##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088298_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2886348 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.70744969075108 31.0 30.0 31.0 28.0 34.0 2 30.998343928036398 31.0 31.0 34.0 28.0 34.0 3 31.024435722927382 31.0 31.0 34.0 27.0 34.0 4 34.92192278962897 35.0 35.0 37.0 32.0 37.0 5 34.680869735735264 35.0 35.0 37.0 32.0 37.0 6 34.770182943983194 35.0 35.0 37.0 32.0 37.0 7 34.56859533223298 35.0 35.0 37.0 30.0 37.0 8 34.657817075418485 35.0 35.0 37.0 30.0 37.0 9 36.073520933719706 38.0 35.0 39.0 31.0 39.0 10 35.84912872598869 37.0 35.0 39.0 30.0 39.0 11 35.97338262745864 37.0 35.0 39.0 30.0 39.0 12 35.720194515699426 37.0 35.0 39.0 30.0 39.0 13 35.81054467444674 37.0 35.0 39.0 30.0 39.0 14 36.556917946138164 38.0 35.0 40.0 30.0 41.0 15 36.67343230961755 38.0 35.0 40.0 31.0 41.0 16 36.623158745930844 38.0 35.0 40.0 30.0 41.0 17 36.73739549077242 38.0 36.0 40.0 31.0 41.0 18 36.74782042913744 38.0 36.0 40.0 31.0 41.0 19 36.85347747395671 39.0 36.0 40.0 31.0 41.0 20 36.83467551383271 39.0 36.0 40.0 31.0 41.0 21 36.758593211906536 39.0 35.0 40.0 30.0 41.0 22 36.67455414246653 38.0 35.0 40.0 30.0 41.0 23 36.53734269048638 38.0 35.0 40.0 30.0 41.0 24 36.45602401373639 38.0 35.0 40.0 30.0 41.0 25 36.319697763402054 38.0 35.0 40.0 30.0 41.0 26 36.03729938316516 38.0 34.0 40.0 29.0 41.0 27 35.89534872440884 38.0 34.0 40.0 29.0 41.0 28 35.70720474454224 38.0 34.0 40.0 28.0 41.0 29 35.49474422349627 38.0 34.0 40.0 27.0 41.0 30 35.25825749355241 38.0 34.0 40.0 27.0 41.0 31 34.959753640240194 37.0 33.0 40.0 26.0 41.0 32 34.85220908913271 37.0 33.0 40.0 26.0 41.0 33 34.646991284488216 37.0 33.0 40.0 25.0 41.0 34 34.78180940066825 37.0 33.0 40.0 25.0 41.0 35 34.67738124439603 37.0 33.0 40.0 25.0 41.0 36 34.593429482515624 37.0 33.0 40.0 25.0 41.0 37 34.469682796391844 37.0 33.0 40.0 24.0 41.0 38 34.38778865195742 37.0 33.0 40.0 24.0 41.0 39 34.25341712087385 37.0 33.0 40.0 23.0 41.0 40 34.0277121816219 37.0 33.0 40.0 22.0 41.0 41 33.86665883670299 37.0 33.0 40.0 21.0 41.0 42 33.661089030151594 37.0 32.0 40.0 20.0 41.0 43 33.271510919681205 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 6.0 15 20.0 16 49.0 17 136.0 18 348.0 19 855.0 20 1689.0 21 3475.0 22 6207.0 23 10619.0 24 16900.0 25 25232.0 26 37256.0 27 52180.0 28 70583.0 29 91411.0 30 113905.0 31 136539.0 32 161321.0 33 190818.0 34 224818.0 35 263060.0 36 319345.0 37 396753.0 38 453227.0 39 309595.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.96811888240781 23.5682946061944 14.894635019755068 21.568951491642725 2 19.188988992318322 24.91667671396519 34.83633990080198 21.057994392914505 3 20.659116641513776 25.7037266469601 33.65176340482852 19.9853933066976 4 13.844934845001363 17.093954020790285 36.40264444897151 32.658466685236846 5 11.446887208333854 39.762149262666874 35.4701512083782 13.320812320621075 6 31.15497507577049 37.64158029454522 13.21188574627869 17.991558883405602 7 23.971191277004714 34.93650107332865 21.86770271637377 19.224604933292866 8 26.600014967010218 34.62236708809887 19.48760163362145 19.290016311269465 9 23.576609611869394 14.33260992783961 23.592061664082088 38.49871879620891 10 15.882630923228938 27.939146630967578 34.45312207675582 21.725100369047667 11 31.537742503675926 22.41455292293237 25.22672248807143 20.82098208532027 12 20.72269178907048 27.563550895456817 32.07277847300464 19.64097884246806 13 31.992711897525872 21.02431861993079 28.293608393721065 18.689361088822277 14 19.736843928729314 23.51923607271195 29.4255924788002 27.318327519758533 15 21.19023762900385 29.895598174579085 27.805552206456046 21.108611989961016 16 20.369650506453137 29.002843731940846 28.78277324840941 21.844732513196607 17 20.514296959341006 26.789458512972104 28.377589951038473 24.318654576648417 18 22.44032944052484 24.856011818394734 32.11670941965418 20.586949321426246 19 21.51937327030559 23.97229994442805 33.793846064299935 20.714480720966424 20 22.8987634200727 23.399499990992076 33.959730427516014 19.742006161419205 21 21.802499213539047 24.303964733289263 34.67003978730215 19.223496265869535 22 19.41806739866433 24.80910132804499 34.00982833670784 21.763002936582836 23 21.24511666645879 25.15379295913036 35.31441808125701 18.286672293153842 24 20.95658596953659 24.787482313290013 32.328915293651356 21.92701642352204 25 20.707828716426434 25.82159185240311 33.35037909496707 20.120200336203396 26 20.466208509853974 26.605003970415208 33.17382380780142 19.7549637119294 27 18.83379966656827 26.932788423294767 32.89495930497639 21.338452605160573 28 19.954523848129195 25.99312349030678 32.90566487478294 21.146687786781083 29 20.01432259727517 25.73944652550559 31.934749378799783 22.311481498419454 30 20.35835595707794 26.09189882855428 34.136528235680515 19.413216978687252 31 21.711172734542057 25.690526575451056 33.60350172605659 18.994798963950295 32 21.054945557500343 25.85693062652182 31.980759076868072 21.10736473910977 33 20.53487659838661 25.99433609530105 32.7616420473207 20.70914525899164 34 19.32057395712506 27.129611536793206 33.61365296215148 19.936161543930254 35 18.707134413452568 29.93041726084311 31.927161936121358 19.435286389582963 36 21.894969005816346 26.686872130456894 31.51809830276876 19.900060560958 37 20.824065566591415 28.16614628589484 31.161245975883713 19.848542171630033 38 20.779545640373236 25.89344735977782 32.68892039352151 20.63808660632744 39 20.200751953679873 25.762312791111814 33.437721300411454 20.59921395479686 40 18.43706995830025 26.78834984554877 32.45083406436092 22.323746131790067 41 20.9935877447903 25.576437768418774 32.419029167654074 21.010945319136848 42 19.158569929890643 28.405479865906674 31.55582764101903 20.88012256318365 43 19.70919653485997 28.649767803466524 30.03577531191665 21.605260349756854 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 267.0 1 331.0 2 395.0 3 1060.5 4 1726.0 5 1726.0 6 3384.5 7 5043.0 8 5561.5 9 6080.0 10 9591.0 11 13102.0 12 13102.0 13 25910.0 14 38718.0 15 64883.5 16 91049.0 17 87215.0 18 83381.0 19 83381.0 20 89471.5 21 95562.0 22 76640.0 23 57718.0 24 61802.5 25 65887.0 26 65887.0 27 70848.5 28 75810.0 29 79061.0 30 82312.0 31 88467.5 32 94623.0 33 94623.0 34 102867.5 35 111112.0 36 119780.5 37 128449.0 38 133482.0 39 138515.0 40 138515.0 41 142840.0 42 147165.0 43 152204.5 44 157244.0 45 171766.0 46 186288.0 47 186288.0 48 264672.0 49 343056.0 50 313012.0 51 282968.0 52 249503.5 53 216039.0 54 216039.0 55 182288.0 56 148537.0 57 119753.5 58 90970.0 59 78896.5 60 66823.0 61 66823.0 62 58035.0 63 49247.0 64 42700.0 65 36153.0 66 30592.0 67 25031.0 68 25031.0 69 21498.0 70 17965.0 71 15150.5 72 12336.0 73 9902.0 74 7468.0 75 7468.0 76 6004.5 77 4541.0 78 3428.5 79 2316.0 80 1769.5 81 1223.0 82 1223.0 83 933.0 84 643.0 85 491.0 86 339.0 87 239.5 88 140.0 89 140.0 90 107.5 91 75.0 92 47.5 93 20.0 94 14.0 95 8.0 96 8.0 97 5.0 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2886348.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.37426157623207 #Duplication Level Percentage of deduplicated Percentage of total 1 73.9317685542389 29.8494056240229 2 13.556000320526964 10.94627005736883 3 5.148172682505047 6.235610115692134 4 2.3389281799398725 3.7772999257965125 5 1.2523122147652999 2.528059046702237 6 0.7848699629482554 1.901312711244026 7 0.49520600359898426 1.399550370639814 8 0.3506576199108845 1.1326033975984813 9 0.2702602159322008 0.9820400986526074 >10 1.5971179528895454 12.299796233752522 >50 0.15893292078976962 4.4615724808581145 >100 0.10042940863573008 7.541869504612429 >500 0.007413375535939586 2.0593194006650335 >1k 0.006378951042552121 5.7773706356324706 >5k 6.896163289245536E-4 1.6255641583041314 >10k+ 8.62020411155692E-4 7.4823562384577675 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 45053 1.5608997944807765 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 43899 1.5209184755268594 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 36034 1.2484288103859964 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15705 0.5441131838572479 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 14227 0.4929066072420928 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13790 0.4777663677422127 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 12037 0.41703218045779655 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 11896 0.4121471146237391 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 11869 0.41121167648530255 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 10479 0.36305393528431085 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6928 0.24002649715141763 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6263 0.2169870022602957 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6251 0.21657125197654614 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5633 0.19516011236344336 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5607 0.19425932008198596 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5570 0.19297742337375812 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5353 0.18545927240928675 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 5102 0.17676316230752492 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4629 0.16037567195639613 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4505 0.1560795856909839 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 4420 0.15313468784775777 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4316 0.14953151872192819 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4238 0.146829141877556 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3977 0.13778657320600288 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3971 0.1375786980641281 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3481 0.12060222814435405 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3341 0.11575180816727575 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 3308 0.11460849488696442 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3242 0.11232186832634179 No Hit CGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAG 3095 0.10722892735040958 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 3075 0.10653601021082698 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 3062 0.10608561407009828 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 2978 0.10317536208385128 No Hit ATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGGA 2927 0.10140842337791561 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.464585697913072E-5 0.0 0.0 0.0 0.0 2 3.464585697913072E-5 0.0 0.0 0.0 0.0 3 6.929171395826145E-5 1.0393757093739216E-4 0.0 0.0 0.0 4 6.929171395826145E-5 1.0393757093739216E-4 0.0 3.464585697913072E-5 0.0 5 6.929171395826145E-5 1.0393757093739216E-4 0.0 3.464585697913072E-5 0.0 6 1.385834279165229E-4 1.0393757093739216E-4 0.0 3.464585697913072E-5 0.0 7 1.732292848956536E-4 1.0393757093739216E-4 0.0 3.464585697913072E-5 0.0 8 2.4252099885391505E-4 1.0393757093739216E-4 0.0 6.929171395826145E-5 0.0 9 2.4252099885391505E-4 1.0393757093739216E-4 0.0 6.929171395826145E-5 0.0 10 2.4252099885391505E-4 1.0393757093739216E-4 0.0 1.0393757093739216E-4 0.0 11 2.4252099885391505E-4 1.0393757093739216E-4 0.0 2.0787514187478433E-4 0.0 12 2.4252099885391505E-4 1.0393757093739216E-4 0.0 4.850419977078301E-4 0.0 13 3.118127128121765E-4 1.732292848956536E-4 0.0 5.196878546869609E-4 0.0 14 3.118127128121765E-4 1.732292848956536E-4 0.0 6.23625425624353E-4 0.0 15 3.118127128121765E-4 1.732292848956536E-4 0.0 0.0010393757093739217 0.0 16 3.118127128121765E-4 1.732292848956536E-4 0.0 0.0015244177070817518 0.0 17 3.464585697913072E-4 1.732292848956536E-4 0.0 0.0021826889896852356 0.0 18 3.464585697913072E-4 3.464585697913072E-4 0.0 0.0025291475594765426 0.0 19 4.503961407286994E-4 5.543337116660916E-4 0.0 0.0030834812711426343 0.0 20 4.503961407286994E-4 6.23625425624353E-4 0.0 0.004989003404994824 0.0 21 4.503961407286994E-4 6.582712826034837E-4 0.0 0.009770131668114863 0.0 22 4.503961407286994E-4 6.582712826034837E-4 0.0 0.016144969352274916 0.0 23 4.503961407286994E-4 6.582712826034837E-4 0.0 0.020094597047895818 0.0 24 4.503961407286994E-4 6.582712826034837E-4 0.0 0.02442532917028716 0.0 25 4.503961407286994E-4 6.582712826034837E-4 0.0 0.028063144153095885 0.0 26 4.850419977078301E-4 6.582712826034837E-4 0.0 0.034645856979130724 0.0 27 5.196878546869609E-4 6.582712826034837E-4 0.0 0.08460518274303722 0.0 28 5.196878546869609E-4 6.582712826034837E-4 0.0 0.14991262314869863 0.0 29 5.543337116660916E-4 6.582712826034837E-4 0.0 0.22405475708403838 0.0 30 5.543337116660916E-4 6.929171395826144E-4 0.0 0.3610791214365004 0.0 31 6.23625425624353E-4 6.929171395826144E-4 0.0 0.5145256219970703 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10060 0.0 31.115307 1 GTATTGG 895 0.0 22.73743 1 ATTGGAC 990 0.0 20.929293 3 TTGGACC 1800 0.0 18.397223 4 GTATCAA 17605 0.0 17.801193 2 GGACCCT 1800 0.0 17.780556 6 TGGACCC 1820 0.0 17.686813 5 CGTGTCT 305 0.0 16.983606 35 TATTGGA 1250 0.0 16.576 2 GACCCTC 1885 0.0 16.488062 7 TTTTTAC 2160 0.0 16.016205 1 TATACCG 155 7.221388E-9 15.516129 5 GATACCT 1215 0.0 15.3786 36 CGAATTA 145 5.3541953E-8 15.310345 15 TTGATAC 3235 0.0 15.268933 34 GATACTG 1010 0.0 15.019802 36 AAACGCG 75 0.004106405 14.8 5 ATACCTG 1365 0.0 14.366302 37 ACGTTTA 245 0.0 14.34694 26 TGATACC 2390 0.0 14.242677 35 >>END_MODULE