##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088274_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1915493 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.946589207060534 31.0 30.0 33.0 27.0 34.0 2 30.804152769026043 31.0 31.0 34.0 27.0 34.0 3 30.83047601844538 31.0 31.0 34.0 27.0 34.0 4 35.00533335282353 35.0 35.0 37.0 32.0 37.0 5 34.87413266454119 35.0 35.0 37.0 32.0 37.0 6 34.969173471268235 35.0 35.0 37.0 32.0 37.0 7 34.60444908960774 35.0 35.0 37.0 30.0 37.0 8 34.79699064418403 35.0 35.0 37.0 32.0 37.0 9 36.27883213355517 38.0 35.0 39.0 32.0 39.0 10 36.163420069924555 38.0 35.0 39.0 32.0 39.0 11 36.249526884201615 38.0 35.0 39.0 32.0 39.0 12 35.989439794350595 38.0 35.0 39.0 30.0 39.0 13 36.15718773182674 38.0 35.0 39.0 32.0 39.0 14 37.104242093288775 39.0 36.0 40.0 31.0 41.0 15 37.14863275407428 39.0 36.0 40.0 31.0 41.0 16 37.08311802757828 39.0 36.0 40.0 31.0 41.0 17 37.11964543853723 39.0 36.0 40.0 31.0 41.0 18 37.10450468887122 39.0 36.0 40.0 31.0 41.0 19 37.18068925336715 39.0 36.0 40.0 31.0 41.0 20 37.13462539408915 39.0 36.0 40.0 31.0 41.0 21 37.077548182112906 39.0 36.0 40.0 31.0 41.0 22 36.9967319118368 39.0 36.0 40.0 31.0 41.0 23 36.882618208471655 39.0 35.0 40.0 31.0 41.0 24 36.80913059979859 39.0 35.0 40.0 30.0 41.0 25 36.71896477825813 38.0 35.0 40.0 30.0 41.0 26 36.48256140847291 38.0 35.0 40.0 30.0 41.0 27 36.34262667626559 38.0 35.0 40.0 30.0 41.0 28 36.21193134091328 38.0 35.0 40.0 30.0 41.0 29 36.06108610159369 38.0 34.0 40.0 29.0 41.0 30 35.92003364146984 38.0 34.0 40.0 29.0 41.0 31 35.72489014577448 38.0 34.0 40.0 28.0 41.0 32 35.47925155560475 38.0 34.0 40.0 27.0 41.0 33 35.65643727228447 38.0 34.0 40.0 28.0 41.0 34 35.68652195544437 38.0 34.0 40.0 28.0 41.0 35 35.6378739050469 38.0 34.0 40.0 28.0 41.0 36 35.576009413764496 38.0 34.0 40.0 27.0 41.0 37 35.43795513739805 38.0 34.0 40.0 27.0 41.0 38 35.351389955484045 38.0 34.0 40.0 27.0 41.0 39 35.36497549194907 38.0 34.0 40.0 26.0 41.0 40 35.28425789078843 38.0 34.0 40.0 26.0 41.0 41 35.16515643753331 38.0 34.0 40.0 25.0 41.0 42 35.03581897715105 38.0 33.0 40.0 25.0 41.0 43 34.714088226895115 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 2.0 15 6.0 16 18.0 17 44.0 18 178.0 19 351.0 20 659.0 21 1362.0 22 2654.0 23 4394.0 24 7503.0 25 11896.0 26 17840.0 27 26162.0 28 36622.0 29 49536.0 30 63878.0 31 79674.0 32 97853.0 33 119462.0 34 144355.0 35 173244.0 36 210231.0 37 258521.0 38 313878.0 39 295169.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.95837781709461 24.826976658228457 13.199212944135008 23.015432580541926 2 18.073571660141802 23.464977423566673 35.248105840115315 23.21334507617621 3 19.19171722371212 26.500853827187047 31.816613268751176 22.490815680349655 4 13.622759258321487 17.02919300670898 36.5910499281386 32.75699780683093 5 12.176917378450353 39.45616089434939 35.21500731143366 13.151914415766594 6 31.367642690419643 37.63986608147354 15.999014352962918 14.993476875143893 7 24.968715625690095 34.04971983713853 22.893792877342804 18.087771659828565 8 26.260758979542082 34.64434482402181 20.709551013759906 18.38534518267621 9 25.289886206840745 14.24667174455871 22.914570818060938 37.5488712305396 10 15.857066561976474 28.291776581799045 34.96880437568814 20.882352480536344 11 32.47988898941421 23.059181108988653 23.978892118112675 20.48203778348446 12 19.654417948799605 27.66123394864925 31.871116208725375 20.81323189382577 13 29.50780817262188 21.841896577016986 27.613517773231226 21.03677747712991 14 20.778410571064473 23.11592890185451 28.286242758391705 27.819417768689313 15 23.182752429792224 29.919242722369642 25.292914147950423 21.605090699887704 16 21.9786759857645 28.6754898086289 27.04985087390035 22.29598333170625 17 20.3199907282355 28.382510403326975 28.17911629016655 23.11838257827097 18 20.69112233769583 27.41346483646769 30.643808147563057 21.251604678273424 19 20.755492189217083 26.746012645308543 31.690170624481528 20.80832454099284 20 22.7923568501686 26.137135452857308 30.708177999084306 20.362329697889788 21 22.510288474037754 26.64144426526226 29.96544492723283 20.882822333467153 22 21.96901789774225 26.590230295803746 30.407367711602184 21.03338409485182 23 21.414434821740407 27.309992779926628 30.581891972458266 20.693680425874696 24 20.5963686633154 27.254915575259215 30.054090513512712 22.094625247912678 25 21.527512760422514 27.44468395342609 30.452943445890952 20.574859840260444 26 21.707100991755123 27.11495160775842 29.868759635247947 21.309187765238505 27 21.302975265375544 27.704147182996753 29.759440520012344 21.23343703161536 28 21.04001424176439 27.694906742024116 29.910628751971423 21.354450264240068 29 20.53252087060616 27.504929540332434 30.399745652946784 21.56280393611462 30 20.399343667661537 27.85235967972736 31.01024122771527 20.738055424895833 31 21.141606886582203 27.598221450039233 30.32895447803777 20.9312171853408 32 21.28204070701381 27.889843502429922 29.71078463873269 21.117331151823578 33 21.770739960939558 27.63090233167127 29.405641263110855 21.192716444278314 34 21.16181056260712 28.341111139534313 29.70629493294938 20.790783364909192 35 20.614170868805054 28.751971424588866 29.81644934228421 20.817408364321874 36 20.908507627018214 27.565958215456803 30.475183151282724 21.050351006242256 37 20.866795127938342 27.264417045637863 30.291157420048 21.5776304063758 38 20.930695126528782 27.371282484457005 30.438221387392172 21.259801001622037 39 21.256668648749958 26.944708229160845 30.793377997204896 21.005245124884297 40 20.50965469463997 27.029386168469422 30.617600795199984 21.843358341690625 41 20.739517189569472 26.688011911293856 30.660775058953494 21.911695840183178 42 19.539930451325063 27.569403803616094 30.69319491117952 22.197470833879322 43 19.854470885563142 27.081487637908364 30.706559616767066 22.357481859761428 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 275.0 1 329.5 2 384.0 3 842.5 4 1301.0 5 1301.0 6 2118.0 7 2935.0 8 3123.0 9 3311.0 10 4987.5 11 6664.0 12 6664.0 13 11638.5 14 16613.0 15 25530.0 16 34447.0 17 34059.0 18 33671.0 19 33671.0 20 38129.0 21 42587.0 22 38397.0 23 34207.0 24 39578.5 25 44950.0 26 44950.0 27 51120.5 28 57291.0 29 62132.0 30 66973.0 31 72306.5 32 77640.0 33 77640.0 34 85531.5 35 93423.0 36 99378.5 37 105334.0 38 109044.5 39 112755.0 40 112755.0 41 116181.0 42 119607.0 43 125175.5 44 130744.0 45 143064.0 46 155384.0 47 155384.0 48 155949.5 49 156515.0 50 144322.5 51 132130.0 52 123650.5 53 115171.0 54 115171.0 55 105029.0 56 94887.0 57 84547.5 58 74208.0 59 66724.5 60 59241.0 61 59241.0 62 52146.5 63 45052.0 64 39130.0 65 33208.0 66 28000.5 67 22793.0 68 22793.0 69 19409.0 70 16025.0 71 13307.5 72 10590.0 73 8561.0 74 6532.0 75 6532.0 76 5140.5 77 3749.0 78 2964.0 79 2179.0 80 1730.0 81 1281.0 82 1281.0 83 986.0 84 691.0 85 521.0 86 351.0 87 288.0 88 225.0 89 225.0 90 174.0 91 123.0 92 76.0 93 29.0 94 22.5 95 16.0 96 16.0 97 8.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1915493.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.15282176929935 #Duplication Level Percentage of deduplicated Percentage of total 1 73.389521311579 36.806915820738176 2 14.234704552224308 14.278212006926797 3 5.38581572587338 8.103415685460517 4 2.4619623855392274 4.938974428986717 5 1.3102052151101025 3.285524431731174 6 0.7756715850381114 2.3341271253555798 7 0.5051296120740867 1.7733572783322893 8 0.32668813669903646 1.310746551520902 9 0.2314443438907912 1.044682823580055 >10 1.2025393425695405 11.212070025479862 >50 0.11367400397748414 3.9637494949179377 >100 0.05634878012541753 5.155640672516181 >500 0.003986836689712633 1.4244411833449855 >1k 0.001888501589863879 1.9161104389016896 >5k 1.0491675499243772E-4 0.2817732088512577 >10k+ 3.1475026497731313E-4 2.1702588233557654 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 15348 0.8012558646781794 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 14190 0.7408014542470267 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11707 0.6111742512240974 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5355 0.27956249383318027 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4647 0.24260072994263096 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 3009 0.15708749653483461 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 2832 0.14784705556219732 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2515 0.13129779122137225 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 2427 0.12670367367565424 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 2271 0.11855955620824508 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2111 0.11020661521603055 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.0441176240268172E-4 0.0 3 0.0 0.0 0.0 1.5661764360402257E-4 0.0 4 0.0 0.0 0.0 2.0882352480536344E-4 0.0 5 0.0 0.0 0.0 2.0882352480536344E-4 0.0 6 0.0 0.0 0.0 2.0882352480536344E-4 0.0 7 0.0 0.0 0.0 2.610294060067043E-4 0.0 8 0.0 0.0 0.0 2.610294060067043E-4 0.0 9 0.0 0.0 0.0 3.1323528720804514E-4 0.0 10 0.0 0.0 0.0 3.1323528720804514E-4 0.0 11 0.0 0.0 0.0 4.698529308120677E-4 0.0 12 0.0 1.0441176240268172E-4 0.0 5.220588120134086E-4 0.0 13 0.0 1.0441176240268172E-4 0.0 6.786764556174312E-4 0.0 14 0.0 1.0441176240268172E-4 0.0 7.30882336818772E-4 0.0 15 0.0 1.0441176240268172E-4 0.0 7.30882336818772E-4 0.0 16 0.0 1.0441176240268172E-4 0.0 9.397058616241354E-4 0.0 17 0.0 1.0441176240268172E-4 0.0 0.0010963235052281579 0.0 18 0.0 1.0441176240268172E-4 0.0 0.0010963235052281579 0.0 19 0.0 1.0441176240268172E-4 0.0 0.0011485293864294988 0.0 20 0.0 1.0441176240268172E-4 0.0 0.0015139705548388848 0.0 21 0.0 1.0441176240268172E-4 0.0 0.001774999960845589 0.0 22 0.0 1.0441176240268172E-4 0.0 0.002819117584872406 0.0 23 0.0 1.0441176240268172E-4 0.0 0.00548161752614079 0.0 24 0.0 1.0441176240268172E-4 0.0 0.010232352715462807 0.0 25 0.0 1.0441176240268172E-4 0.0 0.013625734993549963 0.0 26 0.0 1.0441176240268172E-4 0.0 0.02129999953014707 0.0 27 0.0 1.0441176240268172E-4 0.0 0.06661470441291094 0.0 28 0.0 1.0441176240268172E-4 0.0 0.1144874974745405 0.0 29 0.0 1.0441176240268172E-4 0.0 0.17066102564718325 0.0 30 0.0 1.0441176240268172E-4 0.0 0.2587845531150466 0.0 31 0.0 1.0441176240268172E-4 0.0 0.41028602036133777 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3920 0.0 26.617348 1 ACGTTTA 120 2.382876E-10 20.041666 26 TAAGCGC 50 0.007036553 18.5 14 CTGTGCG 160 1.8189894E-12 18.5 9 CGATGCG 65 0.0015804537 17.076923 33 TAGTGCG 65 0.0015804537 17.076923 7 GTATCAA 6450 0.0 16.807753 2 CAATGCG 100 1.0939683E-4 14.8 19 AGCCGTC 125 2.9610546E-6 14.799999 12 ATCGCTA 75 0.004105735 14.799999 25 GTATATA 355 0.0 14.591549 1 CGGACCA 115 2.2112548E-5 14.478261 9 CGAATTA 90 8.277563E-4 14.388889 15 GCCGTCA 130 4.4473963E-6 14.230769 13 TCACGTT 170 2.4392648E-8 14.147059 24 GCGTTAT 105 1.6565403E-4 14.095238 1 CGCGATA 80 0.006300643 13.875 14 TACCGTG 135 6.571967E-6 13.703704 7 TACATCG 95 0.0012456041 13.631579 5 ACGGACC 110 2.4577012E-4 13.454545 8 >>END_MODULE