##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088296_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2876668 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.944669318809122 31.0 31.0 33.0 28.0 34.0 2 31.267027338573655 31.0 31.0 34.0 28.0 34.0 3 31.3307468918902 31.0 31.0 34.0 28.0 34.0 4 35.2154583010622 35.0 35.0 37.0 33.0 37.0 5 34.982338942137226 35.0 35.0 37.0 32.0 37.0 6 35.0311575753615 36.0 35.0 37.0 32.0 37.0 7 34.83376983371039 35.0 35.0 37.0 32.0 37.0 8 34.89990468138833 36.0 35.0 37.0 32.0 37.0 9 36.37110295661508 38.0 35.0 39.0 32.0 39.0 10 36.17788636019172 38.0 35.0 39.0 32.0 39.0 11 36.28248098146884 38.0 35.0 39.0 32.0 39.0 12 36.036233586913745 38.0 35.0 39.0 30.0 39.0 13 36.114065648173515 38.0 35.0 39.0 31.0 39.0 14 36.9153416383121 39.0 36.0 40.0 31.0 41.0 15 37.04781365107131 39.0 36.0 40.0 31.0 41.0 16 37.015832901120326 39.0 36.0 40.0 31.0 41.0 17 37.107536914235496 39.0 36.0 40.0 31.0 41.0 18 37.11554757100924 39.0 36.0 40.0 31.0 41.0 19 37.20771044833815 39.0 36.0 40.0 31.0 41.0 20 37.192646840024636 39.0 36.0 40.0 31.0 41.0 21 37.117854754180875 39.0 36.0 40.0 31.0 41.0 22 37.036356645952885 39.0 36.0 40.0 31.0 41.0 23 36.910062961732116 39.0 35.0 40.0 31.0 41.0 24 36.82695882875605 39.0 35.0 40.0 30.0 41.0 25 36.71090928810693 38.0 35.0 40.0 30.0 41.0 26 36.46460314502751 38.0 35.0 40.0 30.0 41.0 27 36.3458497817614 38.0 35.0 40.0 30.0 41.0 28 36.172699108830074 38.0 35.0 40.0 30.0 41.0 29 35.95821763234409 38.0 34.0 40.0 29.0 41.0 30 35.731061770075655 38.0 34.0 40.0 28.0 41.0 31 35.479313219321796 38.0 34.0 40.0 27.0 41.0 32 35.365850699489826 38.0 34.0 40.0 27.0 41.0 33 35.1772286548187 38.0 33.0 40.0 27.0 41.0 34 35.313305185026564 38.0 34.0 40.0 27.0 41.0 35 35.21512771025367 38.0 34.0 40.0 26.0 41.0 36 35.15575520011347 38.0 34.0 40.0 26.0 41.0 37 35.034806936358315 38.0 33.0 40.0 25.0 41.0 38 34.992259099764034 38.0 33.0 40.0 25.0 41.0 39 34.879006545072286 38.0 33.0 40.0 24.0 41.0 40 34.67184117180015 38.0 33.0 40.0 24.0 41.0 41 34.54285652706534 38.0 33.0 40.0 23.0 41.0 42 34.351627646986024 38.0 33.0 40.0 23.0 41.0 43 33.99130799939374 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 0.0 14 3.0 15 10.0 16 33.0 17 93.0 18 214.0 19 488.0 20 1191.0 21 2306.0 22 4284.0 23 7498.0 24 12500.0 25 19494.0 26 29461.0 27 42378.0 28 59196.0 29 78802.0 30 100869.0 31 122768.0 32 147766.0 33 177563.0 34 212497.0 35 253338.0 36 311213.0 37 395609.0 38 467166.0 39 429926.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.65543886190551 22.275424206060624 14.251453417634568 22.8176835143993 2 18.214649726697694 23.756756080298455 36.13221963744165 21.896374555562197 3 19.677314170422168 25.031077621748494 33.737052729060146 21.55455547876919 4 13.104258120853709 16.052495456549035 36.759820737047164 34.08342568555009 5 11.962416239899772 38.72671437927491 35.66967060501941 13.641198775805899 6 31.880981746937774 37.04038839379449 13.35416530513775 17.724464554129987 7 24.889142577454194 34.278025827102745 21.63603863914779 19.19679295629527 8 26.523151090080603 34.25397021832203 19.409400041993027 19.813478649604335 9 23.793917129123 14.581696601762872 23.2585755464308 38.36581072268332 10 15.829146776756996 27.415607223357025 34.5793466607895 22.175899339096482 11 31.940668857163914 22.269340778984574 25.00045191172565 20.789538452125864 12 21.369410721014727 26.891459146484753 31.608652788573448 20.130477343927073 13 31.808988732797804 21.00127647681276 27.65011464652855 19.539620143860883 14 20.154672002469525 23.299803800786187 28.623984415302704 27.921539781441584 15 21.51402247322249 29.715420757626532 26.898759258976007 21.871797510174968 16 21.228831411897374 28.883451270706246 27.689917640826124 22.197799676570256 17 21.002180300264055 26.600149895643156 27.44943107789985 24.948238726192944 18 23.021460940226678 24.97803013764536 31.125663441175693 20.874845480952267 19 21.916953920299456 24.216802217009402 32.491584013170794 21.37465984952035 20 23.397868645252075 23.629595073188842 32.5419895518009 20.430546729758177 21 22.414369680477552 24.50376616279668 33.163681036532545 19.918183120193223 22 20.213003377518714 25.019188867119873 32.566392784985965 22.20141497037545 23 21.95359353251748 25.28519106132512 33.70486270921775 19.056352696939655 24 21.548506814133574 25.00816917350212 30.867065646783015 22.57625836558129 25 21.402469801867994 25.908029706591094 31.98022851437844 20.709271977162466 26 21.239816343074697 26.5352136569114 31.795500905909197 20.429469094104707 27 19.46873952781482 26.92385774096976 31.619463907548596 21.987938823666823 28 20.731519939040584 25.854634598083614 31.483959914734687 21.92988554814111 29 20.6514620387198 26.02646534115164 30.49663708151236 22.825435538616205 30 20.930152523683653 26.418203282408676 32.65590606910495 19.995738124802724 31 22.4318204255757 25.82300077728817 32.20023999988876 19.544938797247372 32 21.629259963263053 25.92940860745835 30.686718105808524 21.75461332347007 33 21.120894034348073 26.029107286624665 31.516115172136654 21.33388350689061 34 19.98398841993584 27.166847199607325 32.23743581115374 20.611728569303096 35 19.33194932470483 29.977251458979627 30.596857197285193 20.09394201903035 36 22.37731291897431 26.89928069558253 30.28799291402414 20.435413471419018 37 21.441403735154697 28.024436605127878 30.03241945194927 20.501740207768155 38 21.19292181092848 26.143892864939577 31.512777977854935 21.15040734627701 39 20.812655475014843 25.646789966725393 32.300877264946806 21.23967729331296 40 18.847847579213173 26.687229808931722 31.763693272911574 22.701229338943527 41 21.393709666878486 25.42684800609594 31.71537348070754 21.464068846318032 42 19.325935422509655 28.20770419109887 31.07345025564299 21.39291013074849 43 19.854289754674507 28.44169017766388 29.70071624532271 22.0033038223389 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 209.0 1 306.0 2 403.0 3 1131.0 4 1859.0 5 1859.0 6 3218.0 7 4577.0 8 5127.0 9 5677.0 10 8726.5 11 11776.0 12 11776.0 13 22219.5 14 32663.0 15 54801.5 16 76940.0 17 75235.5 18 73531.0 19 73531.0 20 77656.5 21 81782.0 22 66516.0 23 51250.0 24 56361.5 25 61473.0 26 61473.0 27 66440.0 28 71407.0 29 74573.0 30 77739.0 31 83310.5 32 88882.0 33 88882.0 34 97262.0 35 105642.0 36 116278.0 37 126914.0 38 132228.0 39 137542.0 40 137542.0 41 142024.5 42 146507.0 43 152643.0 44 158779.0 45 172881.0 46 186983.0 47 186983.0 48 261607.0 49 336231.0 50 310400.5 51 284570.0 52 255644.0 53 226718.0 54 226718.0 55 193919.5 56 161121.0 57 132096.0 58 103071.0 59 90256.5 60 77442.0 61 77442.0 62 68168.0 63 58894.0 64 51503.0 65 44112.0 66 37255.5 67 30399.0 68 30399.0 69 25518.0 70 20637.0 71 16850.5 72 13064.0 73 10602.0 74 8140.0 75 8140.0 76 6384.5 77 4629.0 78 3608.5 79 2588.0 80 1953.5 81 1319.0 82 1319.0 83 984.0 84 649.0 85 473.5 86 298.0 87 232.0 88 166.0 89 166.0 90 114.0 91 62.0 92 39.0 93 16.0 94 11.0 95 6.0 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2876668.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.83109448678407 #Duplication Level Percentage of deduplicated Percentage of total 1 72.76554969469777 29.710970349669864 2 14.195136168441453 11.592058922927977 3 5.308243075595847 6.502241237354138 4 2.5672662956379693 4.192971707597201 5 1.3670588086763449 2.7909253693027147 6 0.8542709747778163 2.092849133308208 7 0.5285804165280731 1.5107761851785 8 0.35973034513056906 1.1750546969431765 9 0.27199840508349205 0.9995393320396766 >10 1.5143626264192012 11.620707108698468 >50 0.1502838748924596 4.285243426000809 >100 0.10244577773176106 7.819124608848534 >500 0.0071941878211624994 2.0004840315190777 >1k 0.006594672169397443 6.003725133434071 >5k 4.282254655452885E-4 1.0931568511218297 >10k+ 8.56450931090577E-4 6.610171906055784 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37896 1.317357442708022 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36430 1.2663957050309596 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32742 1.1381918247083085 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 14492 0.5037772867776191 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12836 0.4462106854179905 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 12605 0.43818056167760755 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10810 0.3757819810975754 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 10590 0.36813424420197255 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 10532 0.3661180226567682 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 10092 0.3508225488655625 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 8057 0.2800809825812363 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 6208 0.215805230217738 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6083 0.21145992516341822 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5676 0.197311611906553 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5236 0.18201613811534734 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4944 0.1718655055084563 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4811 0.16724210093066005 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4699 0.16334870760198952 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4693 0.16314013295938218 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4632 0.1610196240928741 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 4056 0.14099645840256853 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4054 0.1409269335216994 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3673 0.1276824437161327 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3649 0.12684814514570328 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 3119 0.1084240517153874 No Hit CGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAG 3074 0.10685974189583226 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3041 0.10571258136149184 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 2990 0.10393969689932936 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2951 0.10258396172238159 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2936 0.10206252511586321 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2928 0.10178442559238676 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 2897 0.10070678993891545 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.4762440434558314E-5 0.0 3.4762440434558314E-5 0.0 3 0.0 3.4762440434558314E-5 0.0 3.4762440434558314E-5 0.0 4 0.0 6.952488086911663E-5 0.0 6.952488086911663E-5 0.0 5 0.0 2.780995234764665E-4 0.0 6.952488086911663E-5 0.0 6 6.952488086911663E-5 2.780995234764665E-4 0.0 6.952488086911663E-5 0.0 7 6.952488086911663E-5 2.780995234764665E-4 0.0 6.952488086911663E-5 0.0 8 6.952488086911663E-5 2.780995234764665E-4 0.0 6.952488086911663E-5 0.0 9 6.952488086911663E-5 2.780995234764665E-4 0.0 6.952488086911663E-5 0.0 10 1.0428732130367495E-4 2.780995234764665E-4 0.0 2.4333708304190822E-4 0.0 11 1.0428732130367495E-4 3.1286196391102484E-4 0.0 3.823868447801415E-4 0.0 12 1.0428732130367495E-4 3.1286196391102484E-4 0.0 6.952488086911663E-4 0.0 13 1.0428732130367495E-4 3.1286196391102484E-4 0.0 7.64773689560283E-4 0.0 14 1.3904976173823326E-4 3.1286196391102484E-4 0.0 0.0010776356534713078 0.0 15 2.085746426073499E-4 3.1286196391102484E-4 0.0 0.001320972736513216 0.0 16 2.4333708304190822E-4 3.1286196391102484E-4 0.0 0.0021552713069426157 0.0 17 2.4333708304190822E-4 3.1286196391102484E-4 0.0 0.0031633820795448067 0.0 18 2.4333708304190822E-4 3.1286196391102484E-4 0.0 0.003615293805194065 0.0 19 2.4333708304190822E-4 3.1286196391102484E-4 0.0 0.004414829935188906 0.0 20 2.4333708304190822E-4 3.1286196391102484E-4 0.0 0.006292001718655055 0.0 21 2.4333708304190822E-4 3.1286196391102484E-4 0.0 0.01258400343731011 0.0 22 2.4333708304190822E-4 3.1286196391102484E-4 0.0 0.020370790094651172 0.0 23 2.4333708304190822E-4 4.171492852146998E-4 0.0 0.025480868838531245 0.0 24 2.4333708304190822E-4 4.519117256492581E-4 0.0 0.031320958831537044 0.0 25 2.4333708304190822E-4 4.519117256492581E-4 0.0 0.03570102632629139 0.0 26 2.4333708304190822E-4 4.8667416608381644E-4 0.0 0.04355733786450157 0.0 27 2.4333708304190822E-4 4.8667416608381644E-4 0.0 0.1011587016645647 0.0 28 2.4333708304190822E-4 4.8667416608381644E-4 0.0 0.17482031294539377 0.0 29 2.4333708304190822E-4 4.8667416608381644E-4 0.0 0.26763602890566446 0.0 30 2.4333708304190822E-4 5.214366065183747E-4 0.0 0.4236498615759622 0.0 31 2.4333708304190822E-4 5.214366065183747E-4 0.0 0.6212743354464262 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9300 0.0 29.52043 1 GTATTGG 1135 0.0 22.65639 1 ACGTTTA 170 0.0 20.676472 26 ATTGGAC 1260 0.0 20.261904 3 TTGGACC 2050 0.0 18.680489 4 TCACGTT 250 0.0 17.76 24 GGACCCT 2105 0.0 17.401424 6 TATTGGA 1510 0.0 17.152319 2 TGGACCC 2195 0.0 17.109339 5 GTATCAA 16255 0.0 16.980621 2 CCGACCG 230 0.0 16.891304 9 GACCCTC 2225 0.0 15.964045 7 ATTAGAC 200 3.6379788E-12 15.724999 3 TATACTG 450 0.0 15.622222 5 TTTTTAC 2155 0.0 15.538283 1 CGACGAG 110 1.4532976E-5 15.136364 24 GACGTCG 110 1.4532976E-5 15.136364 36 GATACTG 1040 0.0 15.120193 36 TATACCG 210 9.094947E-12 14.97619 5 TCGAACC 470 0.0 14.957446 31 >>END_MODULE