##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088266_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2305751 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.920344391046562 31.0 30.0 33.0 27.0 34.0 2 30.7631049493202 31.0 31.0 34.0 27.0 34.0 3 30.77277858710676 31.0 31.0 34.0 27.0 34.0 4 34.95785017549596 35.0 35.0 37.0 32.0 37.0 5 34.87219912297555 35.0 35.0 37.0 32.0 37.0 6 34.98333037695744 35.0 35.0 37.0 32.0 37.0 7 34.58877172773643 35.0 35.0 37.0 30.0 37.0 8 34.82802913237379 35.0 35.0 37.0 32.0 37.0 9 36.215912299289904 38.0 35.0 39.0 32.0 39.0 10 36.159996027324716 38.0 35.0 39.0 32.0 39.0 11 36.25492518489637 38.0 35.0 39.0 32.0 39.0 12 35.99637645175043 38.0 35.0 39.0 30.0 39.0 13 36.17554193839664 38.0 35.0 39.0 32.0 39.0 14 37.0401708597329 39.0 36.0 40.0 31.0 41.0 15 37.089654954069196 39.0 36.0 40.0 31.0 41.0 16 36.99027475213065 38.0 36.0 40.0 31.0 41.0 17 37.122945192260566 39.0 36.0 40.0 31.0 41.0 18 37.155593557153395 39.0 36.0 40.0 31.0 41.0 19 37.25051707664878 39.0 36.0 40.0 31.0 41.0 20 37.20976679615448 39.0 36.0 40.0 31.0 41.0 21 37.150555719156145 39.0 36.0 40.0 31.0 41.0 22 37.074098200542906 39.0 36.0 40.0 31.0 41.0 23 36.95320917132856 39.0 35.0 40.0 31.0 41.0 24 36.8769286015706 39.0 35.0 40.0 31.0 41.0 25 36.785659422895186 38.0 35.0 40.0 30.0 41.0 26 36.51137525257497 38.0 35.0 40.0 30.0 41.0 27 36.35319425211135 38.0 35.0 40.0 30.0 41.0 28 36.17832844916906 38.0 35.0 40.0 30.0 41.0 29 35.999665185009135 38.0 34.0 40.0 30.0 41.0 30 35.81984958479905 38.0 34.0 40.0 29.0 41.0 31 35.53097710897664 38.0 34.0 40.0 28.0 41.0 32 35.30100865184489 37.0 34.0 40.0 27.0 41.0 33 35.35130506286238 38.0 34.0 40.0 27.0 41.0 34 35.317944565566705 38.0 34.0 40.0 27.0 41.0 35 35.19691371704924 38.0 34.0 40.0 27.0 41.0 36 35.09129606796224 38.0 34.0 40.0 26.0 41.0 37 34.909499768188326 38.0 33.0 40.0 25.0 41.0 38 34.7470563820638 38.0 33.0 40.0 25.0 41.0 39 34.65511150163222 38.0 33.0 40.0 24.0 41.0 40 34.44101119331619 38.0 33.0 40.0 23.0 41.0 41 34.24723094557912 38.0 33.0 40.0 22.0 41.0 42 34.00937438604602 38.0 33.0 40.0 21.0 41.0 43 33.64360548905758 37.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 1.0 15 10.0 16 30.0 17 75.0 18 222.0 19 424.0 20 1081.0 21 2016.0 22 3678.0 23 6459.0 24 10382.0 25 16188.0 26 24351.0 27 35071.0 28 49056.0 29 65110.0 30 82421.0 31 100373.0 32 121828.0 33 148067.0 34 176194.0 35 208624.0 36 252852.0 37 316167.0 38 352519.0 39 332550.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.14095667745563 25.651772459385253 14.130753927895945 21.076516935263175 2 17.951721586589358 23.302386077247718 36.03368273503948 22.71220960112345 3 20.060405481771447 26.395261240264016 32.816292826068384 20.728040451896153 4 13.023218899178618 15.90358195659462 34.70500500704542 36.368194137181334 5 10.714513405827429 41.32497394558216 34.3877547922564 13.572757856334011 6 31.43843372506398 35.57222787716453 15.092089301923755 17.89724909584773 7 23.45235890605707 36.63235969538775 21.073090719683087 18.84219067887209 8 28.19441474816665 33.40742343817698 20.003721130338878 18.394440683317494 9 24.876623711753783 13.670383315457741 24.630846956154414 36.82214601663406 10 16.68965989822839 28.484775676124613 33.12564973407797 21.699914691569038 11 30.60321778023733 21.78084277096703 25.397581959196806 22.218357489598834 12 20.054420446960663 28.234054761333727 31.661961764301523 20.049563027404087 13 31.317171715419402 21.18624257346088 29.396322499697497 18.10026321142222 14 20.554127483843658 23.322292823466196 29.193178274670593 26.93040141801955 15 22.8864695277157 29.1999873360133 27.736559585141674 20.17698355112933 16 21.303210971175986 28.412391450768098 28.0528122941289 22.231585283927018 17 18.57386161818861 27.45404859414568 28.577153387334537 25.39493640033117 18 19.68226404325532 26.542545140390267 33.70489701619993 20.070293800154484 19 18.927672589104375 24.79990250465033 35.54273640128531 20.729688504959988 20 23.91793389659161 23.520449519484107 33.97214183144667 18.589474752477607 21 23.12209774602722 24.52966517199819 32.53243737073084 19.815799711243756 22 21.15007214569136 24.288572356685524 33.463717461252315 21.097638036370796 23 20.14870643013925 26.66736347506734 34.612540556200564 18.57138953859285 24 18.60834062307682 25.604889686700776 32.775958895821795 23.01081079440061 25 19.780323200553745 26.836635872650604 34.29294837126819 19.09009255552746 26 21.475085557807414 25.42421102712305 32.61106684980295 20.48963656526659 27 20.003157322711775 27.182336687699582 32.08095757087387 20.73354841871477 28 19.66435230864044 26.650319136801848 32.19523703990587 21.490091514651844 29 18.632497611407302 26.534261505253603 33.33352126920903 21.49971961413006 30 17.82876815406347 26.828178758244057 35.839125733871526 19.503927353820945 31 19.451146285960625 26.03034759607607 34.3461631373032 20.172342980660098 32 20.821459038725344 26.51244648706647 31.86701426129708 20.799080212911107 33 21.857607347887956 26.4152980959349 31.289935470048587 20.437159086128553 34 19.893865382688762 29.57955997850592 31.309148299187555 19.217426339617766 35 18.20664937367478 30.618961023978734 31.53050784755162 19.643881754794858 36 19.456784362231655 26.28969910454338 34.22216882915805 20.031347704066917 37 19.528518040326123 26.78337773679812 32.91959973128061 20.768504491595145 38 19.889571770759286 26.301061996720378 33.6223208837381 20.18704534878224 39 21.144694288325148 25.573750157757715 33.360063597500336 19.921491956416805 40 19.059126505854273 26.583095919724204 32.525498199935726 21.832279374485797 41 20.226772101584256 25.961823284474345 32.28809181910796 21.52331279483344 42 17.379023146905283 27.876687465385462 32.68470879986607 22.05958058784318 43 18.158378766831284 27.64617688553534 32.310253795834846 21.885190551798527 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 215.0 1 302.5 2 390.0 3 1143.0 4 1896.0 5 1896.0 6 3355.5 7 4815.0 8 5537.0 9 6259.0 10 9581.5 11 12904.0 12 12904.0 13 23448.5 14 33993.0 15 55598.5 16 77204.0 17 73251.0 18 69298.0 19 69298.0 20 73838.5 21 78379.0 22 61371.0 23 44363.0 24 47843.5 25 51324.0 26 51324.0 27 54596.5 28 57869.0 29 59257.0 30 60645.0 31 64128.0 32 67611.0 33 67611.0 34 73045.0 35 78479.0 36 86389.5 37 94300.0 38 98471.5 39 102643.0 40 102643.0 41 108097.0 42 113551.0 43 132790.0 44 152029.0 45 196565.5 46 241102.0 47 241102.0 48 246029.0 49 250956.0 50 224373.5 51 197791.0 52 180737.0 53 163683.0 54 163683.0 55 139450.0 56 115217.0 57 91318.0 58 67419.0 59 57940.5 60 48462.0 61 48462.0 62 42251.0 63 36040.0 64 31331.0 65 26622.0 66 22350.5 67 18079.0 68 18079.0 69 15243.5 70 12408.0 71 10476.0 72 8544.0 73 6772.0 74 5000.0 75 5000.0 76 3959.5 77 2919.0 78 2246.0 79 1573.0 80 1253.5 81 934.0 82 934.0 83 678.0 84 422.0 85 320.5 86 219.0 87 162.5 88 106.0 89 106.0 90 88.0 91 70.0 92 41.0 93 12.0 94 9.0 95 6.0 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2305751.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.7745328420871 #Duplication Level Percentage of deduplicated Percentage of total 1 72.19677599315222 27.27199485846134 2 13.814036616569005 10.436375597087594 3 5.459110216837053 6.186460145234535 4 2.738018632419012 4.137094990102335 5 1.4854618764816203 2.805631421941165 6 0.9322647986543314 2.112952035257386 7 0.62601964703326 1.6553319801654753 8 0.4145457989228632 1.2527419116768745 9 0.31386207607037875 1.0670393970365544 >10 1.723282663716308 12.193691528949252 >50 0.16689336767971252 4.398860578770539 >100 0.10909941862566169 7.879134589056848 >500 0.00967343609387518 2.506885472826118 >1k 0.009207246402604086 6.986145924895728 >5k 0.0010489268053599592 2.972100231551726 >10k+ 6.992845369066395E-4 6.137559336986567 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37192 1.6130102513237554 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 34093 1.478607186985932 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 29309 1.2711259802120871 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 15938 0.6912281508280816 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12565 0.5449417565036294 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10313 0.44727292756242976 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9864 0.42779987951864706 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9464 0.4104519525308674 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8789 0.38117732573898916 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7599 0.32956724295034456 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6953 0.30155034086508037 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6700 0.29057777704530974 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6696 0.290404297775432 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5797 0.2514148318703971 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5647 0.24490935924997972 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4889 0.21203503760813722 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4789 0.20769805586119233 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4512 0.19568461642215487 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4180 0.18128583702229772 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4051 0.17569113056873878 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3664 0.15890701120806192 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3405 0.14767422848347458 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3362 0.14580932633228827 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3237 0.14038809914860712 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3230 0.14008451042632097 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3163 0.13717873265586789 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2765 0.11991754530302709 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 2762 0.11978743585061874 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2704 0.11727198643739069 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2615 0.11341207268260971 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 2520 0.10929194002301203 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2473 0.10725355860194792 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 2388 0.10356712411704473 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2333 0.10118178415622502 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2308 0.1000975387194888 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.336981746944922E-5 0.0 3 0.0 0.0 0.0 4.336981746944922E-5 0.0 4 0.0 0.0 0.0 4.336981746944922E-5 0.0 5 0.0 0.0 0.0 8.673963493889844E-5 0.0 6 0.0 0.0 0.0 8.673963493889844E-5 0.0 7 0.0 0.0 0.0 8.673963493889844E-5 0.0 8 4.336981746944922E-5 0.0 0.0 1.7347926987779688E-4 0.0 9 4.336981746944922E-5 0.0 0.0 2.602189048166953E-4 0.0 10 4.336981746944922E-5 0.0 0.0 3.4695853975559376E-4 0.0 11 4.336981746944922E-5 0.0 0.0 5.204378096333906E-4 0.0 12 4.336981746944922E-5 0.0 0.0 9.541359843278827E-4 0.0 13 4.336981746944922E-5 0.0 0.0 9.541359843278827E-4 0.0 14 4.336981746944922E-5 0.0 0.0 0.0012577247066140273 0.0 15 4.336981746944922E-5 0.0 0.0 0.0019516417861252147 0.0 16 4.336981746944922E-5 0.0 0.0 0.002862407952983648 0.0 17 4.336981746944922E-5 0.0 0.0 0.0047273101041699645 0.0 18 4.336981746944922E-5 0.0 0.0 0.005507966818620051 0.0 19 4.336981746944922E-5 0.0 0.0 0.006548842437886832 0.0 20 4.336981746944922E-5 0.0 0.0 0.007980046414378656 0.0 21 4.336981746944922E-5 0.0 0.0 0.010885824184831753 0.0 22 4.336981746944922E-5 0.0 0.0 0.016784119360676846 0.0 23 4.336981746944922E-5 0.0 0.0 0.026802547196119617 0.0 24 4.336981746944922E-5 0.0 0.0 0.04120132659597676 0.0 25 4.336981746944922E-5 0.0 0.0 0.049441591915172105 0.0 26 4.336981746944922E-5 0.0 0.0 0.061324921901801194 0.0 27 4.336981746944922E-5 0.0 0.0 0.14650324341179946 0.0 28 4.336981746944922E-5 0.0 0.0 0.22886252678628352 0.0 29 4.336981746944922E-5 0.0 0.0 0.32414601576666346 0.0 30 4.336981746944922E-5 0.0 0.0 0.5100724232581922 0.0 31 4.336981746944922E-5 0.0 0.0 0.7506014309437576 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8400 0.0 29.159523 1 GTATTGG 755 0.0 23.52318 1 ATTGGAC 820 0.0 21.884146 3 CGCGATA 60 3.7283808E-5 21.583332 14 TAGGTCG 95 7.1540853E-9 21.421053 21 TTGGACC 1540 0.0 20.301947 4 TGCGCGA 65 6.905982E-5 19.923077 12 TATTGGA 995 0.0 19.708542 2 GGACCCT 1720 0.0 18.177324 6 ACCGACC 235 0.0 18.106384 8 TGGACCC 1750 0.0 18.077143 5 GTATCAA 14605 0.0 17.366312 2 CGAATTA 160 3.45608E-11 17.34375 15 CTGTGCG 140 1.87174E-9 17.178572 9 GTAATAC 155 4.0199666E-10 16.709679 3 CGACCGC 200 0.0 16.65 10 CGTCTGT 795 0.0 16.522013 34 CCGACAC 90 4.4490804E-5 16.444445 33 GACCCTC 1895 0.0 16.401056 7 CCGTCGA 80 3.3844108E-4 16.1875 9 >>END_MODULE