##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088276_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2993171 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.990200693511998 31.0 31.0 33.0 27.0 34.0 2 30.859744398165024 31.0 31.0 34.0 27.0 34.0 3 30.827875186549647 31.0 31.0 34.0 27.0 34.0 4 35.0422779052717 35.0 35.0 37.0 32.0 37.0 5 34.97409035434327 35.0 35.0 37.0 32.0 37.0 6 35.08868888546628 36.0 35.0 37.0 32.0 37.0 7 34.68914572538622 35.0 35.0 37.0 31.0 37.0 8 34.93256148746597 36.0 35.0 37.0 32.0 37.0 9 36.41751172919957 38.0 35.0 39.0 32.0 39.0 10 36.327185783906096 38.0 35.0 39.0 32.0 39.0 11 36.415541911905464 38.0 35.0 39.0 32.0 39.0 12 36.16158983232164 38.0 35.0 39.0 31.0 39.0 13 36.33709300270516 38.0 35.0 39.0 32.0 39.0 14 37.28767050061624 39.0 36.0 40.0 32.0 41.0 15 37.32856759603778 39.0 36.0 41.0 32.0 41.0 16 37.258343409046795 39.0 36.0 40.0 32.0 41.0 17 37.313842744033 39.0 36.0 40.0 32.0 41.0 18 37.31093145029135 39.0 36.0 40.0 32.0 41.0 19 37.38433353791013 39.0 36.0 40.0 32.0 41.0 20 37.34111181753398 39.0 36.0 40.0 32.0 41.0 21 37.285134394259465 39.0 36.0 40.0 31.0 41.0 22 37.19456823549339 39.0 36.0 40.0 31.0 41.0 23 37.09460501922543 39.0 36.0 40.0 31.0 41.0 24 37.02028818266648 39.0 36.0 40.0 31.0 41.0 25 36.939995409550605 39.0 36.0 40.0 31.0 41.0 26 36.721524096017234 38.0 35.0 40.0 30.0 41.0 27 36.57874875842376 38.0 35.0 40.0 30.0 41.0 28 36.444587028272025 38.0 35.0 40.0 30.0 41.0 29 36.28229559888159 38.0 35.0 40.0 30.0 41.0 30 36.139088612043885 38.0 35.0 40.0 30.0 41.0 31 35.93073867146247 38.0 34.0 40.0 29.0 41.0 32 35.70538168383965 38.0 34.0 40.0 29.0 41.0 33 35.877391903102094 38.0 34.0 40.0 29.0 41.0 34 35.88604927683718 38.0 34.0 40.0 29.0 41.0 35 35.80104110323132 38.0 34.0 40.0 29.0 41.0 36 35.736737727313276 38.0 34.0 40.0 28.0 41.0 37 35.607594754860315 38.0 34.0 40.0 27.0 41.0 38 35.5029298359499 38.0 34.0 40.0 27.0 41.0 39 35.50049729868424 38.0 34.0 40.0 27.0 41.0 40 35.37835526269632 38.0 34.0 40.0 26.0 41.0 41 35.25040400297878 38.0 34.0 40.0 26.0 41.0 42 35.10089199714951 38.0 34.0 40.0 25.0 41.0 43 34.77446126532697 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 3.0 15 14.0 16 26.0 17 85.0 18 191.0 19 473.0 20 880.0 21 1912.0 22 3466.0 23 6250.0 24 10203.0 25 16443.0 26 25055.0 27 36639.0 28 51818.0 29 71398.0 30 93243.0 31 117665.0 32 146363.0 33 180088.0 34 220573.0 35 268762.0 36 331192.0 37 415363.0 38 502897.0 39 492167.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.49360059949799 24.765474475063403 12.937115854723972 22.803809070714635 2 18.01457384158807 22.786068687689408 36.02213171248819 23.177225758234325 3 19.492838865537585 26.635865441700457 31.6486762700828 22.22261942267916 4 13.195804716803682 15.96307060304941 36.09406211673172 34.747062563415184 5 11.597700231627261 39.91800000735006 35.221342181920114 13.262957579102563 6 31.78826067738863 36.66576349964637 15.495238995700547 16.050736827264465 7 24.981132050257067 34.37879092106665 22.04685265225408 18.593224376422196 8 27.18595095301939 33.98459359655696 20.34153745308905 18.4879179973346 9 25.337977683199526 13.740812001719915 22.985890214758864 37.935320100321704 10 16.006101889935458 27.546104115000446 34.45349430420113 21.994299690862967 11 32.09726407211616 21.986147801111265 24.642694988024406 21.27389313874817 12 20.036743640774283 27.050843403200155 31.83810747865725 21.074305477368316 13 30.613653546690117 20.97898850416498 28.0619784168696 20.345379532275302 14 20.926435542773866 22.340086817625856 27.991484616147893 28.741993023452384 15 23.098914161603197 29.08340352088137 26.061457898663328 21.756224418852113 16 22.22238555698956 28.305566237278125 26.619628480965506 22.85241972476681 17 19.903239741398 27.215351211140295 27.812944866831863 25.06846418062984 18 20.981260342292504 26.653037865193802 31.214454503267604 21.151247289246086 19 20.423791357059116 25.200865570326584 32.31629599511688 22.05904707749741 20 24.094981542985682 24.594418427814517 31.131164908386456 20.179435120813345 21 23.57566607454101 25.205609702887006 29.995914032308878 21.222810190263104 22 22.23377815701141 24.87629340254867 30.946611469909335 21.943316970530585 23 21.453368350822586 26.518063952911476 31.677207884213765 20.35135981205217 24 20.40748757755571 25.772533543857 30.39448798615248 23.425490892434812 25 21.389923930173047 26.50643748720003 31.34117629764554 20.76246228498138 26 22.479570996779003 25.80590951870107 30.096576506988743 21.617942977531186 27 21.321701967578864 26.940191522636027 29.868256775172554 21.869849734612558 28 21.197084964407313 26.425419730446407 30.010948255211613 22.366547049934667 29 20.423123169374552 26.387199394889233 30.87484811258695 22.31482932314926 30 19.934677971956834 26.75470262140052 32.204374557952086 21.10624484869057 31 21.075775490274363 26.098943227767474 31.453064325426112 21.372216956532053 32 21.81933474565937 26.359503015363973 29.777951209603458 22.043211029373197 33 22.614010358913674 26.210764436779588 29.521300319961675 21.653924884345063 34 21.277501352244826 28.36450039105684 29.57064598046687 20.78735227623146 35 20.245051151437725 29.255795943499386 29.681431498567907 20.817721406494986 36 21.208911886424133 26.262114660338483 31.271050000150343 21.257923453087045 37 21.15729438779141 26.451846553370988 30.62324203996364 21.767617018873963 38 21.231797314620515 26.235119877882017 31.201591890339706 21.331490917157755 39 21.960121890797417 25.676013832821447 31.185455157757442 21.178409118623694 40 20.5608366511636 26.31483466865074 30.60673780415486 22.517590876030805 41 21.42015942289966 25.839151856008225 30.51716724503879 22.223521476053325 42 19.306514729696367 27.359579522853856 30.883400914949394 22.450504832500382 43 19.909821390090976 27.018603347419845 30.601325483909875 22.47024977857931 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 193.0 1 297.5 2 402.0 3 1057.0 4 1712.0 5 1712.0 6 3022.5 7 4333.0 8 4672.0 9 5011.0 10 7756.5 11 10502.0 12 10502.0 13 19152.0 14 27802.0 15 44415.5 16 61029.0 17 60130.0 18 59231.0 19 59231.0 20 64781.0 21 70331.0 22 59508.0 23 48685.0 24 54551.5 25 60418.0 26 60418.0 27 67700.0 28 74982.0 29 81075.5 30 87169.0 31 95002.0 32 102835.0 33 102835.0 34 112274.5 35 121714.0 36 130627.5 37 139541.0 38 145813.0 39 152085.0 40 152085.0 41 159424.0 42 166763.0 43 183935.5 44 201108.0 45 238854.0 46 276600.0 47 276600.0 48 280443.0 49 284286.0 50 261988.0 51 239690.0 52 226390.5 53 213091.0 54 213091.0 55 187177.5 56 161264.0 57 136712.5 58 112161.0 59 100550.5 60 88940.0 61 88940.0 62 78564.0 63 68188.0 64 59144.5 65 50101.0 66 42959.0 67 35817.0 68 35817.0 69 30359.5 70 24902.0 71 21108.0 72 17314.0 73 13985.0 74 10656.0 75 10656.0 76 8544.0 77 6432.0 78 5073.0 79 3714.0 80 2881.5 81 2049.0 82 2049.0 83 1549.0 84 1049.0 85 789.0 86 529.0 87 422.0 88 315.0 89 315.0 90 245.0 91 175.0 92 106.0 93 37.0 94 23.5 95 10.0 96 10.0 97 7.5 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2993171.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.3311728435558 #Duplication Level Percentage of deduplicated Percentage of total 1 73.4396237881959 33.2910427950842 2 14.206994673379105 12.880394622528494 3 5.208205305798956 7.082821647656905 4 2.3530754944527454 4.266706878118916 5 1.313264170762192 2.976590255703495 6 0.7567266576493462 2.0581984147937273 7 0.5207249730689931 1.6523551630702527 8 0.3275903657789558 1.1880044394407607 9 0.23440972150212017 0.9563460841460147 >10 1.4223386183726372 12.1616513726774 >50 0.13559551050884572 4.252518271098156 >100 0.07116842663618082 5.848941573992357 >500 0.004396053186613863 1.35211979273889 >1k 0.004768600066801158 4.037309728836378 >5k 7.45093760437681E-4 2.409206452231788 >10k+ 3.725468802188405E-4 3.585792507882285 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 29211 0.9759215226928232 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 26542 0.8867518761874948 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 24067 0.8040636502224564 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 16046 0.5360869793272753 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10298 0.3440498387830164 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9500 0.3173891501688343 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9350 0.31237774253458955 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8855 0.2958400973415819 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8420 0.28130701520227214 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6718 0.22444424324570833 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6210 0.20747227605773275 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6083 0.20322928426073886 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5848 0.19537807896708873 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5283 0.17650177687810018 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5062 0.16911830296364624 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4562 0.1524136108494971 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3924 0.13109842371184272 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3691 0.1233140371866492 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3618 0.12087515213798344 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3368 0.11252280608090885 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3232 0.10797912982586026 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3147 0.10513933216645491 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3052 0.10196544066476657 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3006 0.10042860899026483 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.340938422829835E-5 0.0 3 0.0 0.0 0.0 6.68187684565967E-5 0.0 4 0.0 0.0 0.0 6.68187684565967E-5 0.0 5 3.340938422829835E-5 0.0 0.0 1.0022815268489504E-4 0.0 6 3.340938422829835E-5 0.0 0.0 1.0022815268489504E-4 0.0 7 3.340938422829835E-5 0.0 0.0 1.336375369131934E-4 0.0 8 3.340938422829835E-5 0.0 0.0 1.336375369131934E-4 0.0 9 3.340938422829835E-5 0.0 0.0 1.6704692114149174E-4 0.0 10 3.340938422829835E-5 0.0 0.0 2.3386568959808844E-4 0.0 11 3.340938422829835E-5 0.0 0.0 3.006844580546852E-4 0.0 12 3.340938422829835E-5 0.0 0.0 4.3432199496787853E-4 0.0 13 3.340938422829835E-5 0.0 0.0 5.011407634244753E-4 0.0 14 3.340938422829835E-5 0.0 0.0 6.68187684565967E-4 0.0 15 3.340938422829835E-5 0.0 0.0 9.354627583923538E-4 0.0 16 6.68187684565967E-5 0.0 0.0 0.0017038785956432158 0.0 17 6.68187684565967E-5 0.0 0.0 0.0026393413540355694 0.0 18 6.68187684565967E-5 3.340938422829835E-5 0.0 0.0029400258120902546 0.0 19 1.0022815268489504E-4 3.340938422829835E-5 0.0 0.0035748041124279233 0.0 20 1.0022815268489504E-4 3.340938422829835E-5 0.0 0.004810951328874963 0.0 21 1.336375369131934E-4 3.340938422829835E-5 0.0 0.006514829924518178 0.0 22 1.336375369131934E-4 3.340938422829835E-5 0.0 0.010590774800370576 0.0 23 1.336375369131934E-4 1.6704692114149174E-4 0.0 0.017706973640998127 0.0 24 1.336375369131934E-4 1.6704692114149174E-4 0.0 0.029233211199761057 0.0 25 1.336375369131934E-4 2.004563053697901E-4 0.0 0.03364324991789644 0.0 26 1.6704692114149174E-4 2.004563053697901E-4 0.0 0.04095990506389378 0.0 27 1.6704692114149174E-4 2.004563053697901E-4 0.0 0.09678698610938032 0.0 28 1.6704692114149174E-4 2.004563053697901E-4 0.0 0.15702410587300225 0.0 29 1.6704692114149174E-4 2.004563053697901E-4 0.0 0.22297423033966318 0.0 30 1.6704692114149174E-4 2.3386568959808844E-4 0.0 0.3476914616639009 0.0 31 2.3386568959808844E-4 2.3386568959808844E-4 0.0 0.5169434021644603 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6660 0.0 29.583334 1 GTATTGG 1090 0.0 20.876146 1 ATTGGAC 1090 0.0 20.70642 3 TTGGACC 1765 0.0 17.818697 4 GTATCAA 11670 0.0 17.77078 2 GGACCCT 1870 0.0 16.917112 6 TGGACCC 1890 0.0 16.542328 5 TATTGGA 1450 0.0 16.45862 2 GCGTAAT 80 3.3848334E-4 16.1875 11 GACCCTC 1965 0.0 16.00509 7 TGCGTAA 95 7.065729E-5 15.578946 10 CGTCTGT 560 0.0 14.535715 34 GTTATAC 180 3.3378456E-9 14.388887 3 ACCCTCG 2155 0.0 14.336426 8 TAAACGT 230 4.0017767E-11 13.673913 4 TATACTG 465 0.0 13.526881 5 CTAGTAC 370 0.0 13.5 3 CCCTCGC 2255 0.0 13.372506 9 TTATACT 735 0.0 13.340136 4 TTTAGCG 125 4.8494563E-5 13.320001 26 >>END_MODULE