##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088258_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2621813 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.121369449308553 31.0 31.0 33.0 27.0 34.0 2 30.902795889714483 31.0 31.0 34.0 27.0 34.0 3 30.927875863000146 31.0 31.0 34.0 27.0 34.0 4 35.06982572746416 35.0 35.0 37.0 32.0 37.0 5 34.96355804170626 35.0 35.0 37.0 32.0 37.0 6 35.060854454532034 36.0 35.0 37.0 32.0 37.0 7 34.7194128643042 35.0 35.0 37.0 31.0 37.0 8 34.91445156462341 36.0 35.0 37.0 32.0 37.0 9 36.35421710091452 38.0 35.0 39.0 32.0 39.0 10 36.27989639230563 38.0 35.0 39.0 32.0 39.0 11 36.363438200970094 38.0 35.0 39.0 32.0 39.0 12 36.119455887967604 38.0 35.0 39.0 31.0 39.0 13 36.28564012765212 38.0 35.0 39.0 32.0 39.0 14 37.21257618296957 39.0 36.0 40.0 32.0 41.0 15 37.24330339349145 39.0 36.0 40.0 32.0 41.0 16 37.15679150267391 39.0 36.0 40.0 31.0 41.0 17 37.25192910402077 39.0 36.0 40.0 32.0 41.0 18 37.25472449789516 39.0 36.0 40.0 32.0 41.0 19 37.33434039727471 39.0 36.0 40.0 32.0 41.0 20 37.300310891737894 39.0 36.0 40.0 31.0 41.0 21 37.24114038644251 39.0 36.0 40.0 31.0 41.0 22 37.15669843730274 39.0 36.0 40.0 31.0 41.0 23 37.05230922266386 39.0 36.0 40.0 31.0 41.0 24 36.975851443257014 39.0 36.0 40.0 31.0 41.0 25 36.893441675664896 39.0 35.0 40.0 31.0 41.0 26 36.64826438803988 38.0 35.0 40.0 30.0 41.0 27 36.49697938029905 38.0 35.0 40.0 30.0 41.0 28 36.336857357866485 38.0 35.0 40.0 30.0 41.0 29 36.162775911172915 38.0 35.0 40.0 30.0 41.0 30 36.008211874759944 38.0 35.0 40.0 30.0 41.0 31 35.75897708951783 38.0 34.0 40.0 29.0 41.0 32 35.565361450263616 38.0 34.0 40.0 28.0 41.0 33 35.67947599619042 38.0 34.0 40.0 29.0 41.0 34 35.6719079507196 38.0 34.0 40.0 29.0 41.0 35 35.556912716505714 38.0 34.0 40.0 27.0 41.0 36 35.47449608343539 38.0 34.0 40.0 27.0 41.0 37 35.31814702269003 38.0 34.0 40.0 27.0 41.0 38 35.193847921266695 38.0 34.0 40.0 26.0 41.0 39 35.14761350256483 38.0 34.0 40.0 25.0 41.0 40 34.98022170154775 38.0 33.0 40.0 25.0 41.0 41 34.8185560907662 38.0 33.0 40.0 24.0 41.0 42 34.626071348337966 38.0 33.0 40.0 23.0 41.0 43 34.29199756046675 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 3.0 15 10.0 16 31.0 17 61.0 18 200.0 19 461.0 20 949.0 21 1859.0 22 3325.0 23 6054.0 24 9959.0 25 16215.0 26 24522.0 27 35517.0 28 49843.0 29 66924.0 30 86572.0 31 107582.0 32 131517.0 33 160377.0 34 195159.0 35 234246.0 36 285417.0 37 358827.0 38 424595.0 39 421586.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.661638720991924 24.752299267720467 13.489901835104181 22.096160176183428 2 17.891665042472518 22.79796461456252 36.35675008095543 22.953620262009533 3 19.768152801134175 26.599151045478838 32.11552463886631 21.517171514520676 4 12.93192916504724 15.699060154175756 35.42613451073742 35.94287617003959 5 11.180354968107947 40.50395661322909 34.855727696826584 13.459960721836378 6 31.732736087585195 35.89977622355217 15.336067065042396 17.031420623820235 7 24.397239620064436 35.243512790576595 21.54924855434007 18.809999035018897 8 27.666275207270697 33.71712627864763 20.112914231487906 18.503684282593763 9 24.990340653585896 13.741216478825912 23.66530336068972 37.60313950689847 10 16.387476910061853 27.6352661307271 33.69393621894468 22.283320740266372 11 31.283466822385886 21.699449960771418 25.22262266607115 21.794460550771547 12 20.072064636188774 27.24439157178639 31.920506916397162 20.763036875627666 13 31.090203611012683 20.830966968277295 28.88054945184878 19.198279968861243 14 20.909271561320352 22.422766230848655 28.201057817624676 28.46690439020632 15 22.995842952948973 28.91411401194517 26.82212652084645 21.267916514259408 16 22.010913821847705 28.40801384385538 26.90874597082248 22.672326363474436 17 19.2750970416273 26.99811161207912 27.891539175372156 25.835252170921418 18 20.652655242765217 26.412333755305966 32.255542252632054 20.679468749296763 19 19.766283865401537 24.681432276062402 33.51680688134508 22.035476977190974 20 24.47325572037365 23.633684019417096 32.206988065128975 19.686072195080275 21 23.79078904559555 24.61277749404706 30.843580377395334 20.75285308296206 22 22.032578219728105 24.097294505748504 31.927257969962007 21.942869304561384 23 20.971632988317626 26.35897373306182 33.0848157362863 19.584577542334255 24 19.67958813233438 25.25496669670949 31.29243008559344 23.773015085362687 25 20.872274262123195 26.258852175956104 32.574939555185665 20.293934006735036 26 22.52311663722775 25.196915264360957 31.004690265858017 21.275277832553275 27 20.888217428168982 26.785625061741626 30.6602339678688 21.665923542220593 28 20.724170640697867 26.140460818525195 30.86009566662458 22.275272874152353 29 19.739813632780066 26.129628619585 31.846207185638338 22.284350561996604 30 19.08461816308028 26.332045801893578 33.80679705226879 20.77653898275735 31 20.608830606912086 25.6412642701825 32.711448146759516 21.0384569761459 32 21.720923650924 25.915006142695912 30.458427050289245 21.905643156090843 33 22.704136412474877 25.8183936077821 30.119882691862465 21.357587287880563 34 20.843210404403365 28.75269899111798 30.11095757020047 20.29313303427819 35 19.50264950246261 29.87020813459999 30.20741753893203 20.41972482400537 36 20.55505102766673 25.97153191322188 32.59812961488863 20.875287444222757 37 20.6243160744111 26.383346180677265 31.57296115321726 21.419376591694373 38 20.85568268980282 25.909017920042356 32.234411836389555 21.000887553765278 39 21.971284756006625 25.201377825191955 32.148555217324805 20.67878220147661 40 20.16333735472362 26.106247852154212 31.174877842164943 22.55553695095722 41 21.27653650355689 25.670556977175718 30.967807391297548 22.085099127969844 42 18.586680285741203 27.384332902461004 31.659084763100953 22.369902048696837 43 19.346650581105518 27.258999783737437 31.101531650045217 22.292817985111828 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 152.0 1 263.0 2 374.0 3 1011.5 4 1649.0 5 1649.0 6 2973.5 7 4298.0 8 4896.0 9 5494.0 10 8194.0 11 10894.0 12 10894.0 13 20105.0 14 29316.0 15 47950.5 16 66585.0 17 64826.0 18 63067.0 19 63067.0 20 66916.0 21 70765.0 22 57036.5 23 43308.0 24 47689.0 25 52070.0 26 52070.0 27 56890.5 28 61711.0 29 65725.5 30 69740.0 31 74656.0 32 79572.0 33 79572.0 34 85895.5 35 92219.0 36 100428.0 37 108637.0 38 114130.0 39 119623.0 40 119623.0 41 127232.5 42 134842.0 43 154387.0 44 173932.0 45 220268.0 46 266604.0 47 266604.0 48 271915.5 49 277227.0 50 253264.5 51 229302.0 52 214458.5 53 199615.0 54 199615.0 55 171357.0 56 143099.0 57 116284.5 58 89470.0 59 77987.5 60 66505.0 61 66505.0 62 58408.0 63 50311.0 64 43824.0 65 37337.0 66 31897.0 67 26457.0 68 26457.0 69 22328.5 70 18200.0 71 15374.0 72 12548.0 73 9961.0 74 7374.0 75 7374.0 76 5843.5 77 4313.0 78 3328.5 79 2344.0 80 1828.0 81 1312.0 82 1312.0 83 993.0 84 674.0 85 526.5 86 379.0 87 314.5 88 250.0 89 250.0 90 219.5 91 189.0 92 113.5 93 38.0 94 25.5 95 13.0 96 13.0 97 8.0 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2621813.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.842815132103254 #Duplication Level Percentage of deduplicated Percentage of total 1 74.32710604689358 31.843824636712952 2 13.737192364657844 11.770799858263526 3 4.981259305836795 6.402335146951042 4 2.2144188816316155 3.794877550831286 5 1.2643828245290396 2.708485980375209 6 0.7356343080908863 1.8909986799822316 7 0.46539085726098417 1.3957058123262376 8 0.34550564082003876 1.184194743740143 9 0.23609485397788438 0.9103471364353872 >10 1.450738721527796 11.91039214762944 >50 0.14991193155984647 4.4729653023355835 >100 0.07825136661169942 6.272509895851696 >500 0.006112592158756278 1.8231129950880196 >1k 0.006562047464547065 5.615452986475754 >5k 6.292374281072528E-4 1.807862298071691 >10k+ 8.090195504236109E-4 6.1961348289299 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 32696 1.2470759737631936 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 29709 1.1331471771632835 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 26823 1.0230706766653457 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 18503 0.7057330175721915 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11380 0.4340507885192422 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10812 0.4123863906388442 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10542 0.4020881733365423 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10373 0.3956422521362126 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10051 0.38336067446457855 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7617 0.29052415256160524 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7504 0.28621415791286414 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7150 0.27271205078317945 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7043 0.26863090540782275 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6304 0.24044430323596688 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5690 0.2170253942596211 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5635 0.21492760925359666 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4693 0.1789982733322323 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4197 0.16008006673244812 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3985 0.15199405907286295 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3908 0.14905716006442868 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3899 0.14871388615435197 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3736 0.14249681422740676 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3679 0.14032274613025414 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3370 0.1285370085509531 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3177 0.12117569025708547 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2974 0.11343295650757701 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2930 0.11175472850275744 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2758 0.1051943826657355 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2749 0.10485110875565877 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2706 0.10321102229640328 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2678 0.10214305902060902 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.814154556408104E-5 0.0 3 3.814154556408104E-5 0.0 0.0 3.814154556408104E-5 0.0 4 3.814154556408104E-5 0.0 0.0 7.628309112816208E-5 0.0 5 3.814154556408104E-5 0.0 0.0 7.628309112816208E-5 0.0 6 7.628309112816208E-5 0.0 0.0 7.628309112816208E-5 0.0 7 7.628309112816208E-5 0.0 0.0 7.628309112816208E-5 0.0 8 7.628309112816208E-5 0.0 0.0 1.1442463669224312E-4 0.0 9 7.628309112816208E-5 0.0 0.0 1.9070772782040518E-4 0.0 10 7.628309112816208E-5 0.0 0.0 3.4327391007672937E-4 0.0 11 7.628309112816208E-5 0.0 0.0 4.195570012048914E-4 0.0 12 7.628309112816208E-5 0.0 0.0 6.102647290252966E-4 0.0 13 1.1442463669224312E-4 0.0 0.0 8.009724568457018E-4 0.0 14 1.5256618225632416E-4 0.0 0.0 9.91680184666107E-4 0.0 15 1.5256618225632416E-4 0.0 0.0 0.0013349540947428364 0.0 16 1.5256618225632416E-4 0.0 0.0 0.0025554835527934294 0.0 17 1.5256618225632416E-4 0.0 0.0 0.003928579193100347 0.0 18 1.5256618225632416E-4 0.0 0.0 0.004653268558817886 0.0 19 1.5256618225632416E-4 0.0 0.0 0.005797514925740318 0.0 20 1.5256618225632416E-4 0.0 0.0 0.007132469020483154 0.0 21 1.5256618225632416E-4 0.0 0.0 0.009802377209968826 0.0 22 1.5256618225632416E-4 0.0 0.0 0.017011129321580144 0.0 23 1.5256618225632416E-4 0.0 0.0 0.02765262053395875 0.0 24 1.9070772782040518E-4 0.0 0.0 0.04496888222005154 0.0 25 1.9070772782040518E-4 0.0 0.0 0.051758077330457966 0.0 26 1.9070772782040518E-4 0.0 0.0 0.060950189811401496 0.0 27 1.9070772782040518E-4 0.0 0.0 0.12666807281831313 0.0 28 1.9070772782040518E-4 0.0 0.0 0.1931106451909423 0.0 29 2.2884927338448624E-4 0.0 0.0 0.272979041602128 0.0 30 2.2884927338448624E-4 0.0 0.0 0.42493495912942686 0.0 31 2.2884927338448624E-4 0.0 0.0 0.6243771008840066 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7245 0.0 29.620428 1 GTATTGG 1190 0.0 19.743698 1 ATTGGAC 1200 0.0 19.116667 3 ATATCGT 50 0.007037227 18.5 6 CGTCTGT 720 0.0 18.243057 34 GTATCAA 12690 0.0 17.464931 2 ACGTTTA 140 1.873559E-9 17.178572 26 TTGGACC 1955 0.0 17.033247 4 CAATGCG 165 5.4569682E-11 16.818182 19 TGGACCC 2010 0.0 16.659204 5 GGACCCT 2055 0.0 16.38443 6 TATTGGA 1585 0.0 16.223974 2 CGCGAAT 70 0.0025936812 15.857143 35 CTAGGTT 140 3.4784534E-8 15.857143 4 TATACCG 145 5.3536496E-8 15.310345 5 TGCGACG 185 3.0559022E-10 15.0 22 CTTGCGA 150 8.1132384E-8 14.8 10 CGCGCAA 125 2.9620624E-6 14.799999 21 GTACTAG 315 0.0 14.68254 1 TATACTG 355 0.0 14.59155 5 >>END_MODULE