##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088255_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2354773 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.014583995994517 31.0 30.0 33.0 27.0 34.0 2 30.834434996494355 31.0 31.0 34.0 27.0 34.0 3 30.85919661895223 31.0 31.0 34.0 27.0 34.0 4 35.01925026318885 35.0 35.0 37.0 32.0 37.0 5 34.92425469461388 35.0 35.0 37.0 32.0 37.0 6 35.026794090130984 36.0 35.0 37.0 32.0 37.0 7 34.666684644337266 35.0 35.0 37.0 31.0 37.0 8 34.88395611806318 35.0 35.0 37.0 32.0 37.0 9 36.28368466939276 38.0 35.0 39.0 32.0 39.0 10 36.22118310342441 38.0 35.0 39.0 32.0 39.0 11 36.313531283057856 38.0 35.0 39.0 32.0 39.0 12 36.06261198000826 38.0 35.0 39.0 30.0 39.0 13 36.23218713650955 38.0 35.0 39.0 32.0 39.0 14 37.10938888801596 39.0 36.0 40.0 31.0 41.0 15 37.164897847902964 39.0 36.0 40.0 31.0 41.0 16 37.06295723621767 39.0 36.0 40.0 31.0 41.0 17 37.195322011930664 39.0 36.0 40.0 32.0 41.0 18 37.222580690368034 39.0 36.0 40.0 32.0 41.0 19 37.31768879632984 39.0 36.0 40.0 31.0 41.0 20 37.28880320948134 39.0 36.0 40.0 31.0 41.0 21 37.231877977197804 39.0 36.0 40.0 31.0 41.0 22 37.15286441623035 39.0 36.0 40.0 31.0 41.0 23 37.039309946224115 39.0 36.0 40.0 31.0 41.0 24 36.95551333398166 39.0 35.0 40.0 31.0 41.0 25 36.87678430150167 39.0 35.0 40.0 31.0 41.0 26 36.606774835621096 38.0 35.0 40.0 30.0 41.0 27 36.43224378740541 38.0 35.0 40.0 30.0 41.0 28 36.252318588670754 38.0 35.0 40.0 30.0 41.0 29 36.084001727555055 38.0 35.0 40.0 30.0 41.0 30 35.89084510481477 38.0 34.0 40.0 29.0 41.0 31 35.59691188917148 38.0 34.0 40.0 29.0 41.0 32 35.38345564519383 38.0 34.0 40.0 27.0 41.0 33 35.43847793396646 38.0 34.0 40.0 28.0 41.0 34 35.41050538629413 38.0 34.0 40.0 27.0 41.0 35 35.276227050335635 38.0 34.0 40.0 27.0 41.0 36 35.16582872319328 38.0 34.0 40.0 26.0 41.0 37 34.98956544855916 38.0 33.0 40.0 25.0 41.0 38 34.83449232686123 38.0 33.0 40.0 25.0 41.0 39 34.73881856127958 38.0 33.0 40.0 24.0 41.0 40 34.516971699607566 38.0 33.0 40.0 23.0 41.0 41 34.3234906294577 38.0 33.0 40.0 22.0 41.0 42 34.084036975113946 38.0 33.0 40.0 21.0 41.0 43 33.714507088369025 37.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 4.0 14 0.0 15 10.0 16 23.0 17 85.0 18 210.0 19 449.0 20 1014.0 21 1915.0 22 3633.0 23 6207.0 24 10090.0 25 15927.0 26 23997.0 27 34466.0 28 47987.0 29 64419.0 30 81769.0 31 100340.0 32 122593.0 33 148451.0 34 178802.0 35 211636.0 36 257924.0 37 323837.0 38 363168.0 39 355815.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.81992022160947 25.687741451086794 14.433747966364486 21.05859036093925 2 17.808722963954487 23.34195270626935 36.36558598217323 22.483738347602934 3 19.932324686923113 26.150206410554222 33.16744331619226 20.750025586330402 4 12.854912129534354 15.988717383798779 34.75583421416842 36.40053627249845 5 10.67134708950714 41.27807648550412 34.38365396579628 13.666922459192458 6 31.23498528308249 35.688832851404364 15.130970161455053 17.9452117040581 7 23.304114664131106 36.852214629605484 20.897725598178678 18.94594510808473 8 28.147468991703235 33.422117545937546 19.996025094563254 18.43438836779596 9 24.73750123684958 13.789736845122652 24.94418782617263 36.528574091855134 10 16.642198632309782 28.563687455223924 33.15173054897436 21.642383363491938 11 30.46280894166869 21.841638238590303 25.596097797961843 22.099455021779168 12 20.101045833292634 28.3292699551082 31.59315144177379 19.976532769825372 13 31.332319505956622 21.339933828016544 29.568922354723785 17.75882431130304 14 20.525630283683398 23.413679365272152 29.334419920731214 26.726270430313242 15 22.824705396231398 29.39909706795517 27.69307275053689 20.083124785276542 16 21.20637530666438 28.645054109249596 28.011744656491306 22.13682592759472 17 18.53350620208402 27.592171304834906 28.42452329799943 25.449799195081653 18 19.65858280182421 26.596576400357915 33.90891606112351 19.835924736694366 19 18.694753167290436 24.925035236942158 35.75567581248808 20.62453578327932 20 24.025627948001784 23.481031929616993 34.06162717170615 18.431712950675074 21 23.22712210476339 24.54109164662581 32.52963236796073 19.702153880650066 22 21.053281993635906 24.424519900644352 33.39162628414714 21.130571821572612 23 20.154002105510806 26.78139251639118 34.637436389834605 18.42716898826341 24 18.270720787099222 25.72893438136075 32.97273240350556 23.027612428034463 25 19.7891686374865 26.82241557891143 34.450921596264266 18.9374941873378 26 21.508570040509213 25.41238582232767 32.712112802380524 20.36693133478259 27 19.96948325804653 27.13374070451802 32.199834124138505 20.69694191329695 28 19.556237480215717 26.71348788184679 32.159830268140496 21.570444369797002 29 18.377312802550392 26.71174673737129 33.3246134553097 21.586327004768613 30 17.693255358372124 26.83685433797653 35.981472524103175 19.48841777954818 31 19.47958465635541 26.120819289162906 34.24967077505985 20.149925279421836 32 20.847020073697127 26.547144884029162 31.936454172015733 20.669380870257985 33 22.002375600535593 26.40318196276244 31.156506380869832 20.437936055832136 34 19.757997904681257 29.81493332903002 31.271591784006358 19.15547698228237 35 18.092232244891544 30.823268315035037 31.5052448792304 19.579254560843022 36 19.31702121605777 26.32894975439246 34.34725979956455 20.006769229985224 37 19.345941201126394 26.842502440787285 33.05456619385393 20.75699016423239 38 19.88433704650087 26.342284373058465 33.71454488394423 20.058833696496436 39 21.227863577508323 25.61503805250018 33.45447735301874 19.70262101697276 40 19.026122687834455 26.58888988450267 32.50861123343949 21.876376194223393 41 20.143640172534678 25.99664596120305 32.385159843432895 21.474554022829377 42 17.17995747360786 27.92260655273353 32.96479108601976 21.93264488763885 43 17.88172363111009 27.671329678062385 32.56878688519021 21.878159805637313 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 195.0 1 289.0 2 383.0 3 1058.5 4 1734.0 5 1734.0 6 3107.0 7 4480.0 8 5164.0 9 5848.0 10 8976.5 11 12105.0 12 12105.0 13 22407.0 14 32709.0 15 55530.0 16 78351.0 17 74974.5 18 71598.0 19 71598.0 20 76444.0 21 81290.0 22 64611.0 23 47932.0 24 51958.5 25 55985.0 26 55985.0 27 59357.5 28 62730.0 29 63681.5 30 64633.0 31 68214.0 32 71795.0 33 71795.0 34 76919.5 35 82044.0 36 89460.0 37 96876.0 38 99743.5 39 102611.0 40 102611.0 41 107248.5 42 111886.0 43 131879.5 44 151873.0 45 200583.5 46 249294.0 47 249294.0 48 254037.0 49 258780.0 50 230953.5 51 203127.0 52 185440.0 53 167753.0 54 167753.0 55 142240.0 56 116727.0 57 91639.0 58 66551.0 59 56354.0 60 46157.0 61 46157.0 62 40246.0 63 34335.0 64 29979.5 65 25624.0 66 21778.5 67 17933.0 68 17933.0 69 15245.0 70 12557.0 71 10277.5 72 7998.0 73 6457.5 74 4917.0 75 4917.0 76 3791.5 77 2666.0 78 2100.0 79 1534.0 80 1220.5 81 907.0 82 907.0 83 659.0 84 411.0 85 320.0 86 229.0 87 179.0 88 129.0 89 129.0 90 93.0 91 57.0 92 37.0 93 17.0 94 14.0 95 11.0 96 11.0 97 6.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2354773.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.22756780967575 #Duplication Level Percentage of deduplicated Percentage of total 1 71.38947325342919 25.862669831856387 2 13.905030198641107 10.074908488337195 3 5.7057425453144415 6.2011552489479245 4 2.791951290470886 4.04582418787383 5 1.5833187949843497 2.867989450481481 6 1.0556878028954202 2.294700087914486 7 0.6698659480572045 1.6987329839644576 8 0.47137297786683174 1.3661357215455547 9 0.3345457098122233 1.0907799648892582 >10 1.7839974804075842 12.09485535589937 >50 0.16804051328990494 4.246003866897906 >100 0.11755903088781555 8.187264358094435 >500 0.010815813750395678 2.6417995858506855 >1k 0.010578103558079291 7.489950062899581 >5k 0.0010696958654237484 2.721672751932001 >10k+ 9.508407692655542E-4 7.115558052615464 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37799 1.6052078055931507 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 35879 1.523671283813769 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 30208 1.2828412759956056 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 16817 0.7141665035228448 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12349 0.5244242226320753 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 11241 0.4773708548552238 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10665 0.4529098983214093 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10296 0.4372395980419344 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9276 0.3939233208466379 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8293 0.3521783203731315 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7939 0.337145024170058 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7446 0.3162088235256647 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7032 0.2986275110169855 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6185 0.26265801416951867 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6001 0.2548440974989946 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5683 0.24133961107928448 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5354 0.22736798833688002 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4679 0.19870280489881617 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4672 0.19840553632982882 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4491 0.19071902047458503 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3927 0.16676766720189165 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3816 0.16205383703652115 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3490 0.14820961510939695 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3473 0.14748767715614203 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3462 0.14702054083344762 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3130 0.13292151727576287 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 3028 0.12858988955623324 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 2968 0.12604187325062757 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2890 0.12272945205334018 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 2797 0.11878002677965137 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2741 0.11640187822775275 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2712 0.11517033701337666 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2700 0.11466073375225552 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTC 2554 0.10846056074194839 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2477 0.10519060648308774 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2453 0.1041713999608455 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 2432 0.1032795942538835 No Hit ACGCACATGCGAGGGTCCAAAAAAAAAAAAAAAAAAAAAAAAA 2428 0.10310972650017645 No Hit ATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAG 2419 0.1027275240543356 No Hit CTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTAC 2358 0.10013704081030315 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.24669384267613E-5 0.0 0.0 0.0 3 0.0 4.24669384267613E-5 0.0 0.0 0.0 4 0.0 4.24669384267613E-5 0.0 0.0 0.0 5 0.0 4.24669384267613E-5 0.0 0.0 0.0 6 4.24669384267613E-5 4.24669384267613E-5 0.0 4.24669384267613E-5 0.0 7 4.24669384267613E-5 4.24669384267613E-5 0.0 4.24669384267613E-5 0.0 8 4.24669384267613E-5 4.24669384267613E-5 0.0 8.49338768535226E-5 0.0 9 4.24669384267613E-5 4.24669384267613E-5 0.0 2.548016305605678E-4 0.0 10 4.24669384267613E-5 8.49338768535226E-5 0.0 4.2466938426761303E-4 0.0 11 4.24669384267613E-5 8.49338768535226E-5 0.0 4.6713632269437436E-4 0.0 12 4.24669384267613E-5 1.274008152802839E-4 0.0 6.370040764014196E-4 0.0 13 4.24669384267613E-5 1.274008152802839E-4 0.0 8.068718301084648E-4 0.0 14 4.24669384267613E-5 1.274008152802839E-4 0.0 9.7673958381551E-4 0.0 15 4.24669384267613E-5 1.274008152802839E-4 0.0 0.0015712767217901684 0.0 16 4.24669384267613E-5 1.274008152802839E-4 0.0 0.0026329501824592007 0.0 17 4.24669384267613E-5 1.274008152802839E-4 0.0 0.004204226904249369 0.0 18 4.24669384267613E-5 1.274008152802839E-4 0.0 0.004968631795931073 0.0 19 4.24669384267613E-5 1.274008152802839E-4 0.0 0.005987838318173344 0.0 20 4.24669384267613E-5 1.274008152802839E-4 0.0 0.0073043134094029445 0.0 21 4.24669384267613E-5 1.274008152802839E-4 0.0 0.009342726453887487 0.0 22 4.24669384267613E-5 1.274008152802839E-4 0.0 0.016477172109583386 0.0 23 4.24669384267613E-5 1.274008152802839E-4 0.0 0.025437696117630023 0.0 24 4.24669384267613E-5 1.274008152802839E-4 0.0 0.041150463335531705 0.0 25 4.24669384267613E-5 1.274008152802839E-4 0.0 0.04909178082133607 0.0 26 4.24669384267613E-5 1.274008152802839E-4 0.0 0.06089758970397571 0.0 27 4.24669384267613E-5 1.274008152802839E-4 0.0 0.14748767715614203 0.0 28 4.24669384267613E-5 1.274008152802839E-4 0.0 0.23522437194583087 0.0 29 4.24669384267613E-5 1.274008152802839E-4 0.0 0.3365929539705101 0.0 30 4.24669384267613E-5 1.274008152802839E-4 0.0 0.5318134699183318 0.0 31 4.24669384267613E-5 1.274008152802839E-4 0.0 0.7939194138883026 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8295 0.0 30.933695 1 GTCGTAC 25 0.0054975 29.6 1 TCTCGCG 40 0.0019317854 23.125002 15 TATACGT 60 3.728424E-5 21.583332 4 AGTATCA 400 0.0 20.8125 1 ACGTTTA 200 0.0 20.35 26 AGCCGTC 130 3.274181E-11 19.923077 12 ATTGGAC 610 0.0 19.713114 3 ATCACGT 200 0.0 19.425001 23 GTATTGG 635 0.0 19.228346 1 TCACGTT 205 0.0 18.951218 24 GTATCAA 14815 0.0 17.894365 2 CGTCTGT 910 0.0 17.686813 34 GATCACG 235 0.0 17.319149 22 ACGGCTC 205 0.0 17.146341 5 ATCCACG 185 1.8189894E-12 17.0 1 TTGGACC 1370 0.0 16.879562 4 AATGCGT 100 5.883059E-6 16.650002 35 GGACCCT 1405 0.0 16.064056 6 GTCGACG 70 0.002593577 15.857142 36 >>END_MODULE