##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088287_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1913996 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.931892752126963 31.0 30.0 33.0 27.0 34.0 2 30.780871015404422 31.0 31.0 34.0 27.0 34.0 3 30.79071481863076 31.0 31.0 34.0 27.0 34.0 4 34.97024131711874 35.0 35.0 37.0 32.0 37.0 5 34.84394220259603 35.0 35.0 37.0 32.0 37.0 6 34.938039577930155 35.0 35.0 37.0 32.0 37.0 7 34.578978221480085 35.0 35.0 37.0 30.0 37.0 8 34.782127548855904 35.0 35.0 37.0 32.0 37.0 9 36.2398145032696 38.0 35.0 39.0 32.0 39.0 10 36.141437599660605 38.0 35.0 39.0 31.0 39.0 11 36.22428834752006 38.0 35.0 39.0 32.0 39.0 12 35.95738183360885 37.0 35.0 39.0 30.0 39.0 13 36.12208489463928 38.0 35.0 39.0 31.0 39.0 14 37.05611140253167 39.0 36.0 40.0 31.0 41.0 15 37.097072303181406 39.0 36.0 40.0 31.0 41.0 16 37.027716881330996 39.0 36.0 40.0 31.0 41.0 17 37.080625560346 39.0 36.0 40.0 31.0 41.0 18 37.06049542423286 39.0 36.0 40.0 31.0 41.0 19 37.13658179013958 39.0 36.0 40.0 31.0 41.0 20 37.09087479806645 39.0 36.0 40.0 31.0 41.0 21 37.02062491248675 39.0 36.0 40.0 31.0 41.0 22 36.94099778682923 39.0 36.0 40.0 31.0 41.0 23 36.822448949736575 39.0 35.0 40.0 31.0 41.0 24 36.74817867957927 39.0 35.0 40.0 30.0 41.0 25 36.65126207160308 38.0 35.0 40.0 30.0 41.0 26 36.407417779347504 38.0 35.0 40.0 30.0 41.0 27 36.26302406065634 38.0 35.0 40.0 30.0 41.0 28 36.113378502358415 38.0 34.0 40.0 29.0 41.0 29 35.9545035621809 38.0 34.0 40.0 29.0 41.0 30 35.81115112048301 38.0 34.0 40.0 29.0 41.0 31 35.60616636607391 38.0 34.0 40.0 27.0 41.0 32 35.343851815782266 38.0 34.0 40.0 27.0 41.0 33 35.538766538697054 38.0 34.0 40.0 27.0 41.0 34 35.553683497771154 38.0 34.0 40.0 27.0 41.0 35 35.502291018372034 38.0 34.0 40.0 27.0 41.0 36 35.43009285285863 38.0 34.0 40.0 27.0 41.0 37 35.28476757527184 38.0 34.0 40.0 26.0 41.0 38 35.184039047103546 38.0 34.0 40.0 26.0 41.0 39 35.19516655207221 38.0 34.0 40.0 26.0 41.0 40 35.09190771558561 38.0 33.0 40.0 25.0 41.0 41 34.96809293227363 38.0 33.0 40.0 25.0 41.0 42 34.83419819059183 38.0 33.0 40.0 24.0 41.0 43 34.49618285513658 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 2.0 15 5.0 16 19.0 17 63.0 18 191.0 19 365.0 20 750.0 21 1515.0 22 2893.0 23 4985.0 24 8020.0 25 12810.0 26 19201.0 27 27741.0 28 38055.0 29 51134.0 30 65525.0 31 81594.0 32 99989.0 33 120255.0 34 144816.0 35 173093.0 36 209141.0 37 258439.0 38 309458.0 39 283936.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.628975191170724 24.4088284406028 12.961103366987183 23.00109300123929 2 18.483842181488363 23.11509532935283 34.899968442985255 23.501094046173556 3 19.829090551913378 26.34916687391196 31.02958417885931 22.79215839531535 4 13.79611033669872 16.51868655942855 35.69965663460112 33.98554646927162 5 12.26282604561347 39.486811884664334 34.638212410057285 13.61214965966491 6 32.079116152802825 36.752009931055234 15.637284508431575 15.531589407710362 7 25.372728051678266 33.900384326822 22.240589844492884 18.48629777700685 8 27.06928332138625 34.04583917625742 20.249676592845546 18.635200909510782 9 25.593000194357774 13.802588929130469 22.511645792363204 38.09276508414855 10 16.27762022491165 27.556065947891216 34.055557064905045 22.110756762292084 11 32.78543946800307 22.375438611156973 23.856423942369787 20.982697978470174 12 20.068693978461816 27.064058650070322 31.57848814731065 21.288759224157207 13 30.249018284259737 21.217808187686913 27.46066344966238 21.07251007839097 14 21.07083818356987 22.41232479064742 27.765940994652027 28.75089603113068 15 23.55532613443288 29.08036380431307 25.405643480968614 21.958666580285435 16 22.468176527014684 28.200738141563512 26.45831025770169 22.87277507372011 17 20.529405495100303 27.49039182945001 27.512387695690066 24.467814979759623 18 21.150932394843043 26.705019237239785 30.52890392665397 21.6151444412632 19 21.038340727984803 25.89979289402904 31.388414604837212 21.67345177314895 20 23.652348280769655 25.081922846233745 30.56093116182061 20.70479771117599 21 23.344562893548368 25.77293787447832 29.55408475252822 21.328414479445097 22 22.54879320541945 25.429520228882403 30.142121509135862 21.879565056562292 23 21.718436193179087 26.649010760733045 30.566208079849698 21.066344966238173 24 20.992154633552005 26.243367279764428 29.772371520107672 22.992106566575895 25 21.826116669000353 26.71891686294015 30.355758319244135 21.099208148815357 26 22.554070123448533 26.146345133427655 29.52811813608806 21.77146660703575 27 21.86253262807237 26.878269338075945 29.289455150376494 21.969742883475202 28 21.511330222215722 26.732553255074727 29.54326968290425 22.21284683980531 29 20.796699679623153 26.583023162012875 30.377336211778918 22.242940946585048 30 20.69027312491771 26.89420458558952 31.086585342916077 21.32893694657669 31 21.433273632755764 26.511027191279396 30.450847337194016 21.604851838770823 32 21.826430149279307 26.75282497978052 29.439821190848885 21.980923680091287 33 22.50527169335777 26.523148428732345 29.1948885995582 21.776691278351677 34 21.547798428000895 27.829943218272142 29.327960977974875 21.29429737575209 35 20.84555035642708 28.32346567077465 29.523311438477407 21.307672534320865 36 21.287714289894023 26.317505365737443 30.542279085222752 21.852501259145786 37 21.338707081937475 26.15972029199643 30.273051772313003 22.22852085375309 38 21.405635121494505 26.042530914380173 30.6048184008744 21.947015563250915 39 21.95333741554319 25.558308376820015 30.79849696655583 21.689857241080965 40 20.879615213406925 25.94566550818288 30.513282159419354 22.661437118990843 41 21.210336907705134 25.538088898827375 30.524097229043324 22.727476964424167 42 19.817700768444656 26.586784925360345 30.68104635537378 22.914467950821212 43 20.080344995496333 26.18150717138385 30.635330481359418 23.1028173517604 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 224.0 1 284.0 2 344.0 3 826.0 4 1308.0 5 1308.0 6 2170.5 7 3033.0 8 3318.5 9 3604.0 10 5478.5 11 7353.0 12 7353.0 13 12516.0 14 17679.0 15 27511.5 16 37344.0 17 36432.5 18 35521.0 19 35521.0 20 38589.0 21 41657.0 22 35780.0 23 29903.0 24 33940.0 25 37977.0 26 37977.0 27 42830.0 28 47683.0 29 51615.5 30 55548.0 31 60422.5 32 65297.0 33 65297.0 34 71086.0 35 76875.0 36 83526.5 37 90178.0 38 95505.0 39 100832.0 40 100832.0 41 104845.0 42 108858.0 43 118741.0 44 128624.0 45 146610.0 46 164596.0 47 164596.0 48 166610.0 49 168624.0 50 156313.0 51 144002.0 52 135915.5 53 127829.0 54 127829.0 55 115355.5 56 102882.0 57 92092.0 58 81302.0 59 73714.0 60 66126.0 61 66126.0 62 58455.5 63 50785.0 64 44632.5 65 38480.0 66 33145.5 67 27811.0 68 27811.0 69 23850.0 70 19889.0 71 16758.5 72 13628.0 73 10873.5 74 8119.0 75 8119.0 76 6347.0 77 4575.0 78 3582.0 79 2589.0 80 1984.0 81 1379.0 82 1379.0 83 1054.0 84 729.0 85 542.0 86 355.0 87 297.0 88 239.0 89 239.0 90 197.0 91 155.0 92 97.5 93 40.0 94 29.5 95 19.0 96 19.0 97 9.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1913996.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.27170499782323 #Duplication Level Percentage of deduplicated Percentage of total 1 76.1132457725646 38.26342637905184 2 13.083880408852156 13.154979522812289 3 4.529576019499476 6.831285282524761 4 2.088535289144428 4.199769197336486 5 1.1155591449932198 2.804053012236153 6 0.6532543787232767 1.9704126849427719 7 0.42680404713555264 1.5019317004632882 8 0.30423389340321866 1.2235485231604646 9 0.2192926140140859 0.992179223992588 >10 1.2753803183896182 11.89354320607408 >50 0.12120396373832303 4.196471811273468 >100 0.06094427335345097 5.4964662930920225 >500 0.004937976374883648 1.762613124642783 >1k 0.0026265831781295997 2.6517366215934186 >5k 2.1012665425036798E-4 0.6529781271712432 >10k+ 3.15189981375552E-4 2.4046052896323857 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 16283 0.8507332303724772 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 15562 0.8130633501846399 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 13682 0.7148395294452026 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6321 0.3302514738797782 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6042 0.31567464090834046 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 3783 0.1976493158815379 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 3734 0.19508922693673342 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3456 0.1805646406784549 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3312 0.1730411139835193 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3007 0.15710586646994038 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2800 0.1462907968459704 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 2681 0.14007343798001667 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2517 0.13150497702189554 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2143 0.11196470630032665 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2076 0.1084641765186552 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2067 0.10799395610022174 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1954 0.10209007751322363 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 5.224671315927515E-5 0.0 4 0.0 0.0 0.0 5.224671315927515E-5 0.0 5 5.224671315927515E-5 0.0 0.0 5.224671315927515E-5 0.0 6 2.089868526371006E-4 0.0 0.0 5.224671315927515E-5 0.0 7 2.089868526371006E-4 0.0 0.0 5.224671315927515E-5 0.0 8 2.089868526371006E-4 0.0 0.0 5.224671315927515E-5 0.0 9 2.089868526371006E-4 0.0 0.0 1.5674013947782544E-4 0.0 10 2.089868526371006E-4 0.0 0.0 3.6572699211492605E-4 0.0 11 2.089868526371006E-4 0.0 0.0 4.179737052742012E-4 0.0 12 2.089868526371006E-4 0.0 0.0 5.747138447520266E-4 0.0 13 2.089868526371006E-4 0.0 0.0 7.314539842298521E-4 0.0 14 2.089868526371006E-4 0.0 0.0 0.001044934263185503 0.0 15 2.089868526371006E-4 0.0 0.0 0.0016196481079375296 0.0 16 2.089868526371006E-4 0.0 0.0 0.0022466086658488316 0.0 17 2.089868526371006E-4 0.0 0.0 0.0033960363553528846 0.0 18 2.089868526371006E-4 0.0 0.0 0.0040229969132641865 0.0 19 2.089868526371006E-4 0.0 0.0 0.004754450897494039 0.0 20 2.089868526371006E-4 0.0 0.0 0.006112865439635192 0.0 21 2.089868526371006E-4 0.0 0.0 0.00830722739232475 0.0 22 2.089868526371006E-4 0.0 0.0 0.01389762570036719 0.0 23 2.089868526371006E-4 0.0 0.0 0.02476494203749642 0.0 24 2.089868526371006E-4 0.0 0.0 0.039446268435252736 0.0 25 2.089868526371006E-4 0.0 0.0 0.046238341145958504 0.0 26 2.089868526371006E-4 0.0 0.0 0.05637420349885789 0.0 27 2.089868526371006E-4 0.0 0.0 0.12283202263745588 0.0 28 2.089868526371006E-4 0.0 0.0 0.19127521687610632 0.0 29 2.089868526371006E-4 0.0 0.0 0.271526168288753 0.0 30 2.089868526371006E-4 0.0 0.0 0.4131147609503886 0.0 31 2.089868526371006E-4 0.0 0.0 0.6337526306220076 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGCGC 60 4.3259206E-8 27.750002 35 GGTATCA 4405 0.0 25.534618 1 ACGCGCG 125 1.6592821E-7 16.28 21 CCCGTAT 80 3.3840365E-4 16.1875 1 GTATCAA 7205 0.0 15.9965315 2 ACCGTCA 70 0.0025933394 15.857142 8 GTTGCGT 70 0.0025933394 15.857142 13 ACGGACC 130 2.591387E-7 15.653846 8 CGGTATA 95 7.063597E-5 15.578948 26 TTAGACT 180 2.0190782E-10 15.416667 4 GAACCGT 85 5.3664664E-4 15.235294 6 TCTATAC 210 9.094947E-12 14.97619 3 GTATTGG 495 0.0 14.949495 1 TTGGACC 685 0.0 14.854015 4 TAGACTA 125 2.961051E-6 14.800001 5 GACGCGA 75 0.0041057332 14.8 33 CGGTACT 100 1.0939677E-4 14.799999 4 ATTGGAC 500 0.0 14.430001 3 CGTCTGT 430 0.0 14.197674 34 CTATGCG 120 3.3026135E-5 13.875001 34 >>END_MODULE