##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088324_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3023679 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.909238381455175 31.0 31.0 33.0 28.0 34.0 2 31.223640472417873 31.0 31.0 34.0 28.0 34.0 3 31.284564929015282 31.0 31.0 34.0 28.0 34.0 4 35.1795094651251 35.0 35.0 37.0 33.0 37.0 5 34.908901374782175 35.0 35.0 37.0 32.0 37.0 6 34.98912781416281 36.0 35.0 37.0 32.0 37.0 7 34.807934638564475 35.0 35.0 37.0 32.0 37.0 8 34.87361489099868 35.0 35.0 37.0 32.0 37.0 9 36.33930222090374 38.0 35.0 39.0 32.0 39.0 10 36.12743085492871 38.0 35.0 39.0 31.0 39.0 11 36.24298544918293 38.0 35.0 39.0 32.0 39.0 12 35.99094414453386 38.0 35.0 39.0 30.0 39.0 13 36.089953993132205 38.0 35.0 39.0 31.0 39.0 14 36.85939711192888 38.0 36.0 40.0 31.0 41.0 15 36.99668913267579 38.0 36.0 40.0 31.0 41.0 16 36.97359640358649 38.0 36.0 40.0 31.0 41.0 17 37.07373997041353 39.0 36.0 40.0 31.0 41.0 18 37.075418720042705 39.0 36.0 40.0 31.0 41.0 19 37.16575403672149 39.0 36.0 40.0 31.0 41.0 20 37.159943565438 39.0 36.0 40.0 31.0 41.0 21 37.0781994384986 39.0 36.0 40.0 31.0 41.0 22 37.00038562294476 39.0 36.0 40.0 31.0 41.0 23 36.89454072340351 39.0 35.0 40.0 31.0 41.0 24 36.80298371619474 39.0 35.0 40.0 30.0 41.0 25 36.684979457144756 38.0 35.0 40.0 30.0 41.0 26 36.44256979659547 38.0 35.0 40.0 30.0 41.0 27 36.30933442339614 38.0 35.0 40.0 30.0 41.0 28 36.134093599221345 38.0 35.0 40.0 30.0 41.0 29 35.91291337473323 38.0 34.0 40.0 29.0 41.0 30 35.68151645726944 38.0 34.0 40.0 28.0 41.0 31 35.432022711405544 38.0 34.0 40.0 27.0 41.0 32 35.31581626224212 38.0 34.0 40.0 27.0 41.0 33 35.13049599511059 37.0 33.0 40.0 27.0 41.0 34 35.261427221606525 38.0 34.0 40.0 27.0 41.0 35 35.17888572166556 38.0 34.0 40.0 26.0 41.0 36 35.092653353745554 38.0 33.0 40.0 26.0 41.0 37 34.96827077212892 38.0 33.0 40.0 25.0 41.0 38 34.90774814390019 38.0 33.0 40.0 25.0 41.0 39 34.79088884765876 38.0 33.0 40.0 24.0 41.0 40 34.58532999038589 38.0 33.0 40.0 24.0 41.0 41 34.439916737193336 38.0 33.0 40.0 23.0 41.0 42 34.262484542836724 38.0 33.0 40.0 22.0 41.0 43 33.885661143262894 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 2.0 13 0.0 14 5.0 15 6.0 16 41.0 17 121.0 18 228.0 19 630.0 20 1364.0 21 2562.0 22 4585.0 23 7994.0 24 13153.0 25 20763.0 26 31807.0 27 45233.0 28 63170.0 29 83963.0 30 107849.0 31 130247.0 32 158608.0 33 190091.0 34 227466.0 35 270847.0 36 327279.0 37 411284.0 38 481286.0 39 443094.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.39403653628577 22.484959547623937 14.498066759070655 22.622937157019642 2 18.26106541071324 23.95221185846778 35.89868501252944 21.888037718289542 3 19.637071263186336 25.155018108734428 33.69163856348508 21.51627206459416 4 13.25587140698467 16.316513756916656 36.69331301371607 33.7343018223826 5 11.772413672218512 38.78232444647729 35.75627571577539 13.688986165528814 6 31.365300350996257 37.462276914976755 13.64165971321691 17.53076302081008 7 24.265637986042833 34.45001933075568 21.94178019558293 19.342562487618558 8 26.28807489154768 34.51169915854163 19.6356160822627 19.564609867647988 9 23.739887732791743 14.520721280268175 23.38551810559256 38.35387288134752 10 15.73457367663697 27.642286102459952 34.68016942274627 21.942970798156818 11 31.749699620892297 22.456815025669062 25.018859475493265 20.774625877945375 12 20.886311013834472 27.228849358678612 31.771725768509157 20.113113858977755 13 31.531620916109148 21.26313672846886 27.854047999142768 19.351194356279223 14 19.896887202642873 23.434597389471566 28.983532974234365 27.68498243365119 15 21.299086311741426 29.93274087626365 27.215521224309857 21.55265158768507 16 20.775915697400418 29.043823765684124 28.034391216792525 22.145869320122934 17 20.67276321329083 26.843358703089848 27.941259637679792 24.54261844593953 18 22.627831856490058 25.285157584518725 31.443284819585678 20.64372573940554 19 21.631595152792343 24.51778115335656 32.87376073981398 20.976862954037117 20 23.06140962714627 23.905183056799352 32.93167032611597 20.101736989938416 21 21.880927175139952 24.82442746071921 33.50941022509334 19.785235139047497 22 19.888222261688494 25.241138361578724 32.992192623621754 21.878446753111028 23 21.37836059978589 25.626695161754938 34.067009097195836 18.92793514126334 24 21.21753003543035 25.300933068622694 31.4118330682589 22.06970382768806 25 20.92573318794753 26.211942471406523 32.35736994568537 20.504954394960574 26 20.674648334032813 26.916779195146045 32.19257070608355 20.216001764737594 27 19.15904432977178 27.136478442321422 31.986133448689497 21.718343779217307 28 20.20604700432817 26.260525670879748 31.924982777603045 21.608444547189038 29 20.218118391535608 26.235688378296768 31.083623625391454 22.46256960477617 30 20.58386488777413 26.56313715840868 33.078114442703736 19.774883511113448 31 21.80459632123648 26.039172809018417 32.67959330338968 19.47663756635542 32 21.134816228839107 26.22133500282272 31.184064181416083 21.45978458692209 33 20.719229785966036 26.061397390397588 31.994467666706683 21.224905156929687 34 19.544336551598235 27.13932265958126 32.88361628334225 20.432724505478262 35 19.166221017508803 29.64527649925802 31.218161716240385 19.97034076699279 36 21.89468524932706 26.74004085751166 30.86941437897343 20.49585951418785 37 21.016748140262244 27.866714687637145 30.59627030514813 20.52026686695248 38 20.81497407628257 25.91320044224271 32.07182376171544 21.200001719759275 39 20.318691236735116 25.605098953956425 32.90603929848373 21.170170510824725 40 18.66067793572003 26.385274362787847 32.43558592033083 22.518461781161296 41 20.866004625491 25.35090530443212 32.25623487149264 21.52685519858424 42 19.205742408503017 27.91037011534624 31.556788931629313 21.327098544521427 43 19.63766656447328 28.123950988183598 30.175094644636552 22.063287802706572 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 221.0 1 342.0 2 463.0 3 1259.5 4 2056.0 5 2056.0 6 3561.5 7 5067.0 8 5748.0 9 6429.0 10 9876.0 11 13323.0 12 13323.0 13 25279.0 14 37235.0 15 61436.5 16 85638.0 17 82886.5 18 80135.0 19 80135.0 20 85539.0 21 90943.0 22 74583.0 23 58223.0 24 63683.5 25 69144.0 26 69144.0 27 74360.5 28 79577.0 29 82713.5 30 85850.0 31 91863.0 32 97876.0 33 97876.0 34 106253.0 35 114630.0 36 124501.5 37 134373.0 38 140113.5 39 145854.0 40 145854.0 41 150445.0 42 155036.0 43 161455.5 44 167875.0 45 184008.0 46 200141.0 47 200141.0 48 276729.0 49 353317.0 50 320879.5 51 288442.0 52 257193.5 53 225945.0 54 225945.0 55 192969.5 56 159994.0 57 131741.5 58 103489.0 59 90925.5 60 78362.0 61 78362.0 62 68020.5 63 57679.0 64 50043.5 65 42408.0 66 36168.5 67 29929.0 68 29929.0 69 25053.0 70 20177.0 71 17267.5 72 14358.0 73 11698.5 74 9039.0 75 9039.0 76 7026.0 77 5013.0 78 3791.0 79 2569.0 80 2006.0 81 1443.0 82 1443.0 83 1051.5 84 660.0 85 534.0 86 408.0 87 301.5 88 195.0 89 195.0 90 158.0 91 121.0 92 75.0 93 29.0 94 19.0 95 9.0 96 9.0 97 6.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3023679.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.17453954420041 #Duplication Level Percentage of deduplicated Percentage of total 1 72.32881579995522 28.334480547405335 2 14.022874565960219 10.986793084151413 3 5.40257570918169 6.349302472796241 4 2.6015025347074614 4.076506556809402 5 1.4429465176332257 2.8263382707594538 6 0.888735317144977 2.088947809549403 7 0.5780519602467701 1.5851443562702758 8 0.39470161836518125 1.2369803325445354 9 0.29886803226335146 1.0537215793558223 >10 1.73256770214648 12.839981963501279 >50 0.1763664630044312 4.7964497763618885 >100 0.11580072780418668 8.340004890994885 >500 0.008011299206117043 2.069000021212628 >1k 0.0068181269839246135 5.685292877391905 >5k 5.11359523794346E-4 1.1948583630646537 >10k+ 8.522658729905767E-4 6.536197097830761 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 40319 1.3334418104567318 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 40157 1.3280840988742522 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 34413 1.1381168437522633 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13734 0.45421488193687226 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11881 0.39293192167554825 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11700 0.38694583651240755 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 11237 0.3716333645205063 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 11101 0.3671355325747211 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 10839 0.3584705916203407 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 10389 0.3435880594467865 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6862 0.22694207949984108 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6582 0.2176818372585185 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6129 0.20270008820380733 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5896 0.1949942437672782 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5239 0.17326574679388917 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5080 0.1680072520925667 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4961 0.1640716491400046 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4341 0.1435668270342189 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4095 0.13543104277934265 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4074 0.13473652461124347 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4073 0.13470345231752445 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3817 0.1262369451254581 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3778 0.12494712567041673 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3719 0.12299586034099519 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3617 0.11962248638165626 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3336 0.11032917184661467 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 3.3072293719009195E-5 0.0 0.0 0.0 0.0 4 3.3072293719009195E-5 0.0 0.0 0.0 0.0 5 6.614458743801839E-5 0.0 0.0 0.0 0.0 6 9.921688115702759E-5 0.0 0.0 0.0 0.0 7 9.921688115702759E-5 0.0 0.0 0.0 0.0 8 1.3228917487603678E-4 0.0 0.0 0.0 0.0 9 1.3228917487603678E-4 0.0 0.0 0.0 0.0 10 1.3228917487603678E-4 0.0 0.0 6.614458743801839E-5 0.0 11 1.3228917487603678E-4 0.0 0.0 2.3150605603306437E-4 0.0 12 1.3228917487603678E-4 0.0 0.0 5.291566995041471E-4 0.0 13 1.3228917487603678E-4 0.0 0.0 6.945181680991931E-4 0.0 14 1.6536146859504598E-4 0.0 0.0 9.92168811570276E-4 0.0 15 1.6536146859504598E-4 0.0 0.0 0.0013228917487603678 0.0 16 1.6536146859504598E-4 0.0 0.0 0.0021496990917355976 0.0 17 1.6536146859504598E-4 0.0 0.0 0.0028111449661157814 0.0 18 1.6536146859504598E-4 0.0 0.0 0.0032741570781819104 0.0 19 1.6536146859504598E-4 0.0 0.0 0.003968675246281104 0.0 20 1.6536146859504598E-4 0.0 0.0 0.006449097275206793 0.0 21 1.6536146859504598E-4 0.0 0.0 0.011972170326281327 0.0 22 1.6536146859504598E-4 0.0 0.0 0.019115785769587314 0.0 23 1.6536146859504598E-4 0.0 0.0 0.024010485240000674 0.0 24 1.6536146859504598E-4 0.0 0.0 0.030889522333554586 0.0 25 1.9843376231405517E-4 0.0 0.0 0.03680946290925723 0.0 26 1.9843376231405517E-4 0.0 0.0 0.046532717262645934 0.0 27 1.9843376231405517E-4 0.0 0.0 0.11704284747157354 0.0 28 1.9843376231405517E-4 0.0 0.0 0.2057758115196752 0.0 29 1.9843376231405517E-4 0.0 0.0 0.3047611866206697 0.0 30 2.3150605603306437E-4 0.0 0.0 0.4740582581682778 0.0 31 2.3150605603306437E-4 0.0 0.0 0.6915416616644823 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9525 0.0 30.571129 1 ATTGGAC 1200 0.0 21.7375 3 GTATTGG 1185 0.0 21.075949 1 TTGGACC 1860 0.0 19.096773 4 GTATCAA 16510 0.0 17.760448 2 GGACCCT 1930 0.0 17.253887 6 ACGTTTA 220 0.0 16.818182 26 GACCCTC 2035 0.0 16.272728 7 CGACGAG 220 0.0 15.977273 24 TGGACCC 2150 0.0 15.660464 5 CGAATTA 180 2.0190782E-10 15.416667 15 CGCCGGA 180 2.0190782E-10 15.416667 14 GATACTG 1010 0.0 15.2029705 36 TATTGGA 1720 0.0 15.058139 2 CTAATAC 430 0.0 15.058139 3 TATACCG 295 0.0 14.423729 5 TGCGGTA 90 8.279516E-4 14.388889 36 TGATACT 1075 0.0 14.28372 35 CGTACAC 80 0.006301754 13.875 3 CCGTATC 95 0.0012458957 13.631579 9 >>END_MODULE