCCCGC 335 0.0 14.910448 6 GTATTAG 665 0.0 14.74436 1 GATACTG 1105 0.0 14.73303 36 TCACGTT 245 0.0 14.346938 24 TGATACC 2710 0.0 14.199263 35 >>END_MODULE