##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088302_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3217318 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.93166419980866 31.0 31.0 33.0 28.0 34.0 2 31.242330102277737 31.0 31.0 34.0 28.0 34.0 3 31.296261358062832 31.0 31.0 34.0 28.0 34.0 4 35.18728984825249 35.0 35.0 37.0 33.0 37.0 5 34.95470637344521 35.0 35.0 37.0 32.0 37.0 6 35.00880329516697 36.0 35.0 37.0 32.0 37.0 7 34.82041066503218 35.0 35.0 37.0 32.0 37.0 8 34.88671122966396 36.0 35.0 37.0 32.0 37.0 9 36.35115210868183 38.0 35.0 39.0 32.0 39.0 10 36.16328289587787 38.0 35.0 39.0 31.0 39.0 11 36.259297961842755 38.0 35.0 39.0 32.0 39.0 12 36.008754185939964 38.0 35.0 39.0 30.0 39.0 13 36.10211579955727 38.0 35.0 39.0 31.0 39.0 14 36.90291292312417 39.0 36.0 40.0 31.0 41.0 15 37.03405787056175 39.0 36.0 40.0 31.0 41.0 16 37.00452022460944 38.0 36.0 40.0 31.0 41.0 17 37.09478049729619 39.0 36.0 40.0 31.0 41.0 18 37.10994561308519 39.0 36.0 40.0 31.0 41.0 19 37.200410714763045 39.0 36.0 40.0 31.0 41.0 20 37.18182971033637 39.0 36.0 40.0 31.0 41.0 21 37.11931801581317 39.0 36.0 40.0 31.0 41.0 22 37.046054197937536 39.0 36.0 40.0 31.0 41.0 23 36.927303113960136 39.0 35.0 40.0 31.0 41.0 24 36.84223847316305 39.0 35.0 40.0 31.0 41.0 25 36.712597573506876 38.0 35.0 40.0 30.0 41.0 26 36.46560924347547 38.0 35.0 40.0 30.0 41.0 27 36.33093495886947 38.0 35.0 40.0 30.0 41.0 28 36.15787528618557 38.0 35.0 40.0 30.0 41.0 29 35.94562769362556 38.0 34.0 40.0 29.0 41.0 30 35.713807587562066 38.0 34.0 40.0 28.0 41.0 31 35.45380624482877 38.0 34.0 40.0 27.0 41.0 32 35.33991262287408 38.0 34.0 40.0 27.0 41.0 33 35.14516501011091 37.0 33.0 40.0 27.0 41.0 34 35.288957137591 38.0 34.0 40.0 27.0 41.0 35 35.20113523127027 38.0 34.0 40.0 26.0 41.0 36 35.11971088962919 38.0 34.0 40.0 26.0 41.0 37 34.99139252010526 38.0 33.0 40.0 25.0 41.0 38 34.934770203007595 38.0 33.0 40.0 25.0 41.0 39 34.80998707619203 38.0 33.0 40.0 24.0 41.0 40 34.59820011574858 38.0 33.0 40.0 23.0 41.0 41 34.4593108297035 38.0 33.0 40.0 23.0 41.0 42 34.28082862806847 38.0 33.0 40.0 22.0 41.0 43 33.8972460913096 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 3.0 15 9.0 16 38.0 17 112.0 18 268.0 19 648.0 20 1455.0 21 2793.0 22 5078.0 23 8727.0 24 14214.0 25 22350.0 26 33426.0 27 48049.0 28 67263.0 29 88992.0 30 112867.0 31 138404.0 32 166521.0 33 200035.0 34 238414.0 35 282791.0 36 346572.0 37 438447.0 38 517784.0 39 482056.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.22455971091449 22.571253447747473 14.761083610634696 22.443103230703336 2 18.43535516228113 23.98040852660508 35.77712865187712 21.807107659236667 3 19.580408277950763 25.127792776467857 33.67133743074201 21.620461514839377 4 13.322867058835964 16.514500587134997 36.48784484468119 33.67478750934785 5 11.850429457081955 38.93991827975973 35.49288568926043 13.716766573897887 6 31.413804914528185 37.43565292582207 13.526173042266882 17.624369117382862 7 24.311833645290893 34.6020816095891 21.882791816040566 19.20329292907944 8 26.341474482783482 34.623683453112186 19.513924330762457 19.520917733341868 9 23.724356746830747 14.584197148059348 23.45988180217187 38.23156430293804 10 15.975977506730763 27.721878906592384 34.30465996833387 21.99748361834298 11 31.81047070883264 22.54800426939457 24.900615978899197 20.740909042873596 12 20.896069334768896 27.406864972626266 31.696276215158093 20.00078947744674 13 31.45287472360519 21.40963373841193 27.82143387753402 19.316057660448855 14 19.813148715793712 23.62595180209106 29.18427709042128 27.37662239169395 15 21.32574398924819 29.917527580425684 27.299508472584925 21.4572199577412 16 20.78669251842684 28.93425517775986 28.0874007480765 22.191651555736797 17 20.654346259835055 26.96304810404194 27.936716233832033 24.445889402290977 18 22.62054916548504 25.263526950086995 31.507547590881597 20.608376293546364 19 21.846923431255476 24.560798777118084 32.88614927091447 20.70612852071197 20 22.998969949504524 23.86904247575154 33.05818697436809 20.07380060037584 21 21.77773536840312 24.84936210843939 33.62036329638538 19.75253922677211 22 19.752072999933485 25.308782035223125 33.045381277200455 21.893763687642938 23 21.345232271102827 25.572044790101568 34.24078689144188 18.841936047353727 24 21.163310558670297 25.413558746757392 31.482775404855843 21.940355289716464 25 20.879347332156783 26.132698104446 32.627393375476096 20.36056118792112 26 20.66149507136068 27.029998278068877 32.27958815385983 20.028918496710617 27 19.092206614329076 27.10959874031725 31.947572481178423 21.850622164175252 28 19.979249797502145 26.305077707581283 32.12933878466474 21.586333710251832 29 20.26899423681464 26.083992940704025 31.08853399011226 22.558478832369072 30 20.57229033623658 26.41290043446125 33.234980191575715 19.779829037726454 31 21.819011984516294 25.935732806020418 32.847172707205196 19.39808250225809 32 20.877699997326964 26.19737930785828 31.445011030927 21.479909663887746 33 20.522714882395835 26.014991368587125 32.30687796481418 21.155415784202866 34 19.38863363832857 26.94331116787336 33.14453218488194 20.523523008916122 35 18.971951171752373 29.341302289671084 31.50571376531633 20.181032773260213 36 21.86488870543726 26.555907746762987 31.08194465079299 20.497258897006763 37 20.838816678985417 27.583564944466165 30.94664562222323 20.630972754325185 38 20.564955033975505 25.74283922198552 32.36235895861086 21.32984678542811 39 20.03827411527241 25.412284393398476 33.231809849073045 21.317631642256067 40 18.472093837164994 26.17639910012004 32.76685736380426 22.58464969891071 41 20.56806321289969 25.13854707554553 32.68850017312557 21.604889538429216 42 19.044371740685875 27.63612425007413 31.820416881390027 21.49908712784997 43 19.37181839034873 27.874055346720468 30.588800982681846 22.16532528024895 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 213.0 1 347.5 2 482.0 3 1393.5 4 2305.0 5 2305.0 6 3896.5 7 5488.0 8 6279.5 9 7071.0 10 10858.0 11 14645.0 12 14645.0 13 27581.5 14 40518.0 15 67230.5 16 93943.0 17 90899.5 18 87856.0 19 87856.0 20 93548.0 21 99240.0 22 80589.0 23 61938.0 24 66834.0 25 71730.0 26 71730.0 27 76606.5 28 81483.0 29 84861.0 30 88239.0 31 94896.0 32 101553.0 33 101553.0 34 111333.0 35 121113.0 36 132300.0 37 143487.0 38 149774.0 39 156061.0 40 156061.0 41 162335.0 42 168609.0 43 174680.0 44 180751.0 45 198141.0 46 215531.0 47 215531.0 48 297303.5 49 379076.0 50 343958.0 51 308840.0 52 272327.0 53 235814.0 54 235814.0 55 201618.5 56 167423.0 57 137608.5 58 107794.0 59 94776.0 60 81758.0 61 81758.0 62 71700.5 63 61643.0 64 53037.0 65 44431.0 66 37764.0 67 31097.0 68 31097.0 69 26504.5 70 21912.0 71 18122.5 72 14333.0 73 11972.0 74 9611.0 75 9611.0 76 7407.0 77 5203.0 78 4021.0 79 2839.0 80 2230.5 81 1622.0 82 1622.0 83 1215.5 84 809.0 85 627.0 86 445.0 87 346.5 88 248.0 89 248.0 90 181.5 91 115.0 92 74.0 93 33.0 94 21.5 95 10.0 96 10.0 97 6.0 98 2.0 99 3.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3217318.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.78795251667981 #Duplication Level Percentage of deduplicated Percentage of total 1 72.42939808332095 28.093880536675524 2 13.90978869171786 10.790644465828043 3 5.397554940244765 6.280803141851534 4 2.5690986608685416 3.9860030747373867 5 1.4653496942140527 2.8418957179752975 6 0.9024665650205892 2.100289816314585 7 0.6190811748177416 1.6809023848960638 8 0.4091705870132978 1.2696711440235038 9 0.3112484741884863 1.086542193394084 >10 1.675436868450477 12.279468844639108 >50 0.1738242358755395 4.705700884521112 >100 0.12125792776355299 8.967725797768527 >500 0.008242860611047393 2.180202083807797 >1k 0.006707425791322361 5.772924604998339 >5k 5.65686512521163E-4 1.3586689381262684 >10k+ 8.081235893159472E-4 6.6046763704425775 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 44293 1.3767056908891195 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 43625 1.3559430556755658 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 37247 1.157703403891067 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15039 0.4674390284081337 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 12467 0.3874966664781038 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 12271 0.3814046357867018 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 11799 0.3667340312645502 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11758 0.36545967790563444 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 11309 0.3515039545360452 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10898 0.33872933915764625 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7678 0.23864597779889957 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6639 0.20635199877662075 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6242 0.1940125284476076 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6108 0.18984756868920014 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5660 0.17592292710885277 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5629 0.17495939164235552 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5389 0.16749976222431232 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4644 0.14434382923913644 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4367 0.1357341736191449 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4352 0.13526794678051718 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4251 0.13212868606709066 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4150 0.12898942535366414 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3956 0.12295955824074586 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3922 0.12190277740652307 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3863 0.12006895184125412 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3643 0.11323095820804782 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 3547 0.11024710644083054 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 3344 0.10393750322473565 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 3.108178924184678E-5 0.0 5 0.0 0.0 0.0 3.108178924184678E-5 0.0 6 0.0 0.0 0.0 3.108178924184678E-5 0.0 7 0.0 0.0 0.0 3.108178924184678E-5 0.0 8 0.0 0.0 0.0 3.108178924184678E-5 0.0 9 0.0 0.0 0.0 9.324536772554034E-5 0.0 10 0.0 0.0 0.0 2.7973610317662105E-4 0.0 11 0.0 0.0 0.0 5.283904171113952E-4 0.0 12 0.0 0.0 0.0 7.459629418043228E-4 0.0 13 0.0 0.0 0.0 9.013718880135567E-4 0.0 14 0.0 0.0 0.0 0.0011811079911901777 0.0 15 0.0 0.0 0.0 0.001554089462092339 0.0 16 0.0 0.0 0.0 0.0023932977716222023 0.0 17 0.0 0.0 0.0 0.003108178924184678 0.0 18 0.0 0.0 0.0 0.00357440576281238 0.0 19 0.0 0.0 0.0 0.0048487591217280974 0.0 20 0.0 0.0 0.0 0.00829883772757309 0.0 21 0.0 0.0 0.0 0.013800314423379971 0.0 22 0.0 0.0 0.0 0.021881579626260132 0.0 23 0.0 0.0 0.0 0.0270411566404067 0.0 24 0.0 0.0 0.0 0.03493593110783578 0.0 25 0.0 0.0 0.0 0.040188753489707886 0.0 26 0.0 0.0 0.0 0.05088088898890318 0.0 27 0.0 0.0 0.0 0.13989913337755236 0.0 28 0.0 0.0 0.0 0.2485610685670487 0.0 29 0.0 0.0 0.0 0.36645429516137357 0.0 30 0.0 0.0 0.0 0.5771577444318529 0.0 31 0.0 0.0 0.0 0.863358859770778 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10515 0.0 30.84213 1 GTATTGG 1085 0.0 22.67742 1 ATTGGAC 1235 0.0 20.072874 3 GGACCCT 1885 0.0 18.74536 6 TTGGACC 2035 0.0 17.636364 4 GTATCAA 18615 0.0 17.48133 2 GACCCTC 1995 0.0 17.155388 7 CGTGTCT 285 0.0 16.877193 35 TATTGGA 1490 0.0 16.513422 2 TGGACCC 2155 0.0 16.4826 5 CTAGTAC 400 0.0 16.1875 3 TATACCG 235 0.0 15.744681 5 CGCCGGA 230 0.0 15.282609 14 CTAACGG 110 1.4534044E-5 15.136364 27 TGCGATT 135 3.9783117E-7 15.074075 29 CGACCGC 260 0.0 14.942307 10 TTACGGG 100 1.0943353E-4 14.8 14 ACGTTTA 175 2.242814E-9 14.799999 26 CCGACCG 270 0.0 14.388889 9 ACCCTCG 2405 0.0 14.384615 8 >>END_MODULE