##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088271_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2603759 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.964915339706938 31.0 30.0 33.0 27.0 34.0 2 30.793461299605685 31.0 31.0 34.0 27.0 34.0 3 30.791254106082782 31.0 31.0 34.0 27.0 34.0 4 34.98036492624701 35.0 35.0 37.0 32.0 37.0 5 34.886857808268736 35.0 35.0 37.0 32.0 37.0 6 34.98523442453776 35.0 35.0 37.0 32.0 37.0 7 34.59849701911736 35.0 35.0 37.0 30.0 37.0 8 34.82360771484611 35.0 35.0 37.0 32.0 37.0 9 36.23870988059955 38.0 35.0 39.0 32.0 39.0 10 36.177879750007584 38.0 35.0 39.0 32.0 39.0 11 36.260468422768774 38.0 35.0 39.0 32.0 39.0 12 35.99032590957919 38.0 35.0 39.0 30.0 39.0 13 36.15463412704479 38.0 35.0 39.0 31.0 39.0 14 37.04970314072846 39.0 36.0 40.0 31.0 41.0 15 37.09353092970586 39.0 36.0 40.0 31.0 41.0 16 37.02402756937182 39.0 36.0 40.0 31.0 41.0 17 37.117232047973715 39.0 36.0 40.0 31.0 41.0 18 37.11983520748272 39.0 36.0 40.0 31.0 41.0 19 37.20582780510792 39.0 36.0 40.0 31.0 41.0 20 37.16696937005307 39.0 36.0 40.0 31.0 41.0 21 37.10369008806114 39.0 36.0 40.0 31.0 41.0 22 37.01778812862481 39.0 36.0 40.0 31.0 41.0 23 36.88429228665172 39.0 35.0 40.0 31.0 41.0 24 36.81010953778748 39.0 35.0 40.0 30.0 41.0 25 36.72418568692417 38.0 35.0 40.0 30.0 41.0 26 36.461648332276525 38.0 35.0 40.0 30.0 41.0 27 36.32022817779986 38.0 35.0 40.0 30.0 41.0 28 36.155975649052 38.0 35.0 40.0 30.0 41.0 29 35.993749805569564 38.0 34.0 40.0 29.0 41.0 30 35.82727587307428 38.0 34.0 40.0 29.0 41.0 31 35.563621287530836 38.0 34.0 40.0 27.0 41.0 32 35.33678616185292 38.0 34.0 40.0 27.0 41.0 33 35.45403049975055 38.0 34.0 40.0 27.0 41.0 34 35.44678098088187 38.0 34.0 40.0 27.0 41.0 35 35.349704024066746 38.0 34.0 40.0 27.0 41.0 36 35.25986506431663 38.0 34.0 40.0 26.0 41.0 37 35.10570486746277 38.0 33.0 40.0 26.0 41.0 38 34.98504892349868 38.0 33.0 40.0 25.0 41.0 39 34.936812124317186 38.0 33.0 40.0 25.0 41.0 40 34.77977531714725 38.0 33.0 40.0 24.0 41.0 41 34.62172919997588 38.0 33.0 40.0 24.0 41.0 42 34.41197745259834 38.0 33.0 40.0 23.0 41.0 43 34.07072121498188 37.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 3.0 15 8.0 16 33.0 17 72.0 18 205.0 19 485.0 20 1069.0 21 2040.0 22 3748.0 23 6717.0 24 10950.0 25 17427.0 26 26620.0 27 38630.0 28 53258.0 29 71646.0 30 91381.0 31 112430.0 32 135971.0 33 165243.0 34 198258.0 35 235085.0 36 285666.0 37 355975.0 38 409383.0 39 381451.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.65247935772857 24.95269339443474 13.436612221023529 21.958215026813157 2 17.85752828890846 22.9678706823481 36.2399899529872 22.93461107575624 3 19.652049210391592 26.840003241467432 32.16453596511813 21.343411583022853 4 12.824535604101609 15.822201670738345 35.608556705900966 35.744706019259084 5 11.113202105110343 40.65433859278067 34.86724385782248 13.36521544428651 6 31.566247106587053 36.18372514506911 15.470709846802258 16.779317901541578 7 24.44139415360638 35.31501955442113 21.526454637314743 18.717131654657745 8 27.93975940169578 33.56378220872208 20.106584365142858 18.389874024439283 9 25.145683605894405 13.637667695051652 23.774051285084372 37.44259741396957 10 16.30239204165977 27.749342393055578 33.62745937700071 22.32080618828394 11 31.384855510821087 21.633184945304077 25.318741097006292 21.663218446868544 12 20.205134192527037 27.313126906138397 31.902376525630828 20.57936237570374 13 31.212642951978275 20.78003378960956 28.853400026653773 19.153923231758395 14 20.918449057689287 22.56341696754577 28.302004909056482 28.21612906570846 15 23.037731218595884 28.898911151147246 26.939129159035076 21.124228471221798 16 21.812118556287274 28.51323797632577 27.075662532515487 22.598980934871467 17 19.366001231296753 27.042825392058173 27.905923704920465 25.68524967172461 18 20.594340720473745 26.341992480870925 32.33724780211993 20.726418996535394 19 19.69594728237137 24.67202225705221 33.75535139772921 21.876679062847217 20 24.53195553044656 23.66397965403096 32.27099743102184 19.533067384500637 21 23.73433946843775 24.611187133678655 31.044040558285158 20.61043283959844 22 22.094825212318035 24.1950963971704 32.04574616928832 21.66433222122324 23 21.01576989268208 26.297979190854452 33.123226842422824 19.563024074040648 24 19.702591522487296 25.275611145271128 31.437394935552792 23.584402396688787 25 20.90320187083367 26.33988015019823 32.58807746799915 20.16884051096895 26 22.437214811355428 25.261055266635662 31.11866344004956 21.18306648195935 27 20.894291675996126 26.864160623160593 30.756072278578777 21.485475422264503 28 20.652909889125684 26.266486260825218 30.87048378901427 22.210120061034836 29 19.787507215529548 26.101916498416326 31.893005458646517 22.217570827407606 30 19.045003781071905 26.505794123035198 33.85282585677093 20.596376239121977 31 20.522444665577726 25.81878737625103 32.76697267297012 20.891795285201127 32 21.76895019853988 25.99791301729538 30.457580751521167 21.775556032643575 33 22.682590823497872 25.96184977181068 29.998168033216594 21.357391371474858 34 20.839831950652883 28.96120570298557 30.09656423655185 20.1023981098097 35 19.472078637078162 30.015604362769366 30.28463847844597 20.2276785217065 36 20.630980056141908 26.019343572120153 32.550477982025214 20.79919838971272 37 20.660821527645222 26.539783443859438 31.45310299455518 21.346292033940163 38 20.903585930955977 25.957701922489758 32.06775281429656 21.070959332257708 39 21.918042338019763 25.528207487712955 32.031881598873014 20.52186857539427 40 20.01352659750768 26.3704129299217 31.136253393651252 22.47980707891936 41 21.237871861412675 25.835301961510265 30.99741565943699 21.929410517640076 42 18.5519858020654 27.629362010846627 31.516127260625886 22.302524926462088 43 19.3131545584672 27.41593980088019 30.965269827199833 22.30563581345278 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 163.0 1 279.0 2 395.0 3 1045.0 4 1695.0 5 1695.0 6 2953.0 7 4211.0 8 4735.5 9 5260.0 10 8057.5 11 10855.0 12 10855.0 13 20067.0 14 29279.0 15 48212.5 16 67146.0 17 65306.5 18 63467.0 19 63467.0 20 67829.0 21 72191.0 22 58667.0 23 45143.0 24 49711.5 25 54280.0 26 54280.0 27 59516.5 28 64753.0 29 67675.5 30 70598.0 31 75123.0 32 79648.0 33 79648.0 34 86487.0 35 93326.0 36 101446.5 37 109567.0 38 113977.0 39 118387.0 40 118387.0 41 124607.5 42 130828.0 43 150901.0 44 170974.0 45 215692.0 46 260410.0 47 260410.0 48 265876.0 49 271342.0 50 247417.5 51 223493.0 52 209561.0 53 195629.0 54 195629.0 55 167615.0 56 139601.0 57 115403.5 58 91206.0 59 79257.5 60 67309.0 61 67309.0 62 58905.5 63 50502.0 64 44291.0 65 38080.0 66 32678.5 67 27277.0 68 27277.0 69 22761.5 70 18246.0 71 15075.5 72 11905.0 73 9630.0 74 7355.0 75 7355.0 76 5716.5 77 4078.0 78 3256.5 79 2435.0 80 1858.5 81 1282.0 82 1282.0 83 963.5 84 645.0 85 508.5 86 372.0 87 296.0 88 220.0 89 220.0 90 189.5 91 159.0 92 94.5 93 30.0 94 21.5 95 13.0 96 13.0 97 8.0 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2603759.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.59280079812012 #Duplication Level Percentage of deduplicated Percentage of total 1 72.73643457774803 29.525755995800218 2 14.055680326502271 11.411188631515252 3 5.429803147556395 6.612327526252872 4 2.542331971468418 4.12801501122038 5 1.3591794286778058 2.7586449898610446 6 0.8029344479716936 1.9556014860278101 7 0.5531607204923713 1.5718040055404003 8 0.3658072097123552 1.187931135549583 9 0.2887027603954458 1.054732827833976 >10 1.587131151834906 12.22990856829908 >50 0.16532944965723695 4.698963696070358 >100 0.09835132911463766 7.445804709887111 >500 0.006521750399088135 1.789265750049153 >1k 0.007097198963713513 5.562183635621341 >5k 8.631728469381299E-4 2.5540027358019963 >10k+ 6.713566587296567E-4 5.513869294669385 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 32410 1.2447388563995363 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 30437 1.16896379426821 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 27498 1.0560885243219515 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 18775 0.7210728796328693 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10940 0.4201617738047185 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10938 0.4200849617802569 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10631 0.40829431602540783 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 9847 0.37818400243647743 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9782 0.3756876116414768 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7879 0.302600970366305 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7274 0.279365332966684 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6985 0.2682659954319889 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6759 0.2595862366678329 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5865 0.2252512617335168 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5724 0.21983601400897704 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5487 0.21073378911028248 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4694 0.180277821411275 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4113 0.15796392830519262 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4015 0.1542001391065763 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4000 0.15362404892311463 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3893 0.14951460561442131 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3507 0.13468988489334074 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3434 0.1318862460004939 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3317 0.12739274256949282 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3020 0.11598615693695154 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2952 0.11337454810525859 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2886 0.11083975129802721 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2839 0.1090346687231806 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.840601223077866E-5 0.0 0.0 0.0 3 0.0 3.840601223077866E-5 0.0 0.0 0.0 4 0.0 3.840601223077866E-5 0.0 0.0 0.0 5 0.0 3.840601223077866E-5 0.0 0.0 0.0 6 7.681202446155731E-5 3.840601223077866E-5 0.0 0.0 0.0 7 7.681202446155731E-5 3.840601223077866E-5 0.0 0.0 0.0 8 7.681202446155731E-5 3.840601223077866E-5 0.0 0.0 0.0 9 7.681202446155731E-5 7.681202446155731E-5 0.0 1.1521803669233597E-4 0.0 10 7.681202446155731E-5 1.1521803669233597E-4 0.0 4.224661345385652E-4 0.0 11 7.681202446155731E-5 1.5362404892311463E-4 0.0 4.992781590001226E-4 0.0 12 7.681202446155731E-5 1.9203006115389327E-4 0.0 7.681202446155731E-4 0.0 13 1.1521803669233597E-4 1.9203006115389327E-4 0.0 8.065262568463517E-4 0.0 14 1.1521803669233597E-4 1.9203006115389327E-4 0.0 9.601503057694664E-4 0.0 15 1.1521803669233597E-4 1.9203006115389327E-4 0.0 0.0012673984036156956 0.0 16 1.1521803669233597E-4 1.9203006115389327E-4 0.0 0.0020739246604620475 0.0 17 1.1521803669233597E-4 1.9203006115389327E-4 0.0 0.0030724809784622924 0.0 18 1.1521803669233597E-4 2.688420856154506E-4 0.0 0.0037637891986163083 0.0 19 1.1521803669233597E-4 2.688420856154506E-4 0.0 0.004608721467693438 0.0 20 1.1521803669233597E-4 2.688420856154506E-4 0.0 0.006068149932463028 0.0 21 1.1521803669233597E-4 2.688420856154506E-4 0.0 0.008218886617386633 0.0 22 1.1521803669233597E-4 2.688420856154506E-4 0.0 0.01401819446423421 0.0 23 1.1521803669233597E-4 3.0724809784622926E-4 0.0 0.023619697521928874 0.0 24 1.1521803669233597E-4 3.0724809784622926E-4 0.0 0.038060358120701646 0.0 25 1.1521803669233597E-4 3.0724809784622926E-4 0.0 0.0433603878085491 0.0 26 1.1521803669233597E-4 3.0724809784622926E-4 0.0 0.052385800682782084 0.0 27 1.1521803669233597E-4 3.0724809784622926E-4 0.0 0.10661508995264155 0.0 28 1.1521803669233597E-4 3.0724809784622926E-4 0.0 0.1638784541887325 0.0 29 1.1521803669233597E-4 3.0724809784622926E-4 0.0 0.2348143587789807 0.0 30 1.1521803669233597E-4 3.0724809784622926E-4 0.0 0.36981149177016764 3.840601223077866E-5 31 1.1521803669233597E-4 3.0724809784622926E-4 0.0 0.5476697344109036 3.840601223077866E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7450 0.0 29.50067 1 GTATTGG 1050 0.0 25.019047 1 ATTGGAC 1205 0.0 22.875519 3 TATTGGA 1330 0.0 21.421053 2 GACGTAT 45 0.0038270883 20.555557 28 TTGGACC 1890 0.0 19.772488 4 GGACCCT 1895 0.0 18.841688 6 TGGACCC 1980 0.0 18.126263 5 GTATCAA 13360 0.0 17.115269 2 CGAACGA 65 0.0015806601 17.076923 16 GACCCTC 2110 0.0 16.308058 7 AGCCGTC 160 6.311893E-10 16.1875 12 TCTAACG 160 6.311893E-10 16.1875 2 ACGTTTA 140 3.4784534E-8 15.857143 26 CCGCGTT 70 0.002593675 15.857143 11 ATAACGC 140 3.4784534E-8 15.857143 3 TATACCG 190 2.7284841E-11 15.578948 5 CGTCTGT 705 0.0 15.482269 34 CGGGATA 205 9.276846E-11 14.439025 24 AGTATCA 540 0.0 14.046295 1 >>END_MODULE