##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088257_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1662240 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.87898257772644 31.0 30.0 31.0 27.0 34.0 2 30.648194604870536 31.0 30.0 34.0 27.0 34.0 3 30.682831600731543 31.0 30.0 34.0 27.0 34.0 4 34.82321866878429 35.0 35.0 37.0 32.0 37.0 5 34.688410819135626 35.0 35.0 37.0 32.0 37.0 6 34.79772535855231 35.0 35.0 37.0 32.0 37.0 7 34.44451282606603 35.0 35.0 37.0 30.0 37.0 8 34.65184570218501 35.0 35.0 37.0 30.0 37.0 9 36.027715612667244 37.0 35.0 39.0 30.0 39.0 10 35.92683908460872 37.0 35.0 39.0 30.0 39.0 11 36.04398522475695 37.0 35.0 39.0 30.0 39.0 12 35.76942499278083 37.0 35.0 39.0 30.0 39.0 13 35.94282113292906 37.0 35.0 39.0 30.0 39.0 14 36.7878976561748 38.0 36.0 40.0 31.0 41.0 15 36.83298019539898 38.0 36.0 40.0 31.0 41.0 16 36.72502225912022 38.0 36.0 40.0 31.0 41.0 17 36.83707587352007 38.0 36.0 40.0 31.0 41.0 18 36.84053506112234 38.0 36.0 40.0 31.0 41.0 19 36.91824225141977 39.0 36.0 40.0 31.0 41.0 20 36.898952618153814 39.0 36.0 40.0 31.0 41.0 21 36.83584259794013 39.0 36.0 40.0 31.0 41.0 22 36.74324225141977 39.0 35.0 40.0 30.0 41.0 23 36.60827557994032 38.0 35.0 40.0 30.0 41.0 24 36.53971628645683 38.0 35.0 40.0 30.0 41.0 25 36.45223613918568 38.0 35.0 40.0 30.0 41.0 26 36.17710920204062 38.0 35.0 40.0 30.0 41.0 27 36.01443052748099 38.0 34.0 40.0 29.0 41.0 28 35.859820483203386 38.0 34.0 40.0 29.0 41.0 29 35.669047790932716 38.0 34.0 40.0 27.0 41.0 30 35.50489279526422 38.0 34.0 40.0 27.0 41.0 31 35.2400038502262 38.0 34.0 40.0 27.0 41.0 32 35.028571686399076 37.0 33.0 40.0 26.0 41.0 33 35.17597579170276 37.0 33.0 40.0 27.0 41.0 34 35.157116300895176 38.0 33.0 40.0 27.0 41.0 35 35.061267927615745 38.0 33.0 40.0 26.0 41.0 36 34.9742540186736 38.0 33.0 40.0 25.0 41.0 37 34.819277601309075 38.0 33.0 40.0 25.0 41.0 38 34.69701306670517 37.0 33.0 40.0 25.0 41.0 39 34.65841755703148 38.0 33.0 40.0 24.0 41.0 40 34.501337953604775 38.0 33.0 40.0 24.0 41.0 41 34.337632953123496 38.0 33.0 40.0 23.0 41.0 42 34.12178024833959 37.0 33.0 40.0 22.0 41.0 43 33.777119429203964 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 2.0 15 10.0 16 17.0 17 80.0 18 173.0 19 358.0 20 792.0 21 1661.0 22 2991.0 23 5139.0 24 8390.0 25 12879.0 26 19379.0 27 27587.0 28 37330.0 29 49643.0 30 62867.0 31 76803.0 32 91978.0 33 110132.0 34 130610.0 35 154448.0 36 186232.0 37 228740.0 38 262842.0 39 191156.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.88884878236596 25.61098277023775 13.786035710848013 21.714132736548272 2 18.610910578496487 23.754812782750985 35.196602175377805 22.437674463374723 3 20.54691259986524 26.404791125228606 32.47286793724131 20.57542833766484 4 13.46670757532005 16.731037635961112 35.33111945326788 34.47113533545096 5 11.04226826451054 41.01856530946193 34.86012850129946 13.079037924728079 6 31.743129752622966 36.664861873135045 14.923837712965637 16.66817066127635 7 24.180623736644527 35.669337761093466 21.436194532678794 18.713843969583213 8 27.670733468091253 34.119260756569446 20.03338868033497 18.17661709500433 9 24.81013572047358 13.614820964481664 23.79403696217153 37.781006352873234 10 16.037275002406393 28.380979882568102 34.13700789296371 21.444737222061796 11 31.303421888535954 21.70763547983444 25.174042256232553 21.814900375397052 12 19.90440610260853 27.782630667051688 32.04314659736259 20.269816632977186 13 31.278876696505918 20.643408894022524 29.10295745500048 18.974756954471076 14 20.694484550967367 22.7559798825681 28.746029454230438 27.803506112234093 15 23.144912888632206 29.164380594859946 26.831745115025505 20.858961401482336 16 21.60458176917894 28.62619116373087 27.56028010395611 22.208946963134085 17 19.193076812012706 27.436651747040138 28.235633843488305 25.134637597458852 18 20.32522379439792 26.243141784579844 32.72253104244874 20.70910337857349 19 19.561615651169507 24.835462989700645 34.30882423717394 21.294097121955915 20 24.079254499951873 23.747352969486958 32.86691452497834 19.30647800558283 21 23.6246270093368 24.433776109346425 31.67196072769275 20.269636153624027 22 21.688985946674364 24.250168447396284 32.54860910578496 21.512236500144382 23 20.97079844065839 26.363160554432575 33.45623977283665 19.209801232072383 24 19.58423573009914 25.269455674270862 31.88239965347964 23.26390894215035 25 20.834476369236693 26.189659736259507 33.061230628549424 19.91463326595437 26 21.919518240446624 25.355905284435458 31.611139185677157 21.113437289440753 27 20.876588218307827 26.709801232072383 31.335246414476853 21.07836413514294 28 20.647138800654538 26.240675233419964 31.50062566175763 21.61156030416787 29 19.65516411589181 26.13052266820676 32.44038165367215 21.773931562229283 30 19.16546347097892 26.349985561651746 34.256304745403796 20.22824622196554 31 20.58138415631918 25.855833092694198 32.88995572239869 20.67282702858793 32 21.54658773702955 26.259986524208294 30.921888535951485 21.271537202810663 33 22.46931850996246 26.103210126094904 30.442415054384448 20.985056309558185 34 20.822263933006063 28.855640581384158 30.603522956973723 19.71857252863606 35 19.393408894022524 30.009084127442488 30.701763884878236 19.895743093656755 36 20.67571469823852 26.327305322937722 32.76801183944556 20.22896813937819 37 20.613329001828856 26.894251131003948 31.837941572817403 20.654478294349794 38 21.005871594956204 26.451715757050724 32.20750312830879 20.33490951968428 39 21.956937626335545 26.027288478198095 32.007291365867744 20.008482529598616 40 20.189082202329388 26.95711810568871 30.987402541149294 21.86639715083261 41 21.336690249302144 26.406415439407066 30.934341611319667 21.322552699971123 42 18.835126094908077 28.179203965732984 31.19669843103282 21.788971508326114 43 19.531475599191452 27.979653960920203 30.830626143035904 21.65824429685244 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 91.0 1 138.5 2 186.0 3 468.0 4 750.0 5 750.0 6 1556.0 7 2362.0 8 2648.5 9 2935.0 10 4713.5 11 6492.0 12 6492.0 13 12546.0 14 18600.0 15 31120.0 16 43640.0 17 41737.5 18 39835.0 19 39835.0 20 44266.0 21 48697.0 22 40146.0 23 31595.0 24 34320.5 25 37046.0 26 37046.0 27 40701.5 28 44357.0 29 46435.5 30 48514.0 31 52220.5 32 55927.0 33 55927.0 34 60080.5 35 64234.0 36 69404.5 37 74575.0 38 76787.5 39 79000.0 40 79000.0 41 82717.0 42 86434.0 43 97436.5 44 108439.0 45 134823.0 46 161207.0 47 161207.0 48 164380.0 49 167553.0 50 153221.5 51 138890.0 52 129667.0 53 120444.0 54 120444.0 55 103627.5 56 86811.0 57 71430.5 58 56050.0 59 48790.0 60 41530.0 61 41530.0 62 36115.0 63 30700.0 64 26615.5 65 22531.0 66 18765.5 67 15000.0 68 15000.0 69 12760.0 70 10520.0 71 8783.0 72 7046.0 73 5735.5 74 4425.0 75 4425.0 76 3514.5 77 2604.0 78 1997.0 79 1390.0 80 1122.5 81 855.0 82 855.0 83 656.0 84 457.0 85 361.0 86 265.0 87 200.0 88 135.0 89 135.0 90 108.5 91 82.0 92 54.5 93 27.0 94 16.0 95 5.0 96 5.0 97 4.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1662240.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.47646031770063 #Duplication Level Percentage of deduplicated Percentage of total 1 77.06137075219992 36.58601110544436 2 12.964183769439384 12.30987112562335 3 4.238492883282601 6.036859175400688 4 1.8961013488857446 3.600807217948508 5 0.9901322344481706 2.3503986869027416 6 0.5762388888301436 1.641466964343613 7 0.37046639691058253 1.2311903234376764 8 0.28654632200046193 1.08833640685104 9 0.1958669571822369 0.8369162838190116 >10 1.2400235442094607 11.108635904029548 >50 0.1057959827026749 3.443593378014325 >100 0.06135883713413367 5.48418718652542 >500 0.005624491829319917 1.8286765866802022 >1k 0.006519297347620813 5.7179825648425355 >5k 7.669761585436251E-4 2.438417515472715 >10k+ 5.113174390290834E-4 4.2966495746643085 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 22578 1.358287611897199 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20042 1.2057223986909231 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16763 1.008458465684859 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11415 0.6867239387814034 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7678 0.4619068245259409 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7250 0.4361584368081625 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 7043 0.4237053614399846 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 6748 0.4059582250457214 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6235 0.37509625565501975 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5225 0.31433487342381367 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 4574 0.27517085378766004 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4556 0.27408797766868803 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4400 0.26470305130426414 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3863 0.23239724708826645 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3854 0.23185580902878042 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3593 0.21615410530368662 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2893 0.17404225623255365 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2677 0.1610477428048898 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 2669 0.16056646452979112 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2607 0.1568365578977765 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2450 0.14739147174896525 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2399 0.14432332274521129 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2219 0.1334945615554914 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2187 0.13156944845509674 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2004 0.12056020791221483 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 1962 0.11803349696794685 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 1945 0.11701078063336222 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1681 0.10112859755510635 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 6.015978438733275E-5 0.0 5 0.0 0.0 0.0 6.015978438733275E-5 0.0 6 0.0 0.0 0.0 6.015978438733275E-5 0.0 7 0.0 0.0 0.0 1.203195687746655E-4 0.0 8 0.0 0.0 0.0 1.8047935316199828E-4 0.0 9 0.0 0.0 0.0 2.40639137549331E-4 0.0 10 0.0 0.0 0.0 2.40639137549331E-4 0.0 11 0.0 0.0 0.0 3.007989219366638E-4 0.0 12 0.0 0.0 0.0 3.6095870632399656E-4 0.0 13 6.015978438733275E-5 0.0 0.0 4.2111849071132927E-4 0.0 14 6.015978438733275E-5 0.0 0.0 7.219174126479931E-4 0.0 15 6.015978438733275E-5 0.0 0.0 9.62556550197324E-4 0.0 16 6.015978438733275E-5 0.0 0.0 0.0014438348252959862 0.0 17 6.015978438733275E-5 0.0 0.0 0.002165752237943979 0.0 18 6.015978438733275E-5 0.0 0.0 0.002466551159880643 0.0 19 6.015978438733275E-5 0.0 0.0 0.002947829434979305 0.0 20 6.015978438733275E-5 0.0 0.0 0.0036095870632399654 0.0 21 6.015978438733275E-5 0.0 0.0 0.005113581672923285 0.0 22 6.015978438733275E-5 0.0 0.0 0.008302050245451921 0.0 23 6.015978438733275E-5 0.0 0.0 0.015521224371931852 0.0 24 6.015978438733275E-5 0.0 0.0 0.026349985561651745 0.0 25 6.015978438733275E-5 0.0 0.0 0.031162768312638367 0.0 26 6.015978438733275E-5 0.0 0.0 0.03675762826066031 0.0 27 6.015978438733275E-5 0.0 0.0 0.06924391182982 0.0 28 6.015978438733275E-5 0.0 0.0 0.10479834440273367 0.0 29 6.015978438733275E-5 0.0 0.0 0.15286601212821252 0.0 30 6.015978438733275E-5 0.0 0.0 0.2517686976609876 0.0 31 6.015978438733275E-5 0.0 0.0 0.3701029935508711 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4755 0.0 30.619347 1 AACCGTG 50 2.7028043E-4 22.2 7 GTATTGG 530 0.0 18.849056 1 GTATCAA 8045 0.0 18.76445 2 TTGGACC 870 0.0 17.862068 4 TGGACCC 890 0.0 17.25281 5 CAATTCG 65 0.001580335 17.076923 15 GGACCCT 940 0.0 16.531914 6 ATTGGAC 625 0.0 16.28 3 TATTGGA 705 0.0 15.74468 2 TGGACTA 155 7.214112E-9 15.5161295 5 GACCCTC 945 0.0 15.465609 7 CGTCTGT 400 0.0 15.262501 34 GTTATAC 135 3.9749466E-7 15.074075 3 AGCGGAC 90 8.276754E-4 14.388888 36 TTTTTAC 1155 0.0 14.255411 1 CGTTGAT 1345 0.0 14.167286 34 TAAACGT 80 0.006300181 13.875 4 AGTATCA 320 0.0 13.875 1 TTAAACG 80 0.006300181 13.875 18 >>END_MODULE