##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088316_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1764642 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.97112275464372 31.0 31.0 33.0 28.0 34.0 2 31.29566336968065 31.0 31.0 34.0 28.0 34.0 3 31.355722577157294 31.0 31.0 34.0 28.0 34.0 4 35.23940833324833 35.0 35.0 37.0 33.0 37.0 5 34.97732967933439 35.0 35.0 37.0 32.0 37.0 6 35.07075599470034 36.0 35.0 37.0 32.0 37.0 7 34.87897828568061 36.0 35.0 37.0 32.0 37.0 8 34.94738706207831 36.0 35.0 37.0 32.0 37.0 9 36.41722230344738 38.0 35.0 39.0 32.0 39.0 10 36.20805239816348 38.0 35.0 39.0 32.0 39.0 11 36.32614207300971 38.0 35.0 39.0 32.0 39.0 12 36.06680165155312 38.0 35.0 39.0 30.0 39.0 13 36.151022700355085 38.0 35.0 39.0 31.0 39.0 14 36.92150079166199 39.0 36.0 40.0 31.0 41.0 15 37.07638319840512 39.0 36.0 40.0 31.0 41.0 16 37.061028242555714 39.0 36.0 40.0 31.0 41.0 17 37.16721975335507 39.0 36.0 40.0 31.0 41.0 18 37.1808083452621 39.0 36.0 40.0 31.0 41.0 19 37.27647364167916 39.0 36.0 40.0 31.0 41.0 20 37.266021663317545 39.0 36.0 40.0 31.0 41.0 21 37.18950189330187 39.0 36.0 40.0 31.0 41.0 22 37.106753097795476 39.0 36.0 40.0 31.0 41.0 23 36.993535799329266 39.0 36.0 40.0 31.0 41.0 24 36.90817570929401 39.0 35.0 40.0 31.0 41.0 25 36.78091703586337 38.0 35.0 40.0 30.0 41.0 26 36.55266223970641 38.0 35.0 40.0 30.0 41.0 27 36.432262181224296 38.0 35.0 40.0 30.0 41.0 28 36.25245630558493 38.0 35.0 40.0 30.0 41.0 29 36.0420748231086 38.0 35.0 40.0 30.0 41.0 30 35.788138330607566 38.0 34.0 40.0 29.0 41.0 31 35.544202166785105 38.0 34.0 40.0 27.0 41.0 32 35.42944517924882 38.0 34.0 40.0 27.0 41.0 33 35.241344136657744 38.0 34.0 40.0 27.0 41.0 34 35.36655310255565 38.0 34.0 40.0 27.0 41.0 35 35.28200054175294 38.0 34.0 40.0 27.0 41.0 36 35.20511582519287 38.0 34.0 40.0 26.0 41.0 37 35.07857571110741 38.0 33.0 40.0 26.0 41.0 38 35.02151654556562 38.0 33.0 40.0 25.0 41.0 39 34.90853215553069 38.0 33.0 40.0 25.0 41.0 40 34.70878059119073 38.0 33.0 40.0 24.0 41.0 41 34.568623550839206 38.0 33.0 40.0 23.0 41.0 42 34.380477173273675 38.0 33.0 40.0 23.0 41.0 43 34.01010743255573 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 5.0 16 16.0 17 46.0 18 138.0 19 300.0 20 665.0 21 1266.0 22 2419.0 23 4172.0 24 7109.0 25 11176.0 26 17173.0 27 25064.0 28 34860.0 29 46994.0 30 60918.0 31 73748.0 32 89683.0 33 109410.0 34 131411.0 35 157154.0 36 192688.0 37 245224.0 38 288542.0 39 264459.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.7354012881933 22.257885735463624 14.555303568655853 22.451409407687226 2 18.479215614271904 23.63448223492357 36.26299272033648 21.623309430468048 3 19.55643127614553 25.12866632438761 33.77670938354635 21.53819301592051 4 13.08968051310124 16.09754273104686 36.858240934988515 33.95453582086338 5 11.630347685252874 38.691530633408924 36.0097402192626 13.668381462075594 6 31.463945661499615 37.30105029802079 13.390704743511714 17.844299296967883 7 24.41486715152422 34.46092748557498 21.731886694298332 19.39231866860247 8 26.17613090927225 34.67910205016088 19.455617626691417 19.689149413875448 9 23.55293594961471 14.555360237373927 23.477736560730165 38.4139672522812 10 15.88815181776247 27.285647740448205 34.50031224463659 22.32588819715274 11 31.722978371817064 22.312854391995657 25.115745856666678 20.848421379520605 12 21.218298102391305 27.1286753913825 31.598703873080204 20.054322633145986 13 31.652935836277273 21.336962398038807 27.811590112895416 19.198511652788497 14 19.977026501692695 23.42384460984154 28.759034410378987 27.840094478086776 15 21.231445244984535 29.704721977602254 27.471237792141405 21.592594985271802 16 20.92067399506529 29.135484704546304 27.769485255366245 22.174356045022165 17 20.715929916662983 26.67730905192101 27.447833611576737 25.158927419839266 18 22.859254171667683 25.25883436980419 31.321310498106698 20.560600960421436 19 21.967968573795705 24.349018101121928 32.50098320225859 21.182030122823782 20 23.341391625043492 23.618955006171223 32.88706717849853 20.152586190286755 21 22.017837045701054 24.745132440461013 33.39311883090168 19.843911682936255 22 19.817900741340168 25.13949004953979 32.716097656068484 22.326511553051553 23 21.399014644330126 25.625707650616953 34.20642827270347 18.76884943234945 24 21.524422517428466 25.317033143266453 30.87204090121396 22.286503438091128 25 21.01406404245167 26.17851099543137 32.18749185387178 20.619933108245185 26 20.79050594964871 27.00921773368196 32.00167512730627 20.198601189363057 27 19.18978467020506 27.13915910422624 31.616497850555525 22.054558375013176 28 20.055456007507473 26.096001341915244 31.92046885430586 21.928073796271423 29 20.43060292115908 26.110395196306108 30.73008576243793 22.72891612009688 30 20.66691147552875 26.345400370160064 33.07390394198937 19.91378421232182 31 22.018857082626393 25.93619555694583 32.6689492826307 19.37599807779708 32 21.14451543145862 26.110621871178402 31.096335687351882 21.648527010011094 33 20.607749333859218 25.980680500634122 32.119999410645335 21.291570754861326 34 19.332929852060644 27.181830648936156 32.977170440236605 20.508069058766594 35 18.990310782583663 29.830583200445187 30.919699293114412 20.25940672385674 36 22.038691133952383 26.831504633801078 30.650806225852044 20.478998006394498 37 21.002843636272967 27.971225891710617 30.469522996732483 20.55640747528394 38 20.755201338288444 25.826824931062504 32.17768816564493 21.24028556500412 39 20.12855865382327 25.48828600928687 32.9947944115577 21.388360925332165 40 18.421810202862677 26.352597297355494 32.46890870782856 22.756683791953268 41 20.858168399029378 25.190435227088553 32.32519683879223 21.62619953508984 42 18.997904390805616 27.99077659944623 31.57773644739273 21.433582562355426 43 19.629137241434808 28.04852202316391 30.183855988920133 22.138484746481154 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 88.0 1 146.5 2 205.0 3 674.5 4 1144.0 5 1144.0 6 1989.0 7 2834.0 8 3204.5 9 3575.0 10 5661.0 11 7747.0 12 7747.0 13 14441.5 14 21136.0 15 35202.5 16 49269.0 17 48333.0 18 47397.0 19 47397.0 20 49637.5 21 51878.0 22 41985.0 23 32092.0 24 34654.5 25 37217.0 26 37217.0 27 40089.0 28 42961.0 29 44555.5 30 46150.0 31 50164.0 32 54178.0 33 54178.0 34 60053.0 35 65928.0 36 71426.0 37 76924.0 38 81694.0 39 86464.0 40 86464.0 41 88966.0 42 91468.0 43 95721.5 44 99975.0 45 109081.0 46 118187.0 47 118187.0 48 168290.0 49 218393.0 50 198368.0 51 178343.0 52 156536.5 53 134730.0 54 134730.0 55 114664.5 56 94599.0 57 76227.0 58 57855.0 59 50626.5 60 43398.0 61 43398.0 62 37496.0 63 31594.0 64 27607.0 65 23620.0 66 19834.5 67 16049.0 68 16049.0 69 13691.5 70 11334.0 71 9382.5 72 7431.0 73 6029.5 74 4628.0 75 4628.0 76 3719.5 77 2811.0 78 2140.0 79 1469.0 80 1159.0 81 849.0 82 849.0 83 604.0 84 359.0 85 274.5 86 190.0 87 143.0 88 96.0 89 96.0 90 76.0 91 56.0 92 34.5 93 13.0 94 9.5 95 6.0 96 6.0 97 4.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1764642.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.58990692386104 #Duplication Level Percentage of deduplicated Percentage of total 1 78.16010633235567 35.633119728511765 2 12.347459494287188 11.258390581813945 3 4.00649122880224 5.479666866370793 4 1.6678758789627368 3.041532243298564 5 0.8815800201858612 2.0095575533104473 6 0.5440238954134894 1.4881199253754378 7 0.3696992975059871 1.1798189594180335 8 0.26522037427158385 0.9673097741882477 9 0.20669112507475962 0.848072623873177 >10 1.3132189361264532 11.546167715575194 >50 0.1375431879014611 4.3581106242212915 >100 0.08604265682403917 7.452981430236735 >500 0.005518689113351407 1.7969709846382187 >1k 0.007274635649417762 6.1865297769356 >5k 8.779732680331783E-4 2.905939840874253 >10k+ 3.76274257728505E-4 3.8477113713582938 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 23502 1.3318282121812808 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 22995 1.3030971721176308 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 20793 1.178312654918108 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7671 0.43470573634765575 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7656 0.4338557055765419 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7415 0.420198544520645 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7172 0.4064280460285996 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7095 0.4020645547368815 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6937 0.39311089728114823 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6874 0.3895407680424698 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4384 0.24843566003756004 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4084 0.23143504461528175 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3897 0.22083799433539494 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3635 0.2059907901999386 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3430 0.19437370299471507 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3295 0.18672342605468983 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2860 0.16207253369238633 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2852 0.16161918394779223 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2631 0.14909539725338058 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2609 0.14784868545574684 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2540 0.14393854390862282 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2469 0.1399150649253503 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2443 0.1384416782554195 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2311 0.13096140746961707 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 2262 0.12818464028397827 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 1951 0.11056066896288314 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1938 0.10982397562791774 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1917 0.10863393254835825 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 1912 0.10835058895798694 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 1888 0.10699053972420469 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCCT 1873 0.10614050895309077 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 1857 0.1052338094639026 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 1821 0.1031937356132292 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 1809 0.10251371099633806 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 1803 0.1021736986878925 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.6668718074260955E-5 0.0 5 0.0 0.0 0.0 5.6668718074260955E-5 0.0 6 5.6668718074260955E-5 0.0 0.0 5.6668718074260955E-5 0.0 7 5.6668718074260955E-5 0.0 0.0 5.6668718074260955E-5 5.6668718074260955E-5 8 1.7000615422278287E-4 0.0 0.0 5.6668718074260955E-5 5.6668718074260955E-5 9 1.7000615422278287E-4 0.0 0.0 1.1333743614852191E-4 5.6668718074260955E-5 10 1.7000615422278287E-4 0.0 0.0 1.1333743614852191E-4 5.6668718074260955E-5 11 1.7000615422278287E-4 0.0 0.0 6.233558988168705E-4 5.6668718074260955E-5 12 1.7000615422278287E-4 0.0 0.0 0.001076705643410958 5.6668718074260955E-5 13 1.7000615422278287E-4 0.0 0.0 0.001246711797633741 5.6668718074260955E-5 14 1.7000615422278287E-4 0.0 0.0 0.0015867241060793067 5.6668718074260955E-5 15 1.7000615422278287E-4 0.0 0.0 0.0020967425687476553 5.6668718074260955E-5 16 1.7000615422278287E-4 0.0 0.0 0.0029467733398615696 5.6668718074260955E-5 17 1.7000615422278287E-4 0.0 0.0 0.003910141547124006 5.6668718074260955E-5 18 1.7000615422278287E-4 0.0 0.0 0.004533497445940876 5.6668718074260955E-5 19 1.7000615422278287E-4 0.0 0.0 0.006290227706242966 5.6668718074260955E-5 20 1.7000615422278287E-4 0.0 0.0 0.010540381561812537 5.6668718074260955E-5 21 1.7000615422278287E-4 0.0 0.0 0.018644008246431854 5.6668718074260955E-5 22 1.7000615422278287E-4 0.0 0.0 0.03088445135047222 5.6668718074260955E-5 23 1.7000615422278287E-4 0.0 0.0 0.038251384700126144 5.6668718074260955E-5 24 1.7000615422278287E-4 0.0 0.0 0.04720504215585938 5.6668718074260955E-5 25 1.7000615422278287E-4 0.0 0.0 0.05270190780906269 5.6668718074260955E-5 26 1.7000615422278287E-4 0.0 0.0 0.06324228937087523 5.6668718074260955E-5 27 1.7000615422278287E-4 0.0 0.0 0.15124880854020248 5.6668718074260955E-5 28 1.7000615422278287E-4 0.0 0.0 0.2552925749245456 5.6668718074260955E-5 29 1.7000615422278287E-4 0.0 0.0 0.37554359467812737 1.1333743614852191E-4 30 1.7000615422278287E-4 0.0 0.0 0.5769442187140508 1.1333743614852191E-4 31 1.7000615422278287E-4 0.0 0.0 0.8434005310992257 1.1333743614852191E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5630 0.0 30.230906 1 GTATTGG 720 0.0 22.61111 1 ATTGGAC 820 0.0 19.402437 3 TTGGACC 1250 0.0 18.648 4 TGCGGTA 50 0.007036339 18.499998 36 GGACCCT 1275 0.0 17.701962 6 TGGACCC 1320 0.0 17.51894 5 GTATCAA 10175 0.0 16.818182 2 TCACGTA 245 0.0 16.612246 25 ACGTTTA 125 1.659082E-7 16.279999 26 TATTGGA 955 0.0 16.272253 2 GATACCT 785 0.0 16.261147 36 ATAGTCG 80 3.3838488E-4 16.1875 30 TAAGCCG 115 1.243041E-6 16.086956 36 GACCCTC 1400 0.0 15.460714 7 TCGTTTG 180 2.0190782E-10 15.416666 12 CGATTAA 180 2.0190782E-10 15.416666 24 ATACCCT 675 0.0 15.074074 37 ATCCGTA 75 0.0041055633 14.8 12 TACGACT 75 0.0041055633 14.8 4 >>END_MODULE