##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088273_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2970004 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.852410973183876 31.0 30.0 33.0 27.0 34.0 2 30.729424606835547 31.0 31.0 34.0 27.0 34.0 3 30.732659619313644 31.0 31.0 34.0 27.0 34.0 4 34.94090411999445 35.0 35.0 37.0 32.0 37.0 5 34.85451602085384 35.0 35.0 37.0 32.0 37.0 6 34.96458422278219 35.0 35.0 37.0 32.0 37.0 7 34.577648716971424 35.0 35.0 37.0 30.0 37.0 8 34.800588484055915 35.0 35.0 37.0 32.0 37.0 9 36.20501251850166 38.0 35.0 39.0 32.0 39.0 10 36.143164790350454 38.0 35.0 39.0 31.0 39.0 11 36.232873087039614 38.0 35.0 39.0 32.0 39.0 12 35.971358961132715 38.0 35.0 39.0 30.0 39.0 13 36.137705201743834 38.0 35.0 39.0 31.0 39.0 14 37.02625080639622 39.0 36.0 40.0 31.0 41.0 15 37.07193458325309 39.0 36.0 40.0 31.0 41.0 16 36.99178889994761 38.0 36.0 40.0 31.0 41.0 17 37.0965207454266 39.0 36.0 40.0 31.0 41.0 18 37.10636921701116 39.0 36.0 40.0 31.0 41.0 19 37.19130243595632 39.0 36.0 40.0 31.0 41.0 20 37.15447083572951 39.0 36.0 40.0 31.0 41.0 21 37.08195578187774 39.0 36.0 40.0 31.0 41.0 22 37.00207811167931 39.0 36.0 40.0 31.0 41.0 23 36.87336515371697 39.0 35.0 40.0 31.0 41.0 24 36.802490838396174 39.0 35.0 40.0 30.0 41.0 25 36.70747783504669 38.0 35.0 40.0 30.0 41.0 26 36.4390616982334 38.0 35.0 40.0 30.0 41.0 27 36.29076358146319 38.0 35.0 40.0 30.0 41.0 28 36.13013282136994 38.0 35.0 40.0 30.0 41.0 29 35.964688936445874 38.0 34.0 40.0 29.0 41.0 30 35.80196861687728 38.0 34.0 40.0 29.0 41.0 31 35.5324299226533 38.0 34.0 40.0 27.0 41.0 32 35.289396243237384 38.0 34.0 40.0 27.0 41.0 33 35.39715939776512 38.0 34.0 40.0 27.0 41.0 34 35.37595605931844 38.0 34.0 40.0 27.0 41.0 35 35.277115788396245 38.0 34.0 40.0 27.0 41.0 36 35.192644184990996 38.0 34.0 40.0 26.0 41.0 37 35.03031612078637 38.0 33.0 40.0 25.0 41.0 38 34.89785535642376 38.0 33.0 40.0 25.0 41.0 39 34.850317373309935 38.0 33.0 40.0 25.0 41.0 40 34.68411894394755 38.0 33.0 40.0 24.0 41.0 41 34.5160444228358 38.0 33.0 40.0 23.0 41.0 42 34.32151943229706 38.0 33.0 40.0 23.0 41.0 43 33.973469396000816 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 7.0 15 10.0 16 41.0 17 100.0 18 270.0 19 606.0 20 1288.0 21 2583.0 22 4660.0 23 8030.0 24 13214.0 25 21054.0 26 31107.0 27 44440.0 28 61841.0 29 82551.0 30 105926.0 31 129703.0 32 156658.0 33 189897.0 34 226627.0 35 269615.0 36 324858.0 37 404648.0 38 460695.0 39 429572.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.57166387654697 25.008013457220933 13.532237667019977 21.888084999212122 2 18.053881408913927 23.043638998465994 35.874227778817804 23.02825181380227 3 19.890107892110585 26.473297679060366 32.052313734257595 21.584280694571454 4 13.06472987915168 15.835500558248405 35.020323204951914 36.079446357648 5 11.192846878320703 40.64105637568165 34.59126654374876 13.574830202248886 6 31.882313963213516 35.78129861104564 15.28230265009744 17.0540847756434 7 24.42134758067666 35.42954824303267 21.30000498315827 18.8490991931324 8 28.00258854870229 33.49099866532166 20.011420860039244 18.494991925936798 9 25.271413775873704 13.602001882825748 23.654715616544625 37.47186872475592 10 16.50044915764423 27.85420491016174 33.50779998949496 22.137545942699067 11 31.522920507851165 21.6415533447093 25.131380294437317 21.704145853002217 12 20.250073737274427 27.43359941602772 31.692280549117108 20.624046297580744 13 31.296860206248883 20.799130236861636 28.783732277801644 19.120277279087837 14 20.96192463040454 22.5481851202894 28.484574431549586 28.005315817756475 15 23.147712932373153 28.973428992014828 26.793398258049482 21.085459817562537 16 21.700576834239953 28.40666207856959 27.209087933888306 22.68367315330215 17 19.393879604202553 27.24100708281874 27.902757033323862 25.46235627965484 18 20.51815418430413 26.36181634772209 32.41258260931635 20.70744685865743 19 19.84094970915864 24.850606261809748 33.75396127412623 21.55448275490538 20 24.33791334961165 23.65198834749044 32.538845065528534 19.471253237369375 21 23.660843554419454 24.59542142030785 31.265143077248382 20.478591948024313 22 21.950711177493364 24.251246799667612 32.07568070615393 21.722361316685095 23 20.97956770428592 26.338550385790725 33.18200918247921 19.49987272744414 24 19.576842320751084 25.505723224615185 31.546792529572347 23.37064192506138 25 20.742665666443546 26.388314628532488 32.77200973466702 20.09700997035694 26 22.323067578360163 25.336935573150743 31.242348495153543 21.09764835333555 27 20.878860769211087 26.84794363913315 30.888375907911236 21.38481968374453 28 20.614180991002033 26.267439370452028 31.068274655522348 22.05010498302359 29 19.65360989412809 26.175621312294528 31.959519246438727 22.211249547138657 30 18.943947550238992 26.524408721335057 34.01463432372482 20.517009404701138 31 20.473945489635703 25.89077321107985 32.810460861332174 20.824820437952273 32 21.62683955981204 26.112759444095023 30.74669259704701 21.513708399045928 33 22.53108076622119 26.076227506764297 30.213730351878315 21.178961375136197 34 20.700409831097872 28.810668268460244 30.305817769942394 20.183104130499487 35 19.397078253093262 29.703899388687695 30.55120464484223 20.347817713376816 36 20.450208147867816 26.025183804466256 32.62473720574114 20.89987084192479 37 20.47131923054649 26.39363448668756 31.70908187329041 21.425964409475544 38 20.89020755527602 25.888315301932252 32.19278492554219 21.02869221724954 39 21.748724917542198 25.374410270154517 32.160529076728515 20.716335735574766 40 19.963306446725323 26.10430827702589 31.46046267951154 22.471922596737244 41 20.946739465670753 25.67525161582274 31.259116149338517 22.11889276916799 42 18.515496948825657 27.234475105084034 31.758980795985458 22.491047150104848 43 19.08967125970201 27.14592303579389 31.354233866351695 22.410171838152408 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 249.0 1 376.0 2 503.0 3 1259.0 4 2015.0 5 2015.0 6 3615.5 7 5216.0 8 5873.0 9 6530.0 10 9834.5 11 13139.0 12 13139.0 13 24141.5 14 35144.0 15 57759.5 16 80375.0 17 77543.0 18 74711.0 19 74711.0 20 79332.0 21 83953.0 22 67232.0 23 50511.0 24 55341.5 25 60172.0 26 60172.0 27 65173.0 28 70174.0 29 73773.5 30 77373.0 31 83104.0 32 88835.0 33 88835.0 34 98002.5 35 107170.0 36 115668.5 37 124167.0 38 129463.0 39 134759.0 40 134759.0 41 143556.5 42 152354.0 43 174697.0 44 197040.0 45 247511.0 46 297982.0 47 297982.0 48 303079.0 49 308176.0 50 279911.5 51 251647.0 52 233236.5 53 214826.0 54 214826.0 55 187425.0 56 160024.0 57 131394.5 58 102765.0 59 90199.0 60 77633.0 61 77633.0 62 68486.0 63 59339.0 64 51995.0 65 44651.0 66 37969.5 67 31288.0 68 31288.0 69 26713.5 70 22139.0 71 18369.5 72 14600.0 73 11775.0 74 8950.0 75 8950.0 76 7099.0 77 5248.0 78 4088.0 79 2928.0 80 2307.0 81 1686.0 82 1686.0 83 1256.5 84 827.0 85 628.5 86 430.0 87 356.5 88 283.0 89 283.0 90 216.0 91 149.0 92 88.0 93 27.0 94 19.5 95 12.0 96 12.0 97 8.0 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2970004.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.85840705733357 #Duplication Level Percentage of deduplicated Percentage of total 1 71.70020860491744 28.578561006705307 2 14.092032137371616 11.233719063927685 3 5.629326088135538 6.731279120381206 4 2.762618802415279 4.404543390836463 5 1.568376887104384 3.125650219276012 6 0.9640372803255646 2.305499420259669 7 0.6313878678868655 1.761628025450765 8 0.42299847446645533 1.3488036303932078 9 0.3245284024914406 1.1641666651353024 >10 1.6384318908080053 12.196598259107834 >50 0.15632572078479542 4.349333954916164 >100 0.09411781674452899 7.041799602916372 >500 0.007290397014240673 1.9846860686154626 >1k 0.006861550131046862 5.615203528174659 >5k 6.861550131046861E-4 1.915151119625654 >10k+ 7.719243897427719E-4 6.243376924278287 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38748 1.3046447075492154 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36191 1.2185505474066702 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32059 1.079426155655009 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 19357 0.6517499639731126 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13057 0.4396290375366498 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11099 0.3737032003997301 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10742 0.3616830145683305 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10702 0.36033621503540064 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10673 0.3593597853740264 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8803 0.2963969072095526 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 8084 0.27218818560513725 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7931 0.2670366773916803 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7442 0.250572053101612 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6303 0.21222193640143247 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6235 0.2099323771954516 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5702 0.19198627341916039 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5521 0.18589200553265248 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4692 0.15797958521267985 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4613 0.15531965613514326 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4598 0.15481460631029453 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3848 0.1295621150678585 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3832 0.1290233952546865 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3826 0.12882137532474702 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3449 0.11612778972688252 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3444 0.11595943978526628 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3296 0.11097628151342558 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3099 0.1043432938137457 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 6.73399766464961E-5 0.0 3 0.0 0.0 0.0 6.73399766464961E-5 0.0 4 0.0 0.0 0.0 6.73399766464961E-5 0.0 5 0.0 0.0 0.0 6.73399766464961E-5 0.0 6 3.366998832324805E-5 0.0 0.0 6.73399766464961E-5 0.0 7 3.366998832324805E-5 0.0 0.0 6.73399766464961E-5 0.0 8 6.73399766464961E-5 0.0 0.0 6.73399766464961E-5 0.0 9 6.73399766464961E-5 0.0 0.0 1.0100996496974415E-4 0.0 10 6.73399766464961E-5 0.0 0.0 1.346799532929922E-4 0.0 11 6.73399766464961E-5 0.0 0.0 2.693599065859844E-4 0.0 12 6.73399766464961E-5 0.0 0.0 4.3770984820222465E-4 0.0 13 6.73399766464961E-5 0.0 0.0 4.713798365254727E-4 0.0 14 6.73399766464961E-5 0.0 0.0 7.07069754788209E-4 0.0 15 6.73399766464961E-5 0.0 0.0 0.0012121195796369298 0.0 16 6.73399766464961E-5 0.0 0.0 0.002188549241011123 0.0 17 6.73399766464961E-5 0.0 0.0 0.0031313089140620684 0.0 18 6.73399766464961E-5 0.0 0.0 0.0036363587389107895 0.0 19 6.73399766464961E-5 0.0 0.0 0.004444438458668743 0.0 20 6.73399766464961E-5 0.0 0.0 0.005555548073335928 0.0 21 6.73399766464961E-5 0.0 0.0 0.007979787232609788 0.0 22 6.73399766464961E-5 0.0 0.0 0.012895605527804003 0.0 23 6.73399766464961E-5 0.0 0.0 0.023030272013101667 0.0 24 6.73399766464961E-5 0.0 0.0 0.03774405691036106 0.0 25 6.73399766464961E-5 0.0 0.0 0.04521879431812213 0.0 26 6.73399766464961E-5 0.0 0.0 0.05404033125881312 0.0 27 1.0100996496974415E-4 0.0 0.0 0.12134663791698597 0.0 28 1.0100996496974415E-4 0.0 0.0 0.19201994340748363 0.0 29 1.0100996496974415E-4 0.0 0.0 0.27225552558178373 0.0 30 3.0302989490923245E-4 0.0 0.0 0.42774353165854323 0.0 31 3.0302989490923245E-4 0.0 0.0 0.6267331626489392 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8745 0.0 29.511148 1 GTATTGG 1000 0.0 22.199999 1 ATTGGAC 1085 0.0 20.631336 3 TATTGGA 1200 0.0 18.808334 2 GTATGCG 50 0.0070374436 18.499998 33 TTGGACC 1835 0.0 18.449593 4 ATCACGT 205 0.0 18.04878 23 GCGCATA 125 8.594725E-9 17.76 26 GTATCAA 15270 0.0 17.494434 2 TGGACCC 1965 0.0 16.852417 5 GGACCCT 1960 0.0 16.612244 6 CGTCTGT 1015 0.0 16.40394 34 ACGTTTA 220 0.0 15.977273 26 TCACGTT 220 0.0 15.977273 24 GACCCTC 2105 0.0 15.292161 7 TACGACG 135 3.9780025E-7 15.074075 5 TATTCGC 75 0.0041064424 14.8 10 TGCGACG 125 2.9623825E-6 14.799999 22 TAGGTCG 115 2.2120654E-5 14.478261 21 CTAGGCG 155 1.2121018E-7 14.322581 22 >>END_MODULE