##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088269_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2420443 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.95654555798257 31.0 30.0 33.0 27.0 34.0 2 30.782712503454945 31.0 31.0 34.0 27.0 34.0 3 30.78689107737716 31.0 31.0 34.0 27.0 34.0 4 34.972681034009064 35.0 35.0 37.0 32.0 37.0 5 34.87675107408024 35.0 35.0 37.0 32.0 37.0 6 34.98157320787971 35.0 35.0 37.0 32.0 37.0 7 34.60224306046455 35.0 35.0 37.0 30.0 37.0 8 34.826751136052366 35.0 35.0 37.0 32.0 37.0 9 36.248263231152315 38.0 35.0 39.0 32.0 39.0 10 36.176435057549384 38.0 35.0 39.0 32.0 39.0 11 36.25810481800232 38.0 35.0 39.0 32.0 39.0 12 35.99873824750263 38.0 35.0 39.0 30.0 39.0 13 36.17880487167019 38.0 35.0 39.0 32.0 39.0 14 37.07858850631889 39.0 36.0 40.0 31.0 41.0 15 37.12010735224916 39.0 36.0 40.0 31.0 41.0 16 37.039030871621435 39.0 36.0 40.0 31.0 41.0 17 37.137462439726946 39.0 36.0 40.0 31.0 41.0 18 37.14064284926354 39.0 36.0 40.0 31.0 41.0 19 37.22490221831293 39.0 36.0 40.0 31.0 41.0 20 37.187612763448676 39.0 36.0 40.0 31.0 41.0 21 37.12645784263459 39.0 36.0 40.0 31.0 41.0 22 37.04676499301987 39.0 36.0 40.0 31.0 41.0 23 36.93325891169509 39.0 35.0 40.0 31.0 41.0 24 36.86218721118407 39.0 35.0 40.0 31.0 41.0 25 36.77427024722334 38.0 35.0 40.0 30.0 41.0 26 36.50992648866344 38.0 35.0 40.0 30.0 41.0 27 36.36585905968453 38.0 35.0 40.0 30.0 41.0 28 36.197184151826754 38.0 35.0 40.0 30.0 41.0 29 36.022735094360826 38.0 34.0 40.0 29.0 41.0 30 35.870182441809206 38.0 34.0 40.0 29.0 41.0 31 35.615226220985164 38.0 34.0 40.0 28.0 41.0 32 35.406475178304134 38.0 34.0 40.0 27.0 41.0 33 35.49977999895061 38.0 34.0 40.0 27.0 41.0 34 35.479249459706345 38.0 34.0 40.0 27.0 41.0 35 35.36495220089876 38.0 34.0 40.0 27.0 41.0 36 35.28288003477049 38.0 34.0 40.0 27.0 41.0 37 35.11392873122813 38.0 34.0 40.0 26.0 41.0 38 34.99005429997732 38.0 33.0 40.0 25.0 41.0 39 34.94419286056313 38.0 33.0 40.0 25.0 41.0 40 34.789591822653954 38.0 33.0 40.0 24.0 41.0 41 34.62866714894753 38.0 33.0 40.0 24.0 41.0 42 34.43769838827025 38.0 33.0 40.0 23.0 41.0 43 34.0940113028896 37.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 4.0 15 8.0 16 32.0 17 79.0 18 195.0 19 447.0 20 992.0 21 1975.0 22 3654.0 23 6194.0 24 10197.0 25 16358.0 26 24522.0 27 34937.0 28 49017.0 29 66216.0 30 84288.0 31 104339.0 32 125948.0 33 152529.0 34 182698.0 35 218269.0 36 263775.0 37 329373.0 38 381997.0 39 362397.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.50615651762921 25.152296501095044 13.52810208709728 21.813444894178463 2 17.957663121998742 23.09259090174815 36.08818716243266 22.861558813820444 3 19.837401665728134 26.688172371751783 32.17287083397543 21.30155512854465 4 13.035836828216985 15.936917332901457 35.46301234939224 35.564233489489325 5 11.051200131546167 40.79881244879553 34.810611115403255 13.339376304255046 6 31.54645657840321 36.18560734543222 15.362187830905336 16.905748245259236 7 24.166567855553716 35.5305619673754 21.56080519144636 18.74206498562453 8 27.64907085190604 33.78261747952751 20.19184091507216 18.3764707534943 9 25.09276194481754 13.645435980107774 23.794652466511295 37.467149608563396 10 16.31238579053504 27.879937680829503 33.756382612604384 22.051293916031074 11 31.39888028761677 21.730526188800976 25.15750215972861 21.713091363853643 12 20.010303898914373 27.477325431749478 31.902424473536456 20.609946195799694 13 30.9927975994477 21.070853558625423 28.804561809553043 19.131787032373825 14 20.76607464005556 22.709024752906803 28.53791640621159 27.986984200826047 15 22.87833260275082 29.078726497587425 27.01641806892375 21.02652283073801 16 21.726601287450272 28.40694864535129 27.317561289400327 22.548888777798116 17 19.193304696702214 27.223157083228156 28.12675200366214 25.45678621640749 18 20.360570358401333 26.389838554347282 32.61923540442803 20.63035568282335 19 19.6435115390034 24.952002587956006 33.81141386101635 21.593072012024244 20 24.177268376078263 23.882198424007505 32.569533758902814 19.37099944101142 21 23.516810765632574 24.699652088481326 31.279232768546915 20.50430437733919 22 21.74932440053329 24.427181305240403 32.19051223267807 21.632982061548237 23 20.78983062191508 26.503330175509195 33.23936981783913 19.467469384736596 24 19.554395620966904 25.50400897686911 31.7067991272672 23.234796274896784 25 20.720504469636346 26.331708699605816 32.795112299690594 20.152674531067248 26 22.08244523833034 25.351268342200168 31.453209185260718 21.11307723420878 27 20.738063238836858 26.9083386801507 31.00424178549133 21.349356295521112 28 20.498272423684423 26.31419124515636 31.204535698630377 21.98300063252884 29 19.575011681745863 26.276760080695972 32.14998246188818 21.998245775669993 30 18.906373750590287 26.587570952920604 34.031745428419505 20.474309868069607 31 20.323139193940946 25.753095611010053 33.067500453429396 20.85626474161961 32 21.36398171739636 26.11108792894524 30.887651557999916 21.637278795658478 33 22.366484151868068 26.04853739584035 30.46537348741532 21.119604964876267 34 20.5926766298566 28.80282659000852 30.528502427035054 20.075994353099823 35 19.287130496359552 29.824912216482684 30.62356766922419 20.264389617933574 36 20.34325947770718 26.069731863134145 32.875469490502354 20.711539168656316 37 20.349580634619365 26.56071636473158 31.836692704599944 21.253010296049112 38 20.66675397850724 26.056593772297056 32.42794810702008 20.848704142175624 39 21.6151340890903 25.559122854783194 32.32379361959774 20.50194943652877 40 19.792575160827997 26.360381136841475 31.553397456581294 22.29364624574923 41 20.861346455999996 25.854192806853955 31.299766199823754 21.984694537322298 42 18.484095680005687 27.46683148498023 31.853218605023958 22.195854229990132 43 19.13728189426481 27.301985628250698 31.35091386163607 22.20981861584842 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 157.0 1 279.5 2 402.0 3 1050.0 4 1698.0 5 1698.0 6 3033.0 7 4368.0 8 4885.5 9 5403.0 10 8160.5 11 10918.0 12 10918.0 13 19728.0 14 28538.0 15 46679.0 16 64820.0 17 62543.5 18 60267.0 19 60267.0 20 64081.5 21 67896.0 22 54866.5 23 41837.0 24 45773.0 25 49709.0 26 49709.0 27 54510.0 28 59311.0 29 62856.0 30 66401.0 31 71521.5 32 76642.0 33 76642.0 34 83288.5 35 89935.0 36 97963.5 37 105992.0 38 110407.5 39 114823.0 40 114823.0 41 120526.0 42 126229.0 43 143797.5 44 161366.0 45 200824.5 46 240283.0 47 240283.0 48 245105.5 49 249928.0 50 227176.5 51 204425.0 52 189809.0 53 175193.0 54 175193.0 55 150898.5 56 126604.0 57 103435.0 58 80266.0 59 69902.5 60 59539.0 61 59539.0 62 52763.0 63 45987.0 64 39722.5 65 33458.0 66 28862.5 67 24267.0 68 24267.0 69 20649.0 70 17031.0 71 14233.5 72 11436.0 73 9154.0 74 6872.0 75 6872.0 76 5388.0 77 3904.0 78 2984.0 79 2064.0 80 1642.0 81 1220.0 82 1220.0 83 915.5 84 611.0 85 470.0 86 329.0 87 252.0 88 175.0 89 175.0 90 140.5 91 106.0 92 66.0 93 26.0 94 15.5 95 5.0 96 5.0 97 3.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2420443.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.48733556799095 #Duplication Level Percentage of deduplicated Percentage of total 1 74.0596348288714 32.20656191846 2 13.855196113867343 12.050511255281464 3 5.102994613575965 6.657469174866848 4 2.3318121592367067 4.056171914009929 5 1.256967610866447 2.7331086145922523 6 0.7587831376598626 1.9798474158448507 7 0.4776224618539939 1.4539369791418209 8 0.3172141374533674 1.1035838113876315 9 0.23279238211432524 0.9111168394809873 >10 1.3746334789916919 11.436545994815555 >50 0.13895312985524097 4.188867128619089 >100 0.0799061515127399 6.441125021967382 >500 0.005684984673714049 1.7387867462965672 >1k 0.006455830053200693 5.515837510814257 >5k 8.672010519224811E-4 2.8252770476442537 >10k+ 4.817783621791562E-4 4.701252626777116 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 31051 1.2828643351650917 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 29122 1.2031681803702876 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 25777 1.0649703380744764 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 15517 0.6410809921985355 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10728 0.44322464937203643 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9422 0.38926758448763304 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9381 0.38757367969417167 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 9101 0.37600554939736236 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8852 0.36571817638341414 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6930 0.2863112248460302 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6448 0.2663975148350943 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6144 0.25383783051284414 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5958 0.24615328681567797 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5189 0.21438224325051242 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4865 0.20099626390706166 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4816 0.19897184110512 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4209 0.17389378721167986 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3786 0.1564176475132858 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3737 0.15439322471134417 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3573 0.14761760553749873 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3379 0.13960254383185228 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3105 0.12828230204140315 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3056 0.12625787923946152 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3045 0.12580341697780117 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2896 0.11964751906985623 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2657 0.10977329356650829 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2625 0.10845122153258721 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2511 0.10374133991174342 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2444 0.10097325159072121 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 4.131475106003323E-5 0.0 0.0 0.0 0.0 3 4.131475106003323E-5 0.0 0.0 0.0 0.0 4 4.131475106003323E-5 0.0 0.0 0.0 0.0 5 4.131475106003323E-5 0.0 0.0 0.0 0.0 6 1.6525900424013291E-4 0.0 0.0 0.0 0.0 7 1.6525900424013291E-4 0.0 0.0 4.131475106003323E-5 0.0 8 1.6525900424013291E-4 0.0 0.0 4.131475106003323E-5 0.0 9 1.6525900424013291E-4 0.0 0.0 1.2394425318009968E-4 0.0 10 1.6525900424013291E-4 0.0 0.0 2.4788850636019936E-4 0.0 11 1.6525900424013291E-4 0.0 0.0 3.7183275954029904E-4 0.0 12 1.6525900424013291E-4 0.0 0.0 6.610360169605317E-4 0.0 13 1.6525900424013291E-4 0.0 0.0 7.023507680205648E-4 0.0 14 1.6525900424013291E-4 0.0 0.0 0.0010328687765008306 0.0 15 1.6525900424013291E-4 0.0 0.0 0.001652590042401329 0.0 16 1.6525900424013291E-4 0.0 0.0 0.0028507178231422926 0.0 17 1.6525900424013291E-4 0.0 0.0 0.004420678363423555 0.0 18 1.6525900424013291E-4 0.0 0.0 0.005288288135684253 0.0 19 1.6525900424013291E-4 0.0 0.0 0.006114583156884917 0.0 20 1.6525900424013291E-4 0.0 0.0 0.00768454369716618 0.0 21 2.0657375530016612E-4 0.0 0.0 0.010163428760768173 0.0 22 2.0657375530016612E-4 0.0 0.0 0.016360641419773156 0.0 23 2.0657375530016612E-4 0.0 0.0 0.02805271596976256 0.0 24 2.0657375530016612E-4 0.0 0.0 0.04461993114483588 0.0 25 2.0657375530016612E-4 0.0 0.0 0.051560809322921466 0.0 26 2.0657375530016612E-4 0.0 0.0 0.06135240532414934 0.0 27 2.0657375530016612E-4 0.0 0.0 0.12786915453080283 0.0 28 2.0657375530016612E-4 0.0 0.0 0.19810423133285932 0.0 29 2.0657375530016612E-4 0.0 0.0 0.27899851390840436 0.0 30 2.0657375530016612E-4 0.0 0.0 0.4391344890170932 0.0 31 2.4788850636019936E-4 0.0 0.0 0.649096053904182 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7500 0.0 29.797335 1 ATTGGAC 925 0.0 22.0 3 GTATTGG 885 0.0 21.949152 1 TTGGACC 1565 0.0 19.268372 4 TATTGGA 1185 0.0 18.578058 2 GTATCAA 12595 0.0 18.37515 2 GGACCCT 1705 0.0 17.903227 6 TGGACCC 1700 0.0 17.738235 5 ACGTGCG 85 2.72513E-5 17.411764 9 CGCGATA 75 2.0684575E-4 17.266666 14 TCCGTTA 75 2.0684575E-4 17.266666 14 TACGTGC 75 2.0684575E-4 17.266666 8 CGTCTGT 725 0.0 17.096552 34 GTAATAC 185 1.8189894E-12 17.0 3 AGTATCA 460 0.0 16.48913 1 TAGGTCG 135 2.2226232E-8 16.444445 21 CATTGCG 160 6.311893E-10 16.1875 29 TGCGACG 115 1.2435066E-6 16.086956 22 GACCCTC 1910 0.0 16.078533 7 CGGGTCA 70 0.0025936044 15.857143 34 >>END_MODULE