##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088281_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 504696 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.883012744305482 31.0 30.0 33.0 27.0 34.0 2 30.791846973227447 31.0 31.0 34.0 27.0 34.0 3 30.704267519457257 31.0 31.0 34.0 27.0 34.0 4 34.962668616355195 35.0 35.0 37.0 32.0 37.0 5 34.91540650213198 35.0 35.0 37.0 32.0 37.0 6 35.04360248545659 36.0 35.0 37.0 32.0 37.0 7 34.58646591215306 35.0 35.0 37.0 30.0 37.0 8 34.87094409307781 35.0 35.0 37.0 32.0 37.0 9 36.28599394486978 38.0 35.0 39.0 32.0 39.0 10 36.23612828316452 38.0 35.0 39.0 32.0 39.0 11 36.33477776721036 38.0 35.0 39.0 32.0 39.0 12 36.08400898758857 38.0 35.0 39.0 31.0 39.0 13 36.24143048488595 38.0 35.0 39.0 32.0 39.0 14 37.13048845245455 39.0 36.0 40.0 31.0 41.0 15 37.17836479781889 39.0 36.0 40.0 32.0 41.0 16 37.11066463772251 39.0 36.0 40.0 31.0 41.0 17 37.219419214735204 39.0 36.0 40.0 32.0 41.0 18 37.22744384738536 39.0 36.0 40.0 32.0 41.0 19 37.322063182589126 39.0 36.0 40.0 32.0 41.0 20 37.28717683516414 39.0 36.0 40.0 31.0 41.0 21 37.22332651734906 39.0 36.0 40.0 31.0 41.0 22 37.14908776768589 39.0 36.0 40.0 31.0 41.0 23 37.00756296859892 39.0 36.0 40.0 31.0 41.0 24 36.92870361564189 39.0 35.0 40.0 31.0 41.0 25 36.847535942428706 39.0 35.0 40.0 31.0 41.0 26 36.5886236467101 38.0 35.0 40.0 30.0 41.0 27 36.4301856959437 38.0 35.0 40.0 30.0 41.0 28 36.272718626658424 38.0 35.0 40.0 30.0 41.0 29 36.10426870829173 38.0 35.0 40.0 30.0 41.0 30 35.917447334633124 38.0 34.0 40.0 29.0 41.0 31 35.645652036077166 38.0 34.0 40.0 29.0 41.0 32 35.3468404742657 38.0 34.0 40.0 27.0 41.0 33 35.465177057079906 38.0 34.0 40.0 28.0 41.0 34 35.43680155975082 38.0 34.0 40.0 27.0 41.0 35 35.33982833230301 38.0 34.0 40.0 27.0 41.0 36 35.237943237116994 38.0 34.0 40.0 26.0 41.0 37 35.07371566249782 38.0 34.0 40.0 25.0 41.0 38 34.92014995165407 38.0 33.0 40.0 25.0 41.0 39 34.85298080428615 38.0 33.0 40.0 24.0 41.0 40 34.673952240556694 38.0 33.0 40.0 24.0 41.0 41 34.48823648295211 38.0 33.0 40.0 23.0 41.0 42 34.26337636914103 38.0 33.0 40.0 22.0 41.0 43 33.908103095724954 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 1.0 16 7.0 17 15.0 18 40.0 19 90.0 20 197.0 21 389.0 22 665.0 23 1288.0 24 2021.0 25 3375.0 26 4988.0 27 7105.0 28 10058.0 29 13410.0 30 17513.0 31 21537.0 32 26230.0 33 31900.0 34 38477.0 35 46027.0 36 55691.0 37 70224.0 38 79461.0 39 73986.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.01120674623932 25.62275112146718 13.866367080381062 21.49967505191244 2 17.76475343573161 23.28589883811245 36.11401715091857 22.83533057523737 3 19.87493461410433 26.6451487628196 32.335703076703595 21.14421354637247 4 13.088671200088767 16.04153787626611 35.318686892703724 35.5511040309414 5 10.981263968804985 41.07759918842234 34.49462646821056 13.446510374562113 6 31.29527477927307 36.07062469288443 15.452866676177344 17.181233851665162 7 23.72913595510961 35.874070727725204 21.76022793919508 18.636565377970104 8 27.716684895461825 33.66184792429502 20.329267519457257 18.292199660785897 9 24.93144387908761 13.878849842281294 24.37625818314391 36.81344809548718 10 16.35994737426094 28.364599679807252 33.72069523039612 21.55475771553569 11 30.765847163440963 22.187613929969725 25.31464485551698 21.731894051072327 12 19.82896634805903 28.19578518553743 31.773780652115335 20.201467814288204 13 30.630914451471774 21.34908935279852 29.30793982912486 18.71205636660485 14 20.587442737806523 23.331272686924407 29.04639624645331 27.034888328815764 15 22.768161427869448 29.48765197267266 27.427203702823082 20.316982896634805 16 21.376036267376797 28.658836210312742 27.83437950766402 22.13074801464644 17 18.940708862364673 27.76780477752944 28.48586079540951 24.80562556469637 18 19.878104839348836 26.81257628354495 33.11934312932934 20.189975747776877 19 19.176890643080192 25.578962385277475 34.70009669186996 20.544050279772378 20 23.63363291961894 24.28610490275334 33.281222755876804 18.799039421750916 21 22.96372469763977 25.24846640353797 31.806473599949275 19.981335298872985 22 21.149761440550353 24.994055827666557 32.72009288759967 21.136089844183427 23 20.26546673641162 27.09888725093918 33.6834450837732 18.952200928876 24 18.911582417930795 26.283941224023966 32.24257771014631 22.561898647898936 25 20.006895239906797 27.165660120151536 33.492637151869644 19.334807488072027 26 21.457075150189418 26.11096580912074 31.906533834228924 20.525425206460916 27 20.191758999476914 27.511610949957994 31.638847940146146 20.657782110418946 28 19.85868720972625 27.18884239225197 31.61744891974575 21.33502147827603 29 18.866406708196617 27.029736712793444 32.72980170241095 21.374054876598983 30 18.26406391174093 27.11315326453945 34.85840981501735 19.764373008702268 31 19.76675067763565 26.52150997828396 33.443498660579834 20.26824068350056 32 20.83036124716661 27.04043622299364 31.355112780763072 20.774089749076673 33 21.616973385959074 26.976041022714664 30.87442737806521 20.53255821326105 34 19.91515684689397 29.548084391396007 30.986375957011745 19.550382804698273 35 18.629828649325532 30.2423637199423 31.130026788403313 19.997780842328847 36 19.68630621205637 26.782657282799942 33.26041815270975 20.270618352433942 37 19.795877122069523 26.91501418675797 32.373745779637645 20.915362911534867 38 19.99520503431769 26.684974717453674 32.89445527604736 20.425364972181274 39 21.020376622759045 26.037059933108246 32.76863696165613 20.17392648247658 40 19.29220758634901 26.842495284289946 32.01531218793095 21.84998494143009 41 20.175907873254395 26.24688921647883 31.835600044383156 21.74160286588362 42 17.73523071314217 27.915616529554427 32.377906700271055 21.97124605703235 43 18.410686829299223 27.68953984180576 31.92357379491813 21.97619953397689 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 35.0 1 61.0 2 87.0 3 247.0 4 407.0 5 407.0 6 712.0 7 1017.0 8 1146.0 9 1275.0 10 1952.5 11 2630.0 12 2630.0 13 4702.5 14 6775.0 15 10875.5 16 14976.0 17 14361.5 18 13747.0 19 13747.0 20 14892.0 21 16037.0 22 13079.5 23 10122.0 24 11004.0 25 11886.0 26 11886.0 27 12803.0 28 13720.0 29 14227.0 30 14734.0 31 15738.0 32 16742.0 33 16742.0 34 18057.5 35 19373.0 36 20685.5 37 21998.0 38 22891.0 39 23784.0 40 23784.0 41 24668.5 42 25553.0 43 29372.0 44 33191.0 45 41655.5 46 50120.0 47 50120.0 48 50999.5 49 51879.0 50 46524.0 51 41169.0 52 38051.5 53 34934.0 54 34934.0 55 30102.0 56 25270.0 57 20540.5 58 15811.0 59 13709.0 60 11607.0 61 11607.0 62 9997.5 63 8388.0 64 7379.0 65 6370.0 66 5204.5 67 4039.0 68 4039.0 69 3389.5 70 2740.0 71 2229.5 72 1719.0 73 1430.5 74 1142.0 75 1142.0 76 907.0 77 672.0 78 494.0 79 316.0 80 251.0 81 186.0 82 186.0 83 152.5 84 119.0 85 94.0 86 69.0 87 51.0 88 33.0 89 33.0 90 24.5 91 16.0 92 11.5 93 7.0 94 4.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 504696.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.57367745293625 #Duplication Level Percentage of deduplicated Percentage of total 1 83.8417111093549 47.432339214029064 2 9.565062967248265 10.822615742522574 3 2.7416615948339818 4.653176362537215 4 1.1503913100504544 2.6032746767782076 5 0.6369717878749329 1.8017918236928294 6 0.37720935684387624 1.2804072291788993 7 0.27163449233134435 1.0757153507971895 8 0.1791371098836844 0.8107556059528608 9 0.16085454170900843 0.819011966353679 >10 0.9392720800470109 9.786786829862082 >50 0.07034450996422797 2.770754659084801 >100 0.05549792988043859 6.496824720124553 >500 0.004948859989338473 1.9058312427366946 >1k 0.004241879990861548 3.9688485669834668 >5k 0.001060469997715387 3.7718660093658753 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 6877 1.3626024379032131 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 6445 1.2770063563016152 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 5539 1.0974923518315975 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2901 0.5748014646440629 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2444 0.48425190609792823 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 1958 0.3879563142961307 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1721 0.34099735286192084 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 1698 0.3364401540729469 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1660 0.3289108691172508 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 1394 0.27620587442737804 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 1375 0.27244123194953 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 1307 0.2589677746603896 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 1172 0.2322189991598903 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1118 0.2215194889596906 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1098 0.21755670740406108 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 968 0.19179862729246913 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 878 0.17396611029213627 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 840 0.16643682533644016 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 755 0.14959500372501466 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 721 0.14285827508044446 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 717 0.14206571876931856 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 671 0.13295132119137065 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 619 0.12264808914673388 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 615 0.12185553283560796 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 610 0.1208648374467006 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 584 0.1157132214243822 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 540 0.10699510200199724 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 508 0.10065465151299 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 3.962781555629527E-4 0.0 12 0.0 0.0 0.0 7.925563111259055E-4 0.0 13 0.0 0.0 0.0 0.0011888344666888583 0.0 14 0.0 0.0 0.0 0.0011888344666888583 0.0 15 0.0 0.0 0.0 0.0017832517000332874 0.0 16 0.0 0.0 0.0 0.003170225244503622 0.0 17 0.0 0.0 0.0 0.00435905971119248 0.0 18 0.0 0.0 0.0 0.00435905971119248 0.0 19 0.0 0.0 0.0 0.005349755100099862 0.0 20 0.0 0.0 0.0 0.007331145877914626 0.0 21 0.0 0.0 0.0 0.009708814811292342 0.0 22 0.0 0.0 0.0 0.014860430833610728 0.0 23 0.0 0.0 0.0 0.026946914578280787 0.0 24 0.0 0.0 0.0 0.04438315342305071 0.0 25 0.0 0.0 0.0 0.04973290852315057 0.0 26 0.0 0.0 0.0 0.05944172333444291 0.0 27 0.0 0.0 0.0 0.13433829473584097 0.0 28 0.0 0.0 0.0 0.20982928337058349 0.0 29 0.0 0.0 0.0 0.29324583511658503 0.0 30 0.0 0.0 0.0 0.4577012696752104 0.0 31 0.0 0.0 0.0 0.6788244804793381 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1550 0.0 29.480646 1 ATTGGAC 125 0.0 23.68 3 CGTCTGT 205 0.0 22.560974 34 GGACCCT 240 0.0 21.583332 6 TTGGACC 225 0.0 21.377777 4 AGTATCA 105 9.786163E-10 21.142859 1 GTATTGG 125 1.8189894E-11 20.72 1 GGACTAC 45 0.0038228792 20.555555 1 CGCCGGA 55 5.1376E-4 20.181818 14 TGGACCC 240 0.0 20.041666 5 ACCGACC 75 9.248888E-6 19.733334 8 GACCCTC 275 0.0 18.836363 7 CACATTA 60 9.227031E-4 18.5 27 ACCGCCG 80 1.6137436E-5 18.5 12 GGGTAGG 60 9.227031E-4 18.5 1 CGACCGC 80 1.6137436E-5 18.5 10 GCCGGAA 60 9.227031E-4 18.5 15 CCGACCG 90 2.1473516E-6 18.5 9 CTACAGT 70 1.21747864E-4 18.5 4 TATACCG 60 9.227031E-4 18.5 5 >>END_MODULE