##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088278_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2963174 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.87182257943678 31.0 30.0 33.0 27.0 34.0 2 30.721109188998014 31.0 31.0 34.0 27.0 34.0 3 30.688749968783473 31.0 31.0 34.0 27.0 34.0 4 34.89959347645464 35.0 35.0 37.0 32.0 37.0 5 34.81473885772486 35.0 35.0 37.0 32.0 37.0 6 34.93824189872076 35.0 35.0 37.0 32.0 37.0 7 34.5171515408815 35.0 35.0 37.0 30.0 37.0 8 34.77102694610576 35.0 35.0 37.0 32.0 37.0 9 36.21169833428614 38.0 35.0 39.0 32.0 39.0 10 36.12589507062359 38.0 35.0 39.0 31.0 39.0 11 36.22134069750882 38.0 35.0 39.0 32.0 39.0 12 35.948623334303015 37.0 35.0 39.0 30.0 39.0 13 36.12943958066587 38.0 35.0 39.0 31.0 39.0 14 37.02883563368199 39.0 36.0 40.0 31.0 41.0 15 37.066466565918844 39.0 36.0 40.0 31.0 41.0 16 36.99223299070524 38.0 36.0 40.0 31.0 41.0 17 37.0684968213139 39.0 36.0 40.0 31.0 41.0 18 37.05808028823147 39.0 36.0 40.0 31.0 41.0 19 37.14323256076086 39.0 36.0 40.0 31.0 41.0 20 37.09746339566964 39.0 36.0 40.0 31.0 41.0 21 37.04027404398122 39.0 36.0 40.0 31.0 41.0 22 36.952103723912266 39.0 36.0 40.0 31.0 41.0 23 36.821862975309585 39.0 35.0 40.0 31.0 41.0 24 36.743250311996526 38.0 35.0 40.0 30.0 41.0 25 36.66284160160693 38.0 35.0 40.0 30.0 41.0 26 36.40067846167657 38.0 35.0 40.0 30.0 41.0 27 36.24434238421368 38.0 35.0 40.0 30.0 41.0 28 36.081548704193544 38.0 34.0 40.0 30.0 41.0 29 35.91111119360524 38.0 34.0 40.0 29.0 41.0 30 35.73703602960879 38.0 34.0 40.0 29.0 41.0 31 35.49625334185573 38.0 34.0 40.0 27.0 41.0 32 35.25457195561246 38.0 34.0 40.0 27.0 41.0 33 35.40698521247824 38.0 34.0 40.0 27.0 41.0 34 35.40695787692522 38.0 34.0 40.0 27.0 41.0 35 35.30850500173125 38.0 34.0 40.0 27.0 41.0 36 35.226031275922374 38.0 34.0 40.0 26.0 41.0 37 35.07115545695258 38.0 33.0 40.0 26.0 41.0 38 34.94767772665392 38.0 33.0 40.0 25.0 41.0 39 34.916300561492505 38.0 33.0 40.0 25.0 41.0 40 34.75958414861901 38.0 33.0 40.0 24.0 41.0 41 34.6033540386086 38.0 33.0 40.0 24.0 41.0 42 34.41192653553251 38.0 33.0 40.0 23.0 41.0 43 34.06088842572188 37.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 5.0 15 18.0 16 40.0 17 106.0 18 255.0 19 617.0 20 1244.0 21 2615.0 22 4596.0 23 8179.0 24 13310.0 25 20898.0 26 30892.0 27 44240.0 28 61014.0 29 81493.0 30 104916.0 31 128832.0 32 156206.0 33 189368.0 34 227285.0 35 272524.0 36 329746.0 37 407122.0 38 475442.0 39 402210.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.48981733776012 25.189340889195165 13.352270234552543 21.96857153849217 2 18.315191750467573 23.28884500201473 35.4802654180956 22.9156978294221 3 20.120384425619285 26.85731583767946 31.738568170482058 21.283731566219195 4 13.49627122808178 16.09814340973564 35.46177173530815 34.94381362687442 5 11.45771392432574 40.482064164979846 34.667454560548926 13.392767350145485 6 31.869306358654605 36.25834999902132 15.292048323858134 16.580295318465943 7 24.545774227230666 35.00601044690592 21.748334724859223 18.699880601004192 8 27.65956369757564 33.68026987277831 20.283520306266187 18.37664612337986 9 25.178642901159364 13.529073891712063 23.42542152435193 37.866861682776644 10 16.337143886926654 27.659934921135243 33.87614092186284 22.126780270075265 11 31.840823387354234 21.657823671508996 24.959249777434604 21.542103163702166 12 20.101722004850203 27.13742088719731 31.867720221627216 20.893136886325273 13 30.920155211945026 20.741070217273773 28.770433325886362 19.56834124489483 14 20.989722507014438 22.343946052442416 28.291318700825535 28.375012739717615 15 23.186826018316843 28.87336349468509 26.560910699135455 21.37889978786261 16 21.98834762994006 28.158825637643957 27.134012379968237 22.718814352447747 17 19.736134293834922 26.87452711180646 28.06558102899121 25.323757565367405 18 20.77039687848233 26.10329329293521 32.11897107628509 21.007338752297365 19 20.12733643046274 24.712588595877257 33.284343072664655 21.87573190099535 20 24.206003427405882 23.876525644460973 32.0303498883292 19.88712103980394 21 23.681025818936046 24.604832520803704 30.84972397840964 20.86441768185061 22 22.20841570559137 24.2757259614184 31.75102103352689 21.764837299463345 23 21.26159314302839 26.201127574688492 32.58863637437423 19.948642907908884 24 20.048164569478537 25.393176371012977 31.1706636194837 23.387995440024785 25 21.100752098931753 26.24823921916162 32.07314184047242 20.57786684143422 26 22.420384358124092 25.330844560596173 30.899096711836698 21.349674369443036 27 21.23759860203957 26.642579882247887 30.54869541916877 21.571126096543775 28 21.01132096866401 26.11932340119075 30.744768953831265 22.124586676313978 29 20.082384632154575 26.073460417781742 31.619405407849825 22.224749542213857 30 19.396802212762395 26.4204532032206 33.24404844264967 20.93869614136733 31 20.781871061233666 25.673922624861046 32.41392506818702 21.130281245718272 32 21.721809114145845 26.032254602665926 30.35231815613933 21.8936181270489 33 22.66144343869108 25.970294015808726 29.92112511786348 21.44713742763672 34 21.040985105835837 28.445376478060354 30.0508508781462 20.46278753795761 35 19.87493815752973 29.413156297942677 30.169034960484943 20.542870584042653 36 20.802997056534647 26.00805757609914 32.13483244655899 21.054112920807217 37 20.80481942673633 26.331562034494095 31.310176182701387 21.55344235606819 38 21.146581334744432 25.854944731561496 31.78382369715717 21.214650236536905 39 21.943395831631893 25.36516586606119 31.80417349774262 20.887264804564296 40 20.377136138478537 26.1393019782166 31.01039628452463 22.473165598780227 41 21.26206560937697 25.607406112499635 30.870849973710623 22.25967830441277 42 19.041035052278403 27.252567685866573 31.25449264876109 22.45190461309393 43 19.614609199459768 26.990382609998605 30.883336584351778 22.511671606189847 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 240.0 1 356.5 2 473.0 3 1222.5 4 1972.0 5 1972.0 6 3484.0 7 4996.0 8 5557.5 9 6119.0 10 9308.0 11 12497.0 12 12497.0 13 23158.5 14 33820.0 15 53887.5 16 73955.0 17 71587.5 18 69220.0 19 69220.0 20 74041.0 21 78862.0 22 64459.5 23 50057.0 24 55425.5 25 60794.0 26 60794.0 27 66647.0 28 72500.0 29 76922.5 30 81345.0 31 86488.5 32 91632.0 33 91632.0 34 98978.0 35 106324.0 36 115528.0 37 124732.0 38 131534.5 39 138337.0 40 138337.0 41 146243.5 42 154150.0 43 173769.0 44 193388.0 45 237274.0 46 281160.0 47 281160.0 48 289178.5 49 297197.0 50 272429.5 51 247662.0 52 232374.5 53 217087.0 54 217087.0 55 188860.0 56 160633.0 57 134769.5 58 108906.0 59 95876.0 60 82846.0 61 82846.0 62 73129.0 63 63412.0 64 55908.0 65 48404.0 66 41579.5 67 34755.0 68 34755.0 69 29754.5 70 24754.0 71 20874.5 72 16995.0 73 13648.5 74 10302.0 75 10302.0 76 8179.0 77 6056.0 78 4769.5 79 3483.0 80 2721.0 81 1959.0 82 1959.0 83 1459.0 84 959.0 85 766.0 86 573.0 87 455.0 88 337.0 89 337.0 90 269.5 91 202.0 92 128.0 93 54.0 94 36.0 95 18.0 96 18.0 97 12.0 98 6.0 99 3.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2963174.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.743052050923666 #Duplication Level Percentage of deduplicated Percentage of total 1 72.986893595091 30.46695698375111 2 13.977796366701703 11.669517625848817 3 5.312033565686573 6.652214808861247 4 2.493127460293434 4.162829973784638 5 1.394617842863979 2.9107802602908976 6 0.8482313125620207 2.1244658298899837 7 0.5340329272340045 1.5604514994905327 8 0.3730162996511619 1.2456671049745112 9 0.27381968254759687 1.0287062335036559 >10 1.538842159352135 12.167807487438171 >50 0.15438882329977002 4.508284270250137 >100 0.09986499825955925 7.757524337171315 >500 0.006135720762492277 1.7843626708995732 >1k 0.005890291931986233 4.766701313454383 >5k 7.362864914982791E-4 2.154751707061306 >10k+ 5.726672711653283E-4 5.038977893329809 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34949 1.1794447440481053 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32529 1.0977755609356723 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28891 0.9750018054964036 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 16875 0.5694906880257453 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12826 0.43284667049589387 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10958 0.36980616055621435 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10527 0.35526094653908274 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 9607 0.3242131579178273 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9360 0.31587750162494677 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7293 0.24612122001610434 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6790 0.2291461790633962 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6747 0.22769503242131578 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6594 0.22253165018321572 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5714 0.1928337654150583 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5546 0.18716416923204646 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5446 0.1837894095993013 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4374 0.1476119863362732 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4366 0.14734200556565358 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3852 0.12999574105334347 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3763 0.1269922049802003 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3752 0.12662098142059833 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3466 0.11696916887094716 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3375 0.11389813760514908 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3364 0.1135269140455471 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2999 0.10120904138602729 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2995 0.10107405100071747 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2991 0.10093906061540765 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2975 0.10039909907416844 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.374759632745158E-5 0.0 3 0.0 0.0 0.0 3.374759632745158E-5 0.0 4 0.0 0.0 0.0 3.374759632745158E-5 0.0 5 0.0 0.0 0.0 3.374759632745158E-5 3.374759632745158E-5 6 0.0 0.0 0.0 3.374759632745158E-5 3.374759632745158E-5 7 0.0 0.0 0.0 3.374759632745158E-5 3.374759632745158E-5 8 0.0 0.0 0.0 3.374759632745158E-5 3.374759632745158E-5 9 0.0 0.0 0.0 1.0124278898235473E-4 3.374759632745158E-5 10 0.0 0.0 0.0 1.6873798163725788E-4 3.374759632745158E-5 11 0.0 0.0 0.0 3.7122355960196736E-4 3.374759632745158E-5 12 0.0 0.0 0.0 4.049711559294189E-4 3.374759632745158E-5 13 0.0 0.0 0.0 4.049711559294189E-4 3.374759632745158E-5 14 0.0 0.0 0.0 5.062139449117736E-4 3.374759632745158E-5 15 0.0 0.0 0.0 9.786802934960957E-4 3.374759632745158E-5 16 0.0 0.0 0.0 0.001754875009027482 3.374759632745158E-5 17 0.0 0.0 0.0 0.003037283669470642 3.374759632745158E-5 18 0.0 0.0 0.0 0.0036447404033647705 3.374759632745158E-5 19 0.0 0.0 0.0 0.004049711559294189 3.374759632745158E-5 20 0.0 0.0 0.0 0.00492714906380793 3.374759632745158E-5 21 0.0 0.0 0.0 0.006918257247127573 3.374759632745158E-5 22 0.0 0.0 0.0 0.011372939962351182 3.374759632745158E-5 23 0.0 0.0 0.0 0.02136222847527685 3.374759632745158E-5 24 0.0 0.0 0.0 0.03334262517152216 3.374759632745158E-5 25 0.0 0.0 0.0 0.03894472616187912 3.374759632745158E-5 26 0.0 0.0 0.0 0.0470441492804675 3.374759632745158E-5 27 0.0 0.0 0.0 0.10772232747722543 3.374759632745158E-5 28 0.0 0.0 0.0 0.16418205613305192 3.374759632745158E-5 29 0.0 0.0 0.0 0.23093480166875113 3.374759632745158E-5 30 0.0 0.0 0.0 0.3548222277868259 3.374759632745158E-5 31 0.0 0.0 0.0 0.5305797094601937 3.374759632745158E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8350 0.0 27.007784 1 GTATTGG 1260 0.0 19.234127 1 CGACGAG 165 0.0 19.060606 24 ATTGGAC 1350 0.0 17.540741 3 TATTGGA 1475 0.0 17.18305 2 CGTCTGT 780 0.0 17.076921 34 GTATCAA 14415 0.0 16.260494 2 TTGGACC 2055 0.0 15.394161 4 GTAACAC 220 1.8189894E-12 15.136364 3 CGAATTA 185 3.0559022E-10 15.0 15 GGACCCT 2180 0.0 14.766055 6 TGCGACG 215 1.2732926E-11 14.627907 22 TGGACCC 2195 0.0 14.328019 5 TATACTG 350 0.0 14.271429 5 GTATTAG 390 0.0 14.230768 1 ACGAGTC 200 9.858923E-10 13.875001 26 CAATGCG 215 1.9826984E-10 13.767442 19 TTTTTAC 1870 0.0 13.751338 1 AGTATCA 630 0.0 13.507937 1 TCTATAC 275 0.0 13.454546 3 >>END_MODULE