##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088297_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3510937 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.92938209942246 31.0 31.0 33.0 28.0 34.0 2 31.246595994174776 31.0 31.0 34.0 28.0 34.0 3 31.31365843363182 31.0 31.0 34.0 28.0 34.0 4 35.20451292632138 35.0 35.0 37.0 33.0 37.0 5 34.965856977781144 35.0 35.0 37.0 32.0 37.0 6 35.00915282729368 36.0 35.0 37.0 32.0 37.0 7 34.81613996491535 35.0 35.0 37.0 32.0 37.0 8 34.87639595925532 35.0 35.0 37.0 32.0 37.0 9 36.347491567066 38.0 35.0 39.0 32.0 39.0 10 36.150955143883245 38.0 35.0 39.0 31.0 39.0 11 36.24982561635256 38.0 35.0 39.0 32.0 39.0 12 35.99392640767977 38.0 35.0 39.0 30.0 39.0 13 36.079129303658824 38.0 35.0 39.0 31.0 39.0 14 36.89078641969366 39.0 36.0 40.0 31.0 41.0 15 37.020991262446465 39.0 36.0 40.0 31.0 41.0 16 36.99294461848788 38.0 36.0 40.0 31.0 41.0 17 37.07537190214464 39.0 36.0 40.0 31.0 41.0 18 37.08579248217784 39.0 36.0 40.0 31.0 41.0 19 37.18042106708266 39.0 36.0 40.0 31.0 41.0 20 37.15974709885139 39.0 36.0 40.0 31.0 41.0 21 37.08372579741533 39.0 36.0 40.0 31.0 41.0 22 37.01259863107769 39.0 36.0 40.0 31.0 41.0 23 36.89390239699544 39.0 35.0 40.0 31.0 41.0 24 36.80699254928243 39.0 35.0 40.0 30.0 41.0 25 36.68247365304476 38.0 35.0 40.0 30.0 41.0 26 36.432930297524564 38.0 35.0 40.0 30.0 41.0 27 36.30989134809312 38.0 35.0 40.0 30.0 41.0 28 36.139181363835355 38.0 35.0 40.0 30.0 41.0 29 35.91978779454032 38.0 34.0 40.0 29.0 41.0 30 35.70349681580729 38.0 34.0 40.0 28.0 41.0 31 35.4535866066523 38.0 34.0 40.0 27.0 41.0 32 35.342545309129726 38.0 34.0 40.0 27.0 41.0 33 35.151961427960686 37.0 33.0 40.0 27.0 41.0 34 35.29019147879897 38.0 34.0 40.0 27.0 41.0 35 35.216798250723386 38.0 34.0 40.0 26.0 41.0 36 35.147582255107395 38.0 34.0 40.0 26.0 41.0 37 35.027783466351 38.0 33.0 40.0 25.0 41.0 38 34.97493831418792 38.0 33.0 40.0 25.0 41.0 39 34.86158880093833 38.0 33.0 40.0 24.0 41.0 40 34.66200532792243 38.0 33.0 40.0 24.0 41.0 41 34.52318853912787 38.0 33.0 40.0 23.0 41.0 42 34.34598342265897 38.0 33.0 40.0 23.0 41.0 43 33.97626417107456 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 5.0 14 9.0 15 14.0 16 46.0 17 123.0 18 313.0 19 693.0 20 1464.0 21 2914.0 22 5381.0 23 9434.0 24 15392.0 25 24095.0 26 37068.0 27 52799.0 28 73464.0 29 96927.0 30 124680.0 31 150474.0 32 181740.0 33 218385.0 34 260841.0 35 307370.0 36 376768.0 37 477554.0 38 565306.0 39 527678.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.78857011675231 22.13961686011455 14.28262597705399 22.78918704607915 2 18.349090285584733 23.834378116155317 35.76486846673694 22.051663131523007 3 19.685314774944697 25.02924432993244 33.4638018284008 21.821639066722074 4 13.191236413527216 16.28807352567135 36.561692790272225 33.95899727052921 5 12.063816582296976 38.70584974894166 35.52840737387199 13.701926294889368 6 31.777101098652583 37.21382639449241 13.554529745193378 17.45454276166163 7 24.828500198095266 34.18326788546761 21.727533134317135 19.260698782119988 8 26.550006451269276 34.357922115947964 19.46685457471894 19.625216858063816 9 23.944348759319805 14.49222814308545 23.018556015103663 38.54486708249109 10 15.808201628226312 27.584288752546687 34.50235649343751 22.1051531257895 11 32.09459469081901 22.432644049152692 24.75353445533201 20.719226804696298 12 21.285229555528907 27.071918408105873 31.531924383718646 20.110927652646573 13 31.78228490001387 21.13660826155525 27.464320778185424 19.616786060245456 14 20.16524363723986 23.224313053751747 28.778158081446637 27.83228522756176 15 21.578228262141987 29.76043147456078 26.905182291792762 21.75615797150447 16 21.187221530890472 28.77021148485433 27.718583386714148 22.323983597541055 17 20.98804393243171 26.666328675222594 27.609723558127076 24.735903834218615 18 22.924136776023037 25.14109481315102 31.10528613871454 20.829482272111406 19 22.01893682512674 24.42638532106956 32.37204199334822 21.182635860455484 20 23.344679782063878 23.872202776637693 32.40519553612041 20.37792190517802 21 22.199942636395924 24.828015996869212 33.00198778844508 19.970053578289786 22 20.27370471187606 25.16342503439965 32.44700773611147 22.11586251761282 23 21.70571559671962 25.485447332150933 33.58804216652136 19.220794904608084 24 21.492951881506276 25.222184277302613 30.93385042226619 22.35101341892492 25 21.306847716150987 25.986196847166443 31.95466053648926 20.75229490019331 26 21.0153585780662 26.775103056534483 31.761492729718594 20.44804563568073 27 19.464803840114474 26.936569924211117 31.538788648158594 22.059837587515812 28 20.506577019183197 26.07648613461307 31.60948202716255 21.807454819041187 29 20.60637943660054 26.111434070164176 30.610432485686868 22.67175400754841 30 20.866423977416854 26.394293033455174 32.706738970252104 20.03254401887587 31 22.095554548543596 26.004112292530458 32.25207401898695 19.648259139938993 32 21.40422912743806 26.096908033382544 30.80314457365655 21.69571826552285 33 20.929683443479618 25.998700631768674 31.70925596215483 21.36235996259688 34 19.83259739494044 27.055654943395453 32.43339313693182 20.67835452473229 35 19.294564385518736 29.663790606325318 30.826215337956793 20.215429670199153 36 22.16040903040983 26.892308235664725 30.411909983004538 20.535372750920907 37 21.290384874465136 27.88839560493395 30.24337947391252 20.577840046688394 38 21.021225957628975 26.13860630367335 31.59786119773724 21.24230654096043 39 20.50577951128146 25.7609008649258 32.37996010751546 21.35335951627728 40 18.939815781371184 26.515229410268542 31.968930231445334 22.57602457691494 41 21.170359935253753 25.44967340627303 31.830961364444875 21.549005294028344 42 19.444268011644755 27.885632809702937 31.221978634193665 21.448120544458643 43 19.873013956103456 28.19771474110757 29.91227128256645 22.017000020222522 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 287.0 1 421.5 2 556.0 3 1554.5 4 2553.0 5 2553.0 6 4317.5 7 6082.0 8 6728.0 9 7374.0 10 11374.5 11 15375.0 12 15375.0 13 28805.5 14 42236.0 15 69416.5 16 96597.0 17 93773.0 18 90949.0 19 90949.0 20 95582.0 21 100215.0 22 82411.5 23 64608.0 24 70867.0 25 77126.0 26 77126.0 27 83201.0 28 89276.0 29 94786.0 30 100296.0 31 106424.0 32 112552.0 33 112552.0 34 122362.0 35 132172.0 36 142930.0 37 153688.0 38 159621.0 39 165554.0 40 165554.0 41 171199.5 42 176845.0 43 182903.5 44 188962.0 45 206022.0 46 223082.0 47 223082.0 48 310318.5 49 397555.0 50 366640.0 51 335725.0 52 300763.5 53 265802.0 54 265802.0 55 228993.5 56 192185.0 57 159846.0 58 127507.0 59 114032.5 60 100558.0 61 100558.0 62 88565.0 63 76572.0 64 66376.5 65 56181.0 66 47636.5 67 39092.0 68 39092.0 69 33416.0 70 27740.0 71 23499.5 72 19259.0 73 15468.5 74 11678.0 75 11678.0 76 9250.5 77 6823.0 78 5276.0 79 3729.0 80 2926.5 81 2124.0 82 2124.0 83 1591.0 84 1058.0 85 794.0 86 530.0 87 386.0 88 242.0 89 242.0 90 190.0 91 138.0 92 88.0 93 38.0 94 24.0 95 10.0 96 10.0 97 7.5 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3510937.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.09440767676827 #Duplication Level Percentage of deduplicated Percentage of total 1 70.7492786233918 27.65901141340146 2 14.238233175513592 11.132705847208307 3 5.807350950850086 6.811048367838033 4 2.928942163264604 4.580210359693681 5 1.7338162589361197 3.389125983172894 6 1.013041257978138 2.376254875967011 7 0.6604571372297806 1.8074126403124633 8 0.45664807401024043 1.4281908776133914 9 0.33804977371298095 1.1894270101717086 >10 1.8005155857169604 12.944778842879428 >50 0.1608149219297364 4.373790629416839 >100 0.09856228902560044 7.209344605204315 >500 0.006815129871806723 1.8119194584638065 >1k 0.006155601174114829 5.404302036914306 >5k 5.862477308680789E-4 1.4965252624167333 >10k+ 7.328096635850986E-4 6.3859517893256115 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 45496 1.2958364106220077 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 44780 1.275442994277596 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 39789 1.1332872107930163 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15990 0.45543397674182134 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 14724 0.4193752266132944 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 13881 0.39536454228600515 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 12644 0.36013178248427696 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 12302 0.35039079311306354 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 11728 0.3340418811274597 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 11571 0.32957014039272137 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 8041 0.22902717992376395 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7902 0.2250681228401421 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6916 0.19698445172898288 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6839 0.19479130499920677 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6005 0.17103696249747574 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5757 0.1639733210820929 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5746 0.1636600144064106 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 5031 0.14329508048706086 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4915 0.13999111917986565 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4896 0.13944995310368713 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4549 0.12956655160716357 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4357 0.12409792599525427 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 4218 0.12013886891163242 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 4095 0.11663553062900302 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3926 0.11182200079352035 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3873 0.1103124322652329 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 2.84824250620276E-5 0.0 0.0 0.0 2.84824250620276E-5 7 2.84824250620276E-5 0.0 0.0 0.0 5.69648501240552E-5 8 2.84824250620276E-5 0.0 0.0 0.0 5.69648501240552E-5 9 2.84824250620276E-5 0.0 0.0 2.84824250620276E-5 5.69648501240552E-5 10 2.84824250620276E-5 0.0 0.0 8.544727518608281E-5 5.69648501240552E-5 11 2.84824250620276E-5 0.0 0.0 1.4241212531013802E-4 5.69648501240552E-5 12 2.84824250620276E-5 0.0 0.0 3.4178910074433123E-4 8.544727518608281E-5 13 2.84824250620276E-5 0.0 0.0 4.842012260544692E-4 8.544727518608281E-5 14 2.84824250620276E-5 0.0 0.0 6.835782014886625E-4 8.544727518608281E-5 15 2.84824250620276E-5 0.0 0.0 9.114376019848832E-4 1.4241212531013802E-4 16 2.84824250620276E-5 0.0 0.0 0.001708945503721656 1.4241212531013802E-4 17 2.84824250620276E-5 0.0 0.0 0.0025919006806445115 1.4241212531013802E-4 18 2.84824250620276E-5 0.0 0.0 0.002905207356326815 1.4241212531013802E-4 19 2.84824250620276E-5 0.0 0.0 0.003702715258063588 1.4241212531013802E-4 20 2.84824250620276E-5 0.0 0.0 0.0056680025873434925 1.7089455037216561E-4 21 2.84824250620276E-5 0.0 0.0 0.009342235420345053 1.7089455037216561E-4 22 2.84824250620276E-5 0.0 0.0 0.01532354468337085 4.27236375930414E-4 23 2.84824250620276E-5 0.0 0.0 0.019738320567985128 4.557188009924416E-4 24 2.84824250620276E-5 0.0 0.0 0.024836674654088068 4.557188009924416E-4 25 2.84824250620276E-5 0.0 0.0 0.0284824250620276 4.557188009924416E-4 26 2.84824250620276E-5 0.0 0.0 0.03699867015557386 4.557188009924416E-4 27 5.69648501240552E-5 0.0 0.0 0.1008277847195777 4.557188009924416E-4 28 5.69648501240552E-5 0.0 0.0 0.17975258456645618 4.557188009924416E-4 29 5.69648501240552E-5 0.0 0.0 0.2698424950376495 4.557188009924416E-4 30 5.69648501240552E-5 0.0 0.0 0.42675217470435955 4.557188009924416E-4 31 5.69648501240552E-5 0.0 0.0 0.6256734313375603 4.842012260544692E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11145 0.0 29.181696 1 GTATTGG 1185 0.0 23.105484 1 ATTGGAC 1225 0.0 21.746939 3 TTGGACC 1990 0.0 20.26633 4 GGACCCT 2105 0.0 18.543943 6 TGGACCC 2240 0.0 18.41741 5 GTATCAA 19475 0.0 16.813864 2 GACCCTC 2370 0.0 16.080168 7 TATTGGA 1745 0.0 16.008595 2 TTTTTAC 2315 0.0 15.343413 1 CTAGTAC 460 0.0 14.880435 3 TACGACT 100 1.0943808E-4 14.799999 20 CGGTATA 200 6.184564E-11 14.799999 26 ATTCGCG 90 8.279986E-4 14.388888 17 ACGTTTA 225 2.7284841E-11 13.9777775 26 ATTGCGG 80 0.00630202 13.875001 8 ACCCTCG 2680 0.0 13.875 8 CCCTCGC 2700 0.0 13.840741 9 AACACCG 215 1.9826984E-10 13.767442 5 TACTAGG 275 0.0 13.454545 2 >>END_MODULE