##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088310_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1552222 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.926289538480965 31.0 31.0 33.0 28.0 34.0 2 31.24707355004632 31.0 31.0 34.0 28.0 34.0 3 31.30542216255149 31.0 31.0 34.0 28.0 34.0 4 35.19816559744676 35.0 35.0 37.0 33.0 37.0 5 34.96264194168102 35.0 35.0 37.0 32.0 37.0 6 35.014250538904875 36.0 35.0 37.0 32.0 37.0 7 34.82384929475294 35.0 35.0 37.0 32.0 37.0 8 34.89401000630065 36.0 35.0 37.0 32.0 37.0 9 36.35548201223794 38.0 35.0 39.0 32.0 39.0 10 36.16342894250951 38.0 35.0 39.0 31.0 39.0 11 36.269251434395336 38.0 35.0 39.0 32.0 39.0 12 36.02376335343784 38.0 35.0 39.0 30.0 39.0 13 36.09631483125481 38.0 35.0 39.0 31.0 39.0 14 36.88767135113405 39.0 36.0 40.0 31.0 41.0 15 37.02089713971326 38.0 36.0 40.0 31.0 41.0 16 36.980311450295126 38.0 36.0 40.0 31.0 41.0 17 37.08168676903175 39.0 36.0 40.0 31.0 41.0 18 37.098650837315795 39.0 36.0 40.0 31.0 41.0 19 37.20297096678181 39.0 36.0 40.0 31.0 41.0 20 37.19228757226737 39.0 36.0 40.0 31.0 41.0 21 37.110678756002685 39.0 36.0 40.0 31.0 41.0 22 37.03821682723219 39.0 36.0 40.0 31.0 41.0 23 36.913353888812296 39.0 35.0 40.0 31.0 41.0 24 36.824990239798176 39.0 35.0 40.0 30.0 41.0 25 36.69266316287232 38.0 35.0 40.0 30.0 41.0 26 36.45224265601183 38.0 35.0 40.0 30.0 41.0 27 36.324185586855485 38.0 35.0 40.0 30.0 41.0 28 36.15235578415974 38.0 35.0 40.0 30.0 41.0 29 35.933306575992354 38.0 34.0 40.0 29.0 41.0 30 35.696589147686346 38.0 34.0 40.0 28.0 41.0 31 35.42532318186445 38.0 34.0 40.0 27.0 41.0 32 35.30101493214244 37.0 34.0 40.0 27.0 41.0 33 35.11147567809244 37.0 33.0 40.0 27.0 41.0 34 35.2400197909835 38.0 34.0 40.0 27.0 41.0 35 35.142457071217905 38.0 33.0 40.0 26.0 41.0 36 35.07337545789198 38.0 33.0 40.0 26.0 41.0 37 34.936631486990905 38.0 33.0 40.0 25.0 41.0 38 34.889484236146636 38.0 33.0 40.0 25.0 41.0 39 34.75943776083576 38.0 33.0 40.0 24.0 41.0 40 34.55071954913666 38.0 33.0 40.0 23.0 41.0 41 34.411487532066936 38.0 33.0 40.0 23.0 41.0 42 34.216758942986246 38.0 33.0 40.0 22.0 41.0 43 33.829834907635636 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 5.0 15 5.0 16 22.0 17 47.0 18 152.0 19 295.0 20 654.0 21 1300.0 22 2365.0 23 4253.0 24 7007.0 25 10813.0 26 16211.0 27 23432.0 28 32474.0 29 43286.0 30 55173.0 31 66815.0 32 80171.0 33 97152.0 34 115867.0 35 137187.0 36 168073.0 37 212194.0 38 248018.0 39 229250.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.201916993832064 22.67330317441706 14.78976589688846 22.33501393486241 2 18.23057526565143 24.161299092526715 36.08736379203491 21.52076184978695 3 19.454691403678083 25.476123904956893 33.82918165056287 21.24000304080215 4 13.123831513791199 16.58248626807248 36.80845909927832 33.485223118858 5 11.669593653485133 39.02702061947325 35.70159423072215 13.601791496319471 6 31.017921405572142 37.78654084274028 13.62768985364207 17.56784789804551 7 23.81476360984447 34.85899568489559 22.162809185799453 19.163431519460488 8 26.067856273136186 34.69864491032855 19.73841370628686 19.495085110248407 9 23.633861651232877 14.63205649707323 23.589344823098756 38.14473702859514 10 15.736344414652029 27.81728386790034 34.48862340567264 21.957748311774992 11 31.527642308896535 22.72658163587425 25.085007170366097 20.660768884863117 12 20.855586378752523 27.58845062110961 31.843963041369083 19.711999958768782 13 31.38752059950188 21.6298957236787 27.94864394397193 19.033939732847493 14 19.693123792859527 23.73159251704975 29.276482358837846 27.298801331252875 15 21.03629506604081 30.14034075022774 27.48949570357848 21.33386848015297 16 20.568578463647597 29.24040504515462 28.22850082011465 21.96251567108313 17 20.389287099396864 27.09831454521325 27.896589534228994 24.61580882116089 18 22.53047566649616 25.452673651062803 31.671436173433953 20.345414509007085 19 21.56450559262786 24.650275540483253 32.992767787082 20.792451079806884 20 22.821220160518276 24.081478036002583 33.085087055846394 20.012214747632747 21 21.66313839128681 24.999967788112784 33.870026323554235 19.46686749704617 22 19.578578321915295 25.416016523409667 33.17019086187414 21.8352142928009 23 21.17976681170606 25.738457514453472 34.385931909224325 18.695843764616143 24 21.036552761138548 25.526438872790102 31.585688129661865 21.85132023640948 25 20.55195712984354 26.488865639064514 32.63180137892647 20.327375852165478 26 20.476130347334337 27.284628100877324 32.367857175069034 19.87138437671931 27 18.830296181860582 27.34608838168767 32.16910983093913 21.654505605512615 28 19.819780933397414 26.52855068411606 32.17368391892397 21.477984463562557 29 20.06356049585691 26.364721025729565 31.158622928936712 22.413095549476814 30 20.353274209488077 26.702623722637615 33.37344787021444 19.57065419765987 31 21.701921503496276 26.202888504350536 32.958687610406244 19.136502381746944 32 20.814226315565687 26.43668238177271 31.488472654040468 21.260618648621136 33 20.37923699058511 26.34990355760967 32.321600905025186 20.949258546780037 34 19.166008470437863 27.26401249305834 33.344908138140035 20.225070898363764 35 18.63148441395625 29.784979210447993 31.59451418675937 19.98902218883639 36 21.597941531559275 26.877083303805772 31.230455437430987 20.29451972720397 37 20.543968581813683 28.146553779034182 30.98674029874593 20.322737340406206 38 20.43599433586175 26.16642464802071 32.430670355142496 20.966910660975042 39 19.93187830091314 25.701220572830437 33.302324023238945 21.06457710301748 40 18.16621591499154 26.460068211892374 32.874485737220574 22.49923013589551 41 20.488306440702424 25.349015797997964 32.71516574304449 21.44751201825512 42 18.813352729184356 28.012423480661912 31.99162233237256 21.182601457781168 43 19.29640218989294 28.273726309767543 30.54028354191604 21.889587958423473 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 93.0 1 162.0 2 231.0 3 633.0 4 1035.0 5 1035.0 6 1809.0 7 2583.0 8 2991.5 9 3400.0 10 5200.0 11 7000.0 12 7000.0 13 13184.0 14 19368.0 15 32665.0 16 45962.0 17 44833.5 18 43705.0 19 43705.0 20 45487.0 21 47269.0 22 38843.0 23 30417.0 24 33279.5 25 36142.0 26 36142.0 27 38915.5 28 41689.0 29 43021.5 30 44354.0 31 47813.5 32 51273.0 33 51273.0 34 56342.0 35 61411.0 36 66273.5 37 71136.0 38 74105.0 39 77074.0 40 77074.0 41 79219.0 42 81364.0 43 84228.0 44 87092.0 45 95117.5 46 103143.0 47 103143.0 48 144024.0 49 184905.0 50 167392.5 51 149880.0 52 132036.5 53 114193.0 54 114193.0 55 96711.5 56 79230.0 57 64201.0 58 49172.0 59 42817.5 60 36463.0 61 36463.0 62 31731.5 63 27000.0 64 23087.5 65 19175.0 66 16204.5 67 13234.0 68 13234.0 69 11131.5 70 9029.0 71 7412.5 72 5796.0 73 4724.5 74 3653.0 75 3653.0 76 2916.0 77 2179.0 78 1714.5 79 1250.0 80 962.5 81 675.0 82 675.0 83 509.0 84 343.0 85 269.0 86 195.0 87 126.5 88 58.0 89 58.0 90 46.5 91 35.0 92 23.0 93 11.0 94 7.0 95 3.0 96 3.0 97 2.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1552222.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.94676147259519 #Duplication Level Percentage of deduplicated Percentage of total 1 77.36980244405703 36.32261660522958 2 12.823388303284435 12.040331038895232 3 4.162532357275531 5.862522410969212 4 1.8072586564275368 3.3937976425034577 5 0.9808765257422651 2.3024488144045 6 0.5784214721051618 1.6293008928929043 7 0.3885885431555546 1.277008155255496 8 0.27071318542621153 1.016728587495263 9 0.20382068881095178 0.8611849134709024 >10 1.2055431220452284 10.764151360024073 >50 0.12124642646294756 3.9653194388078266 >100 0.07416151629984721 6.486327298627661 >500 0.005513841982840088 1.8663591456786797 >1k 0.006754456428979108 5.463306927756085 >5k 9.649223469970154E-4 2.7722293024474087 >10k+ 4.1353814871300667E-4 3.976367465541833 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 21392 1.3781533826991241 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 21358 1.375962974368357 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 18695 1.204402463049744 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7213 0.464688684994801 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6331 0.40786691594372454 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6263 0.4034860992821903 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5977 0.38506089979397273 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5938 0.382548372591034 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5634 0.3629635451629986 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5482 0.3531711314489809 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3956 0.25486045166219784 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3465 0.22322837841494322 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3243 0.2089263004905226 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3147 0.20274161814482725 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2983 0.1921761191375976 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2749 0.17710095591996505 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2724 0.17549036155910688 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2255 0.1452756113494075 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2249 0.14488906870280155 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2240 0.14430925473289258 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2213 0.14256981282316575 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2013 0.12968505793630036 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2010 0.12949178661299737 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 1918 0.12356479936503928 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1882 0.1212455434854035 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 1794 0.11557625133518272 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 1725 0.11113101089921416 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1697 0.10932714521505299 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 1593 0.10262707267388299 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 1554 0.10011454547094424 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.442377443432705E-5 0.0 2 0.0 0.0 0.0 6.442377443432705E-5 0.0 3 0.0 0.0 0.0 6.442377443432705E-5 0.0 4 0.0 0.0 0.0 6.442377443432705E-5 0.0 5 0.0 0.0 0.0 6.442377443432705E-5 0.0 6 0.0 0.0 0.0 6.442377443432705E-5 0.0 7 0.0 0.0 0.0 6.442377443432705E-5 6.442377443432705E-5 8 0.0 0.0 0.0 6.442377443432705E-5 6.442377443432705E-5 9 0.0 0.0 0.0 6.442377443432705E-5 6.442377443432705E-5 10 0.0 0.0 0.0 2.576950977373082E-4 6.442377443432705E-5 11 0.0 0.0 0.0 5.153901954746164E-4 6.442377443432705E-5 12 0.0 0.0 0.0 0.0010307803909492329 1.9327132330298113E-4 13 6.442377443432705E-5 0.0 0.0 0.0014173230375551951 1.9327132330298113E-4 14 6.442377443432705E-5 0.0 0.0 0.0016750181352925032 1.9327132330298113E-4 15 1.9327132330298113E-4 0.0 0.0 0.0019971370074641386 1.9327132330298113E-4 16 1.9327132330298113E-4 0.0 0.0 0.0030279173984133715 1.9327132330298113E-4 17 1.9327132330298113E-4 0.0 0.0 0.004702935533705875 1.9327132330298113E-4 18 1.9327132330298113E-4 0.0 0.0 0.005798139699089435 1.9327132330298113E-4 19 1.9327132330298113E-4 0.0 0.0 0.007473157834381938 1.9327132330298113E-4 20 1.9327132330298113E-4 0.0 0.0 0.010952041653835598 1.9327132330298113E-4 21 1.9327132330298113E-4 0.0 0.0 0.017780961743874266 1.9327132330298113E-4 22 1.9327132330298113E-4 0.0 0.0 0.026735866390245725 2.576950977373082E-4 23 1.9327132330298113E-4 0.0 0.0 0.03324266760811276 2.576950977373082E-4 24 1.9327132330298113E-4 0.0 0.0 0.041360063186837964 2.576950977373082E-4 25 1.9327132330298113E-4 0.0 0.0 0.04677166023932144 2.576950977373082E-4 26 1.9327132330298113E-4 0.0 0.0 0.056306378855601844 2.576950977373082E-4 27 1.9327132330298113E-4 0.0 0.0 0.13509665498878382 3.2211887217163524E-4 28 1.9327132330298113E-4 0.0 0.0 0.23830354163257575 3.2211887217163524E-4 29 1.9327132330298113E-4 0.0 0.0 0.3547817258098391 3.2211887217163524E-4 30 2.576950977373082E-4 0.0 0.0 0.5633859074281901 3.2211887217163524E-4 31 2.576950977373082E-4 0.0 0.0 0.8445312590595933 3.2211887217163524E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5285 0.0 31.329233 1 GTCGTCA 55 1.9032159E-5 23.545454 24 CGCGATA 60 9.238803E-4 18.5 14 TTGGACC 755 0.0 17.887419 4 ATTGGAC 385 0.0 17.779222 3 GTATCAA 9380 0.0 17.750534 2 ACGTTTA 85 2.724112E-5 17.411764 26 TACGTGC 75 2.0678541E-4 17.266666 8 GTATTGG 375 0.0 16.773333 1 GGACCCT 790 0.0 16.626581 6 CAAACGA 135 2.2208042E-8 16.444445 23 CGAACTA 80 3.3835217E-4 16.1875 24 CTGTGCG 105 9.347243E-6 15.857142 9 TGGACCC 880 0.0 15.767045 5 CTAATAC 235 0.0 15.744681 3 TGCGCGA 95 7.0622205E-5 15.578948 12 ATAGCGG 145 5.3487383E-8 15.310345 37 CGAGTAT 75 0.004105267 14.8 10 TAGGTCG 75 0.004105267 14.8 21 TAGGCTC 100 1.093756E-4 14.8 5 >>END_MODULE