##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088259_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1551245 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.93678625877924 31.0 30.0 31.0 27.0 34.0 2 30.632306308803575 31.0 30.0 33.0 27.0 34.0 3 30.619123993953245 31.0 30.0 34.0 27.0 34.0 4 34.747756157151194 35.0 35.0 37.0 32.0 37.0 5 34.60452152948116 35.0 35.0 37.0 32.0 37.0 6 34.726805243530194 35.0 35.0 37.0 31.0 37.0 7 34.37528694693617 35.0 35.0 37.0 30.0 37.0 8 34.588369342044615 35.0 35.0 37.0 30.0 37.0 9 35.93534419127862 37.0 35.0 39.0 30.0 39.0 10 35.827445052200005 37.0 35.0 39.0 30.0 39.0 11 35.95068799577114 37.0 35.0 39.0 30.0 39.0 12 35.677826519988784 37.0 35.0 39.0 30.0 39.0 13 35.86087561926066 37.0 35.0 39.0 30.0 39.0 14 36.67291691512301 38.0 36.0 40.0 31.0 41.0 15 36.723424733037014 38.0 36.0 40.0 31.0 41.0 16 36.60227236832351 38.0 35.0 40.0 30.0 41.0 17 36.73042427211691 38.0 36.0 40.0 31.0 41.0 18 36.73038301493317 38.0 36.0 40.0 31.0 41.0 19 36.81973382670049 39.0 36.0 40.0 31.0 41.0 20 36.79391778861495 39.0 36.0 40.0 31.0 41.0 21 36.72258347327469 38.0 35.0 40.0 30.0 41.0 22 36.63088744846881 38.0 35.0 40.0 30.0 41.0 23 36.49207636446854 38.0 35.0 40.0 30.0 41.0 24 36.41867145421903 38.0 35.0 40.0 30.0 41.0 25 36.328432968357674 38.0 35.0 40.0 30.0 41.0 26 36.040377245373875 38.0 34.0 40.0 29.0 41.0 27 35.86672511434364 38.0 34.0 40.0 29.0 41.0 28 35.67937108580527 38.0 34.0 40.0 27.0 41.0 29 35.49187716962827 38.0 34.0 40.0 27.0 41.0 30 35.31057892209161 38.0 34.0 40.0 27.0 41.0 31 35.01758265135423 37.0 33.0 40.0 26.0 41.0 32 34.80831203323782 37.0 33.0 40.0 26.0 41.0 33 34.93269148329245 37.0 33.0 40.0 26.0 41.0 34 34.90960164255163 37.0 33.0 40.0 26.0 41.0 35 34.792309403092354 37.0 33.0 40.0 25.0 41.0 36 34.69271842939059 37.0 33.0 40.0 25.0 41.0 37 34.516428417174595 37.0 33.0 40.0 24.0 41.0 38 34.371856798893795 37.0 33.0 40.0 24.0 41.0 39 34.303590986594635 37.0 33.0 40.0 24.0 41.0 40 34.11461567966376 37.0 33.0 40.0 23.0 41.0 41 33.92944763722043 37.0 33.0 40.0 22.0 41.0 42 33.69154453358431 37.0 32.0 40.0 21.0 41.0 43 33.32774964625188 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 6.0 15 6.0 16 28.0 17 80.0 18 178.0 19 448.0 20 869.0 21 1676.0 22 3229.0 23 5353.0 24 8753.0 25 13282.0 26 19702.0 27 27646.0 28 37327.0 29 49203.0 30 61967.0 31 74089.0 32 89306.0 33 105961.0 34 124716.0 35 145764.0 36 174487.0 37 211725.0 38 237081.0 39 158362.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.00602419347041 25.738229615566848 14.170553329744816 21.085192861217923 2 18.90584659418725 24.05158437255237 34.65977327888245 22.382795754377934 3 21.084161431624278 26.31234911313171 32.44013679334986 20.16335266189416 4 13.826055845466062 16.56972302892193 34.71914494486686 34.885076180745145 5 10.981953205328624 41.3015996828354 34.4186121470174 13.29783496481858 6 31.896895719244867 36.2025340935829 14.647589516807468 17.25298067036477 7 23.937289080706144 36.03041428014272 21.117811822117076 18.91448481703406 8 28.08466747676866 33.66180068267746 19.9852376639409 18.26829417661298 9 24.867638574177516 13.451904760369896 23.93361461277877 37.74684205267382 10 16.655976328690826 28.208890278453758 33.496449625945615 21.638683766909807 11 31.430044899419496 21.514654358273518 24.966204564720595 22.08909617758639 12 19.983819448249633 27.806117022133837 31.69918355901228 20.510879970604257 13 31.426692753240136 20.4295904257548 29.413793436884568 18.729923384120497 14 20.776279697920057 22.591982568839867 28.802413545249138 27.829324187990935 15 23.30605416939297 28.889633810262076 27.073802010643067 20.730510009701884 16 21.704566332204134 28.0960776666484 27.64882400910237 22.5505319920451 17 19.149779693085232 26.996896041566615 28.472227146582263 25.381097118765894 18 20.3033047648824 25.669832940638003 33.214547025131424 20.81231526934817 19 19.54952312497381 24.136741778378013 34.767557671418764 21.546177425229413 20 24.137644279272454 23.21799586783519 33.371968966862106 19.27239088603025 21 23.86328400736183 23.91382405745063 31.91159359095436 20.31129834423318 22 21.8217625197825 23.681623470180405 32.93328906781327 21.563324942223826 23 20.89740821082421 26.070285480372217 33.93139059271746 19.10091571608611 24 19.416146385645078 24.829733536610917 32.34672795077502 23.407392126968983 25 20.627882765133812 25.908222105470124 33.504120883548374 19.95977424584769 26 22.072270982339994 24.863448391453318 32.094543415127845 20.969737211078844 27 20.869495147446084 26.37868292887326 31.64129457306873 21.110527350611928 28 20.671654058514292 25.83389471037779 31.89083607038218 21.603615160725738 29 19.66368948812083 25.670799905882046 32.67987970952364 21.985630896473477 30 18.90984338386264 26.006723631663597 34.71901601616766 20.364416968306102 31 20.45872831177538 25.355633700672687 33.457642087484565 20.727995900067363 32 21.400939245573717 25.8277705971655 31.237232029756747 21.53405812750404 33 22.447195639631392 25.789478773501283 30.658793420768482 21.104532166098842 34 20.811541697152933 28.790938891019795 30.74072760911397 19.656791802713304 35 19.371601520069365 29.961547015461775 30.85418486441536 19.812666600053504 36 20.595972912080295 25.94316178295498 33.10953459962804 20.351330705336682 37 20.461758136206722 26.547901846581297 32.148564540095215 20.841775477116766 38 20.960518809085606 25.929366412139927 32.56751834816551 20.54259643060896 39 21.980473748505233 25.63669826494203 32.20703370518519 20.175794281367544 40 20.125447624327556 26.64801498151485 31.237425422805554 21.98911197135204 41 21.29173663734613 26.148158414692713 31.021792173383318 21.53831277457784 42 18.74958501074943 28.006020970252926 31.26901295411105 21.97538106488659 43 19.53630793330518 27.67441635589478 30.83987377880348 21.949401931996558 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 87.0 1 137.5 2 188.0 3 491.0 4 794.0 5 794.0 6 1562.5 7 2331.0 8 2685.5 9 3040.0 10 4835.5 11 6631.0 12 6631.0 13 12982.5 14 19334.0 15 32456.0 16 45578.0 17 42915.0 18 40252.0 19 40252.0 20 44310.0 21 48368.0 22 38416.5 23 28465.0 24 30165.5 25 31866.0 26 31866.0 27 34330.0 28 36794.0 29 38241.5 30 39689.0 31 42443.0 32 45197.0 33 45197.0 34 49432.5 35 53668.0 36 58951.5 37 64235.0 38 67347.5 39 70460.0 40 70460.0 41 74290.0 42 78120.0 43 89544.5 44 100969.0 45 128149.5 46 155330.0 47 155330.0 48 159690.0 49 164050.0 50 149183.0 51 134316.0 52 125741.0 53 117166.0 54 117166.0 55 99550.0 56 81934.0 57 67102.0 58 52270.0 59 45582.5 60 38895.0 61 38895.0 62 34071.5 63 29248.0 64 25277.5 65 21307.0 66 17927.0 67 14547.0 68 14547.0 69 12326.5 70 10106.0 71 8493.5 72 6881.0 73 5486.5 74 4092.0 75 4092.0 76 3124.0 77 2156.0 78 1680.5 79 1205.0 80 975.0 81 745.0 82 745.0 83 561.5 84 378.0 85 301.0 86 224.0 87 191.5 88 159.0 89 159.0 90 141.0 91 123.0 92 77.5 93 32.0 94 22.0 95 12.0 96 12.0 97 7.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1551245.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.917903150859054 #Duplication Level Percentage of deduplicated Percentage of total 1 78.21783381323347 35.1338108389281 2 12.135550337166267 10.902069494544186 3 3.8703658979675497 5.2154616168988195 4 1.7446273764623654 3.134600141210954 5 0.9048268908818071 2.032146332646096 6 0.5650185524911269 1.522766917154101 7 0.4026542810947888 1.2660470201046148 8 0.26765582551206074 0.961803075849118 9 0.2044054269979556 0.8263316856063744 >10 1.4455265179843866 12.566472253837556 >50 0.15054603412190587 4.644059678809953 >100 0.07560656064384272 6.222396195813378 >500 0.006385182636562026 1.969009073693185 >1k 0.007546124934118758 6.196443591033464 >5k 8.707067231675489E-4 2.638512572746474 >10k+ 5.80471148778366E-4 4.76806951112355 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 23526 1.5165882887616076 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 21646 1.3953953115078532 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 17159 1.1061437748389196 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10817 0.6973108696563083 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7833 0.504949250440775 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7061 0.455182772547212 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7042 0.45395794990475397 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 6869 0.4428056174234244 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 6553 0.42243488294885717 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5120 0.3300574699676711 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4953 0.31929192358395997 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 4442 0.2863506409367959 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4316 0.27822813288681025 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3735 0.24077434576743198 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3491 0.22504504446428514 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3266 0.21054056580359645 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2901 0.18701107819847929 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2777 0.17901749884769977 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2581 0.16638248632549985 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2542 0.16386837669098048 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 2486 0.16025837311320906 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2391 0.1541342599009183 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2292 0.14775228929021528 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2160 0.13924299514261126 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2009 0.1295088783525491 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 1969 0.12693030436842664 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1966 0.12673691131961745 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 1735 0.11184564656131044 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1732 0.11165225351250124 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 1725 0.11120100306527983 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 1648 0.10623724814584415 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 1637 0.10552814030021047 No Hit CGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAG 1563 0.10075777842958399 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 6.446434960306077E-5 6.446434960306077E-5 0.0 7 0.0 0.0 6.446434960306077E-5 6.446434960306077E-5 0.0 8 0.0 0.0 6.446434960306077E-5 6.446434960306077E-5 0.0 9 0.0 0.0 6.446434960306077E-5 6.446434960306077E-5 0.0 10 0.0 0.0 6.446434960306077E-5 6.446434960306077E-5 0.0 11 0.0 0.0 6.446434960306077E-5 6.446434960306077E-5 0.0 12 0.0 0.0 6.446434960306077E-5 2.578573984122431E-4 0.0 13 0.0 0.0 6.446434960306077E-5 3.223217480153038E-4 0.0 14 0.0 0.0 6.446434960306077E-5 4.5125044722142536E-4 0.0 15 0.0 0.0 6.446434960306077E-5 5.80179146427547E-4 0.0 16 0.0 0.0 6.446434960306077E-5 0.0012248226424581546 0.0 17 0.0 0.0 6.446434960306077E-5 0.0017405374392826408 0.0 18 0.0 0.0 6.446434960306077E-5 0.0021273235369010054 0.0 19 0.0 0.0 6.446434960306077E-5 0.0027075026833285522 0.0 20 0.0 0.0 6.446434960306077E-5 0.003867860976183646 0.0 21 0.0 0.0 6.446434960306077E-5 0.006059648862687712 0.0 22 0.0 6.446434960306077E-5 6.446434960306077E-5 0.010314295936489722 0.0 23 0.0 6.446434960306077E-5 6.446434960306077E-5 0.01953269792972741 0.0 24 0.0 6.446434960306077E-5 6.446434960306077E-5 0.03113628085827835 0.0 25 0.0 6.446434960306077E-5 6.446434960306077E-5 0.036615750574538516 0.0 26 0.0 6.446434960306077E-5 6.446434960306077E-5 0.04112825504675277 0.0 27 0.0 6.446434960306077E-5 6.446434960306077E-5 0.0757456107835964 0.0 28 0.0 6.446434960306077E-5 6.446434960306077E-5 0.1176474380255859 0.0 29 0.0 6.446434960306077E-5 6.446434960306077E-5 0.16734945156954575 0.0 30 0.0 6.446434960306077E-5 6.446434960306077E-5 0.2698477674384124 0.0 31 0.0 6.446434960306077E-5 6.446434960306077E-5 0.3969714648556482 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5095 0.0 29.629047 1 ACGAACG 45 0.0038264028 20.555555 15 GTATTGG 645 0.0 18.643412 1 ATTGGAC 685 0.0 18.635036 3 CGAACGA 50 0.0070359646 18.5 16 GACGGTT 60 9.238799E-4 18.5 32 TTCGCGG 60 9.238799E-4 18.5 32 GCGTCCG 50 0.0070359646 18.5 11 GTGCGAA 60 9.238799E-4 18.5 13 ATCGACC 50 0.0070359646 18.5 7 ACGGTTT 60 9.238799E-4 18.5 33 GTATCAA 8730 0.0 17.652348 2 CCGATAA 65 0.0015802702 17.076923 9 ACGGTGT 120 1.04186256E-7 16.958334 29 AAGACCG 100 5.8804562E-6 16.650002 5 TATACTG 145 2.9813236E-9 16.586206 5 ACCGACC 180 1.0913936E-11 16.444445 8 CTGACCG 90 4.4475702E-5 16.444445 9 CGGTTTA 80 3.383519E-4 16.1875 15 CCCGTAT 80 3.383519E-4 16.1875 1 >>END_MODULE