##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088279_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2384498 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.73668671561058 31.0 30.0 31.0 27.0 34.0 2 30.636123410462076 31.0 30.0 34.0 27.0 34.0 3 30.605953957604495 31.0 30.0 34.0 27.0 34.0 4 34.84610765033143 35.0 35.0 37.0 32.0 37.0 5 34.77503944226416 35.0 35.0 37.0 32.0 37.0 6 34.89898544683199 35.0 35.0 37.0 32.0 37.0 7 34.469932874760225 35.0 35.0 37.0 30.0 37.0 8 34.73310189398356 35.0 35.0 37.0 31.0 37.0 9 36.11760336976588 38.0 35.0 39.0 31.0 39.0 10 36.053058547333656 37.0 35.0 39.0 31.0 39.0 11 36.15866987516869 38.0 35.0 39.0 31.0 39.0 12 35.889502109039306 37.0 35.0 39.0 30.0 39.0 13 36.06375807402648 37.0 35.0 39.0 31.0 39.0 14 36.92962711648322 38.0 36.0 40.0 31.0 41.0 15 36.97174667372336 38.0 36.0 40.0 31.0 41.0 16 36.892303537264446 38.0 36.0 40.0 31.0 41.0 17 37.00157727119083 38.0 36.0 40.0 31.0 41.0 18 37.01087901939947 38.0 36.0 40.0 31.0 41.0 19 37.105106819129226 39.0 36.0 40.0 31.0 41.0 20 37.06425880835295 39.0 36.0 40.0 31.0 41.0 21 37.00517719033524 39.0 36.0 40.0 31.0 41.0 22 36.92053379788953 39.0 36.0 40.0 31.0 41.0 23 36.796506853853515 39.0 35.0 40.0 31.0 41.0 24 36.711351823318786 38.0 35.0 40.0 30.0 41.0 25 36.63043290453588 38.0 35.0 40.0 30.0 41.0 26 36.36567571035916 38.0 35.0 40.0 30.0 41.0 27 36.200985280759305 38.0 35.0 40.0 30.0 41.0 28 36.04700024910904 38.0 34.0 40.0 29.0 41.0 29 35.872960681870985 38.0 34.0 40.0 29.0 41.0 30 35.702383897994466 38.0 34.0 40.0 29.0 41.0 31 35.43040002549803 38.0 34.0 40.0 27.0 41.0 32 35.1738797851791 37.0 34.0 40.0 27.0 41.0 33 35.2944510752368 38.0 34.0 40.0 27.0 41.0 34 35.275928098912225 38.0 34.0 40.0 27.0 41.0 35 35.17765458389984 38.0 33.0 40.0 26.0 41.0 36 35.08039847380874 38.0 33.0 40.0 26.0 41.0 37 34.92604061735426 38.0 33.0 40.0 25.0 41.0 38 34.78595914108546 38.0 33.0 40.0 25.0 41.0 39 34.72570704609524 38.0 33.0 40.0 24.0 41.0 40 34.557793715910016 38.0 33.0 40.0 24.0 41.0 41 34.390054007174676 38.0 33.0 40.0 23.0 41.0 42 34.17426309437039 38.0 33.0 40.0 22.0 41.0 43 33.81690318045979 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 7.0 15 9.0 16 24.0 17 93.0 18 240.0 19 508.0 20 1154.0 21 2153.0 22 3982.0 23 6921.0 24 10858.0 25 17256.0 26 25878.0 27 37161.0 28 51461.0 29 68306.0 30 87262.0 31 106918.0 32 129124.0 33 155366.0 34 186529.0 35 220422.0 36 265471.0 37 326081.0 38 368948.0 39 312364.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.67560383778892 25.91518214735345 13.886109361383403 21.52310465347423 2 18.085483820913247 23.51853513821358 35.767570364915386 22.62841067595779 3 20.101337891665246 26.591173488088476 32.49715453734916 20.810334082897114 4 13.167593346691842 16.195861770485863 35.35079501010275 35.28574987271954 5 11.029323572508764 40.92593074097777 34.68151367709262 13.36323200942085 6 31.5533500132942 36.18975566345621 15.187934735109865 17.068959588139727 7 23.885237060379165 35.8799629943074 21.396201632377128 18.83859831293631 8 27.775238226243008 33.75851017698484 20.175147976639106 18.291103620133043 9 24.91652331014746 13.7146686640123 24.269636627919166 37.09917139792107 10 16.3015024546047 28.374441916076254 33.78136614079777 21.542689488521276 11 31.20501673727552 21.762358366415068 25.298784062725154 21.73384083358426 12 20.00312015359208 27.885282352931306 31.889018149732145 20.22257934374447 13 31.153391615342095 20.986849223610168 29.201827806104262 18.65793135494347 14 20.6771823671062 22.932122400605913 28.897864456166456 27.49283077612143 15 22.976156826300546 29.213863882460796 27.11484765346836 20.6951316377703 16 21.55225124952925 28.56886438990513 27.579977001448526 22.2989073591171 17 19.08942678920259 27.4059781136323 28.400946446589597 25.10364865057551 18 20.166508841693304 26.473874165547635 33.03663915843083 20.32297783432823 19 19.430882307303257 24.985720264810453 34.55280734141945 21.030590086466837 20 23.97326397422015 23.810546286891412 33.162703428562324 19.053486310326115 21 23.32302228812941 24.714300452338396 31.808288369291986 20.15438889024021 22 21.570326332838192 24.59352031329026 32.60011121837804 21.23604213549351 23 20.70641283825778 26.69106872809287 33.49799412706574 19.10452430658361 24 19.216371747847973 25.657937226200232 32.07949849402264 23.04619253192915 25 20.458226427533173 26.638940355580083 33.225945251369474 19.67688796551727 26 21.834281261716303 25.48364477554605 31.830515269880706 20.851558692856944 27 20.5839971348267 27.019355856033428 31.4513159583275 20.94533105081237 28 20.279572471857808 26.62199758607472 31.45630652657289 21.64212341549458 29 19.28703651670079 26.491404060728925 32.46393999911093 21.757619423459364 30 18.672903059679648 26.704362930897823 34.55414934296443 20.068584666458097 31 20.253655067020397 26.035249348080814 33.22569362607979 20.485401958819004 32 21.3301080562869 26.50364982482686 31.066413140208127 21.09982897867811 33 22.330821833358634 26.37775330488849 30.485787784263184 20.805637077489685 34 20.403162426640744 29.304197361457213 30.605309796862905 19.68733041503914 35 18.98470873114593 30.296859129259072 30.77364711566124 19.944785023933758 36 20.15359207682288 26.514301962090137 33.091325721388735 20.24078023969825 37 20.18982611853732 26.90935366689341 32.05265846312306 20.848161751446217 38 20.554892476319964 26.4644382171845 32.51233592982674 20.4683333766688 39 21.620106202647264 25.81298034219362 32.44284541232578 20.124068042833336 40 19.7274227111954 26.798261101498095 31.463561722425432 22.010754464881078 41 20.767809408940582 26.14420309851382 31.439699257453768 21.64828823509183 42 18.24849507107995 27.839067174726082 31.9191712469459 21.993266507248066 43 18.86166396449064 27.69325031935443 31.472704107950605 21.972381608204326 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 284.0 1 347.0 2 410.0 3 1013.0 4 1616.0 5 1616.0 6 2874.0 7 4132.0 8 4684.0 9 5236.0 10 7870.5 11 10505.0 12 10505.0 13 19514.5 14 28524.0 15 47686.0 16 66848.0 17 64321.5 18 61795.0 19 61795.0 20 67046.5 21 72298.0 22 59258.0 23 46218.0 24 50203.5 25 54189.0 26 54189.0 27 58685.0 28 63181.0 29 65577.5 30 67974.0 31 72980.5 32 77987.0 33 77987.0 34 84664.5 35 91342.0 36 98349.0 37 105356.0 38 108377.5 39 111399.0 40 111399.0 41 116296.5 42 121194.0 43 137836.0 44 154478.0 45 195184.0 46 235890.0 47 235890.0 48 241298.5 49 246707.0 50 223419.5 51 200132.0 52 184811.5 53 169491.0 54 169491.0 55 145651.5 56 121812.0 57 98735.0 58 75658.0 59 65720.0 60 55782.0 61 55782.0 62 48930.5 63 42079.0 64 36477.0 65 30875.0 66 26457.5 67 22040.0 68 22040.0 69 18486.0 70 14932.0 71 12383.5 72 9835.0 73 8005.5 74 6176.0 75 6176.0 76 4855.0 77 3534.0 78 2834.5 79 2135.0 80 1710.0 81 1285.0 82 1285.0 83 950.5 84 616.0 85 445.5 86 275.0 87 214.0 88 153.0 89 153.0 90 122.5 91 92.0 92 55.5 93 19.0 94 13.5 95 8.0 96 8.0 97 7.0 98 6.0 99 3.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2384498.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.68899407493574 #Duplication Level Percentage of deduplicated Percentage of total 1 72.39354145565487 29.456203793527564 2 14.04958290020146 11.433267907632315 3 5.538329943466038 6.7604722276418645 4 2.624836779485899 4.272078726727007 5 1.4594726558993676 2.969223712421005 6 0.8878682548696875 2.167587969702975 7 0.5795585868157472 1.650715913351685 8 0.4157047677454311 1.3531687065373108 9 0.27480551151377614 1.006340384676935 >10 1.5320290128553233 11.586308756333413 >50 0.1352531638053744 3.9036052268793213 >100 0.09187849750427299 7.179784973766863 >500 0.008046720756524297 2.2768808409260703 >1k 0.007419703554717205 5.719947162705192 >5k 0.0011495315366463275 3.4021609607136862 >10k+ 5.225143348392397E-4 4.8622527364568535 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 32391 1.3583991263569941 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 30120 1.263158954211746 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 25508 1.0697429815416075 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 15516 0.6507029991218277 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10814 0.45351264710643496 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9772 0.4098137217980472 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 9755 0.40910078347727696 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9239 0.3874610085644861 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8959 0.3757184950459174 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7095 0.29754690505087444 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6766 0.28374945166655624 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6408 0.26873580938210057 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6291 0.2638291162332701 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5479 0.22977582702942084 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5181 0.21727843764180133 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5066 0.21245561958953205 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4690 0.19668710143602555 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3893 0.16326287545638538 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3851 0.16150149842860007 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3833 0.16074662255954922 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3381 0.1417908507367169 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3309 0.13877134726051354 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3166 0.13277427785638737 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3055 0.12811920999724052 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3034 0.12723852148334786 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2786 0.11683800950975845 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2637 0.11058931481594868 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2484 0.1041728699290165 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2406 0.10090174116312951 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.258126448418074E-4 0.0 10 0.0 0.0 0.0 2.516252896836148E-4 0.0 11 0.0 0.0 0.0 3.774379345254221E-4 0.0 12 0.0 0.0 0.0 4.193754828060246E-4 0.0 13 0.0 0.0 0.0 4.61313031086627E-4 0.0 14 0.0 0.0 0.0 5.032505793672295E-4 0.0 15 0.0 0.0 0.0 7.968134173314467E-4 0.0 16 0.0 0.0 0.0 0.0017194394795047008 0.0 17 0.0 0.0 0.0 0.0026840030899585574 0.0 18 0.0 0.0 0.0 0.0031872536693257868 0.0 19 0.0 0.0 0.0 0.0038163168935348235 0.0 20 0.0 0.0 0.0 0.004571192762585668 0.0 21 0.0 0.0 0.0 0.006500319983493381 0.0 22 0.0 0.0 0.0 0.009477885911416156 0.0 23 0.0 0.0 0.0 0.015307205122419898 0.0 24 0.0 0.0 0.0 0.0238624649716628 0.0 25 0.0 0.0 0.0 0.028853033217054493 0.0 26 0.0 0.0 0.0 0.0357727286833539 0.0 27 0.0 0.0 0.0 0.08890760235487721 0.0 28 0.0 0.0 0.0 0.14766210749600125 0.0 29 0.0 0.0 0.0 0.21673324951415351 0.0 30 0.0 0.0 0.0 0.34732677485994956 0.0 31 0.0 0.0 0.0 0.5234644776384799 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7035 0.0 30.32054 1 AGTATCA 430 0.0 21.511627 1 GTATTGG 880 0.0 21.022728 1 ATTGGAC 890 0.0 20.578651 3 TTGGACC 1495 0.0 18.685617 4 GTATCAA 12165 0.0 18.355528 2 TGGACCC 1585 0.0 17.858044 5 CGTCTGT 695 0.0 17.834534 34 ACGTTTA 135 1.1532393E-9 17.814814 26 GGACCCT 1570 0.0 17.792994 6 TGCGACG 105 4.802605E-7 17.619047 22 CAATGCG 105 4.802605E-7 17.619047 19 ATCACGT 130 1.3951649E-8 17.076923 23 CGATCTG 260 0.0 17.076923 33 TATTGGA 1085 0.0 17.050694 2 GACCCTC 1695 0.0 16.480827 7 CGAATTA 135 2.2226232E-8 16.444443 15 CGCTTAT 80 3.3844722E-4 16.1875 1 TATACGG 95 7.0647606E-5 15.578948 2 CTAGTAC 235 0.0 14.957447 3 >>END_MODULE