##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088303_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2504717 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.832151895802998 31.0 31.0 33.0 28.0 34.0 2 31.13055606681314 31.0 31.0 34.0 28.0 34.0 3 31.168561158805566 31.0 31.0 34.0 28.0 34.0 4 35.07618465479334 35.0 35.0 37.0 32.0 37.0 5 34.84026818199421 35.0 35.0 37.0 32.0 37.0 6 34.903476520501115 35.0 35.0 37.0 32.0 37.0 7 34.70747713214706 35.0 35.0 37.0 31.0 37.0 8 34.786335142852465 35.0 35.0 37.0 32.0 37.0 9 36.21947908685892 38.0 35.0 39.0 32.0 39.0 10 36.026488022399334 38.0 35.0 39.0 30.0 39.0 11 36.13269842461244 38.0 35.0 39.0 31.0 39.0 12 35.87492598964274 37.0 35.0 39.0 30.0 39.0 13 35.96513218858657 37.0 35.0 39.0 30.0 39.0 14 36.73133571577148 38.0 36.0 40.0 31.0 41.0 15 36.86183429105963 38.0 36.0 40.0 31.0 41.0 16 36.82371820848423 38.0 36.0 40.0 31.0 41.0 17 36.94573997780987 38.0 36.0 40.0 31.0 41.0 18 36.96172621497758 38.0 36.0 40.0 31.0 41.0 19 37.068223276322236 39.0 36.0 40.0 31.0 41.0 20 37.056941762282925 39.0 36.0 40.0 31.0 41.0 21 36.98139909618532 39.0 36.0 40.0 31.0 41.0 22 36.904615172093294 39.0 36.0 40.0 31.0 41.0 23 36.78585205434386 39.0 35.0 40.0 30.0 41.0 24 36.69418261623968 38.0 35.0 40.0 30.0 41.0 25 36.567740786683686 38.0 35.0 40.0 30.0 41.0 26 36.30061879246238 38.0 35.0 40.0 30.0 41.0 27 36.159992925348455 38.0 35.0 40.0 30.0 41.0 28 35.974175525618264 38.0 34.0 40.0 29.0 41.0 29 35.7530830828393 38.0 34.0 40.0 29.0 41.0 30 35.5116861505711 38.0 34.0 40.0 27.0 41.0 31 35.21457434113315 37.0 34.0 40.0 27.0 41.0 32 35.08437400313089 37.0 33.0 40.0 27.0 41.0 33 34.87851960920136 37.0 33.0 40.0 26.0 41.0 34 34.99281236163606 37.0 33.0 40.0 26.0 41.0 35 34.89425671642744 37.0 33.0 40.0 25.0 41.0 36 34.79909905989379 37.0 33.0 40.0 25.0 41.0 37 34.654934270019325 37.0 33.0 40.0 24.0 41.0 38 34.57349193541626 37.0 33.0 40.0 24.0 41.0 39 34.42510071996158 37.0 33.0 40.0 23.0 41.0 40 34.1948363827131 37.0 33.0 40.0 22.0 41.0 41 34.02249076442568 37.0 33.0 40.0 21.0 41.0 42 33.814955142636876 37.0 33.0 40.0 20.0 41.0 43 33.415056072202965 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 6.0 15 10.0 16 37.0 17 119.0 18 280.0 19 612.0 20 1323.0 21 2554.0 22 4584.0 23 7767.0 24 12678.0 25 19616.0 26 29114.0 27 41567.0 28 57052.0 29 75089.0 30 93996.0 31 113600.0 32 135662.0 33 161802.0 34 190557.0 35 223446.0 36 273197.0 37 340571.0 38 391858.0 39 327617.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.89979706290171 23.11414822512883 15.318177662386608 21.66787704958285 2 18.434298166219975 24.73620772326774 35.80184907117251 21.027645039339774 3 19.840524897623165 25.549113931833418 34.097065656519284 20.513295514024136 4 13.3274936849153 16.889652603467777 36.41557110044767 33.367282611169244 5 11.49315471568245 39.51687955166193 35.32482911243066 13.66513662022496 6 30.885445341729223 37.74186864224581 13.342625134895481 18.030060881129483 7 23.5192239282921 35.26482233322168 21.95026424142927 19.265689497056954 8 26.29937833296137 34.76871838215655 19.507752772069658 19.424150512812425 9 23.466643137727736 14.71671250684209 23.926774961003577 37.8898693944266 10 15.901437168350757 28.228378695078128 34.122537596063744 21.747646540507372 11 31.341385074641163 22.878712445358097 25.08363220275983 20.696270277240902 12 20.771408506430067 28.018055532820675 31.99447282866687 19.216063132082386 13 31.724981305273207 21.594096259178183 28.140264948095933 18.540657487452673 14 19.513821321929782 24.058446523100212 29.795302223764203 26.632429931205802 15 20.87752827964197 30.34710108966402 27.878997906749547 20.896372723944463 16 20.143712842608565 29.29508603167543 28.759815979210423 21.801385146505574 17 20.255382144968873 27.187422770716214 28.42868076513235 24.128514319182568 18 22.323240509806098 25.2990257981241 32.20463629224379 20.17309739982601 19 21.478234866453974 24.607051415389446 33.78445548938263 20.13025822877395 20 22.611975724203575 23.890603209863627 33.978289762875406 19.519131303057392 21 21.339336939063376 24.978590395641504 34.71893231850145 18.96314034679367 22 19.104473679062345 25.414048772775526 34.09674625915822 21.38473128900391 23 20.793606623023678 25.7211493354339 35.28797864189846 18.197265399643953 24 20.514692877478772 25.48695122043728 32.44933459548524 21.54902130659871 25 20.300536946888613 26.45085253144367 33.453000877943495 19.79560964372422 26 20.00233958566976 27.28092634816628 33.23876509801307 19.477968968150893 27 18.405552403724652 27.37914103669197 32.98045248225648 21.2348540773269 28 19.307730174706364 26.71243897015112 32.94515907385944 21.034671781283077 29 19.61710644356229 26.236776450193773 31.91087056940964 22.235246536834303 30 19.921452203981527 26.72034405483733 34.21771800965938 19.140485731521764 31 21.333388163213648 26.28245027282523 33.69282837142879 18.69133319253233 32 20.511898150569504 26.522836711692378 32.248273956698505 20.716991181039614 33 19.885879322893565 26.509781344559087 33.091403140554405 20.51293619199295 34 18.719679708326332 27.370557232613507 34.02799597719024 19.881767081869928 35 18.29927293183222 29.93867171420963 32.190742507037726 19.57131284692043 36 21.28036820127783 27.026406576072265 31.74350635221464 19.949718870435262 37 20.228552766639904 28.22490524877661 31.591153810989425 19.955388173594063 38 20.02841039526621 26.143352722083975 33.08824909161394 20.739987791035873 39 19.520049570470434 25.742988129996323 33.88802008370606 20.848942215827176 40 17.837983293122537 26.502075883223537 33.33574212176465 22.324198701889276 41 20.013438643966563 25.532425419718074 33.31581971136859 21.13831622494677 42 18.463642798767285 28.19472219815652 32.39036585769969 20.951269145376504 43 18.857819066984412 28.536996395201538 31.056562477916668 21.548622059897387 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 204.0 1 314.0 2 424.0 3 1117.0 4 1810.0 5 1810.0 6 3266.5 7 4723.0 8 5493.0 9 6263.0 10 9665.0 11 13067.0 12 13067.0 13 24548.5 14 36030.0 15 60340.5 16 84651.0 17 80824.0 18 76997.0 19 76997.0 20 81584.0 21 86171.0 22 69444.5 23 52718.0 24 56309.5 25 59901.0 26 59901.0 27 63428.5 28 66956.0 29 68944.5 30 70933.0 31 76154.5 32 81376.0 33 81376.0 34 88376.0 35 95376.0 36 103263.0 37 111150.0 38 116293.5 39 121437.0 40 121437.0 41 125520.0 42 129603.0 43 133588.5 44 137574.0 45 152223.5 46 166873.0 47 166873.0 48 236882.5 49 306892.0 50 276467.0 51 246042.0 52 213060.0 53 180078.0 54 180078.0 55 150813.5 56 121549.0 57 97254.0 58 72959.0 59 62561.5 60 52164.0 61 52164.0 62 45316.5 63 38469.0 64 33209.5 65 27950.0 66 23428.5 67 18907.0 68 18907.0 69 16032.5 70 13158.0 71 10931.5 72 8705.0 73 7365.0 74 6025.0 75 6025.0 76 4730.5 77 3436.0 78 2706.5 79 1977.0 80 1513.0 81 1049.0 82 1049.0 83 776.0 84 503.0 85 431.0 86 359.0 87 245.0 88 131.0 89 131.0 90 112.5 91 94.0 92 58.5 93 23.0 94 16.0 95 9.0 96 9.0 97 5.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2504717.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.39472403634004 #Duplication Level Percentage of deduplicated Percentage of total 1 73.50595586930234 28.957468464985553 2 13.487070899655881 10.626388723009917 3 5.165800453498453 6.105158498771153 4 2.4839897629675134 3.9142436488479566 5 1.3721217737203992 2.702717930998427 6 0.8327029391059129 1.9682461494196022 7 0.5402778184896646 1.4898866893649307 8 0.3763388354180307 1.186061165236073 9 0.2707793039756927 0.9600548359387182 >10 1.661217871477138 12.42617820054624 >50 0.1784905845132331 4.8628073542210615 >100 0.10868016081288796 7.9597108867596145 >500 0.007263793959617834 1.9606867817623028 >1k 0.007877635702684127 6.544046046455421 >5k 6.138417430662956E-4 1.6456339826125754 >10k+ 8.184556574217275E-4 6.6907106410704715 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 39419 1.573790571948847 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38754 1.5472406663108047 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32425 1.2945574290428818 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13364 0.5335532916493161 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 11046 0.4410079062824263 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 10572 0.4220836126396715 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10409 0.41557589140809126 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10019 0.4000052700564575 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 9784 0.39062297257534484 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8708 0.34766402751288866 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6472 0.25839246509685526 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5515 0.22018455578015403 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5335 0.21299811515632308 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5017 0.2003020700542217 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4723 0.1885642170352978 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4573 0.18257551651543868 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4249 0.16963992339254294 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3825 0.1527118632564078 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3789 0.1512745751316416 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3771 0.15055593106925852 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3647 0.14560527197284165 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3641 0.14536572395204728 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3277 0.1308331440238558 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3264 0.13031412331213468 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3202 0.12783879376392623 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 3197 0.12763917041326425 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 3090 0.12336723070909808 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3046 0.12161054522327272 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2804 0.11194877505123332 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 2794 0.1115495283499094 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 2778 0.1109107336277911 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 2771 0.11063126093686432 No Hit ATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGGA 2747 0.10967306885368686 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCCT 2575 0.10280602559091506 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 2565 0.10240677888959113 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 2506 0.10005122335177986 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 3.9924670132394196E-5 0.0 0.0 0.0 0.0 6 7.984934026478839E-5 0.0 0.0 0.0 0.0 7 7.984934026478839E-5 0.0 0.0 0.0 0.0 8 1.197740103971826E-4 0.0 0.0 0.0 0.0 9 1.197740103971826E-4 0.0 0.0 7.984934026478839E-5 0.0 10 1.5969868052957678E-4 0.0 0.0 1.5969868052957678E-4 0.0 11 1.5969868052957678E-4 0.0 0.0 3.99246701323942E-4 0.0 12 1.5969868052957678E-4 0.0 0.0 7.98493402647884E-4 0.0 13 1.5969868052957678E-4 0.0 0.0 9.182674130450665E-4 0.0 14 1.99623350661971E-4 0.0 0.0 0.0012775894442366143 0.0 15 1.99623350661971E-4 0.0 0.0 0.0017167608156929506 0.0 16 1.99623350661971E-4 0.0 0.0 0.002235781527414075 0.0 17 1.99623350661971E-4 0.0 0.0 0.003193973610591536 0.0 18 1.99623350661971E-4 0.0 0.0 0.003832768332709843 0.0 19 1.99623350661971E-4 0.0 0.0 0.004950659096416881 0.0 20 1.99623350661971E-4 0.0 0.0 0.008384180727802781 0.0 21 1.99623350661971E-4 0.0 0.0 0.014093408556735153 0.0 22 1.99623350661971E-4 0.0 0.0 0.02327608268718582 0.0 23 1.99623350661971E-4 0.0 0.0 0.02930470787717734 0.0 24 2.395480207943652E-4 0.0 0.0 0.03697024454259703 0.0 25 2.395480207943652E-4 0.0 0.0 0.04283917105205898 0.0 26 2.794726909267594E-4 0.0 0.0 0.05441732539045329 0.0 27 2.794726909267594E-4 0.0 0.0 0.13434651499550648 0.0 28 2.794726909267594E-4 0.0 0.0 0.23771148596827507 0.0 29 2.794726909267594E-4 0.0 0.0 0.35556911219910275 0.0 30 3.99246701323942E-4 0.0 0.0 0.5683676040047638 0.0 31 4.391713714563362E-4 0.0 0.0 0.8432888825364303 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9615 0.0 29.861675 1 TCACGTT 125 0.0 25.16 24 GTATTGG 850 0.0 22.417645 1 ATTGGAC 865 0.0 21.815031 3 CGCGATA 85 5.1868483E-8 21.764706 14 TTGGACC 1480 0.0 19.5 4 TGGACCC 1500 0.0 19.363335 5 GGACCCT 1535 0.0 18.68078 6 GACCCTC 1525 0.0 18.439344 7 ACGTGCG 105 4.8028414E-7 17.619047 9 TATTGGA 1090 0.0 17.311926 2 GTCCCGA 110 7.816652E-7 16.818182 11 GTATCAA 17185 0.0 16.73989 2 GTGCGCG 115 1.2435503E-6 16.086956 11 TGCGCGA 105 9.351823E-6 15.857142 12 GCGATAT 105 9.351823E-6 15.857142 15 TACTACG 105 9.351823E-6 15.857142 5 TTTTTAC 1955 0.0 15.6138115 1 GCGGACT 120 1.937622E-6 15.416666 37 ACGTTTA 205 5.456968E-12 15.341463 26 >>END_MODULE