##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088252_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1835941 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.847864936836206 31.0 30.0 33.0 27.0 34.0 2 30.76128916996788 31.0 31.0 34.0 27.0 34.0 3 30.764204296325428 31.0 31.0 34.0 27.0 34.0 4 34.98154515858625 35.0 35.0 37.0 32.0 37.0 5 34.914412826991715 35.0 35.0 37.0 32.0 37.0 6 35.038992538431245 36.0 35.0 37.0 32.0 37.0 7 34.63819970249589 35.0 35.0 37.0 30.0 37.0 8 34.873353773351106 35.0 35.0 37.0 32.0 37.0 9 36.267886604199155 38.0 35.0 39.0 32.0 39.0 10 36.22317438305479 38.0 35.0 39.0 32.0 39.0 11 36.32385899111137 38.0 35.0 39.0 32.0 39.0 12 36.05483564014312 38.0 35.0 39.0 30.0 39.0 13 36.217656231872375 38.0 35.0 39.0 32.0 39.0 14 37.1109610820827 39.0 36.0 40.0 31.0 41.0 15 37.152925938251826 39.0 36.0 40.0 31.0 41.0 16 37.06933937419558 39.0 36.0 40.0 31.0 41.0 17 37.194736105354146 39.0 36.0 40.0 32.0 41.0 18 37.208134139386836 39.0 36.0 40.0 32.0 41.0 19 37.300318474286485 39.0 36.0 40.0 31.0 41.0 20 37.26297304760883 39.0 36.0 40.0 31.0 41.0 21 37.198135996744995 39.0 36.0 40.0 31.0 41.0 22 37.11976256317605 39.0 36.0 40.0 31.0 41.0 23 36.98303758127304 39.0 35.0 40.0 31.0 41.0 24 36.90676770114072 39.0 35.0 40.0 31.0 41.0 25 36.824162105427135 39.0 35.0 40.0 31.0 41.0 26 36.56055396115671 38.0 35.0 40.0 30.0 41.0 27 36.41565115654588 38.0 35.0 40.0 30.0 41.0 28 36.24256117162806 38.0 35.0 40.0 30.0 41.0 29 36.08084573523877 38.0 35.0 40.0 30.0 41.0 30 35.90418319542948 38.0 34.0 40.0 29.0 41.0 31 35.62061743814208 38.0 34.0 40.0 28.0 41.0 32 35.377646122615054 38.0 34.0 40.0 27.0 41.0 33 35.465398942558615 38.0 34.0 40.0 28.0 41.0 34 35.42549079736222 38.0 34.0 40.0 27.0 41.0 35 35.31750965853478 38.0 34.0 40.0 27.0 41.0 36 35.21971403220474 38.0 34.0 40.0 26.0 41.0 37 35.04948688438245 38.0 33.0 40.0 25.0 41.0 38 34.90838104274593 38.0 33.0 40.0 25.0 41.0 39 34.83949102939582 38.0 33.0 40.0 24.0 41.0 40 34.64562368834292 38.0 33.0 40.0 24.0 41.0 41 34.45959047703602 38.0 33.0 40.0 23.0 41.0 42 34.23265671391401 38.0 33.0 40.0 22.0 41.0 43 33.890169673208455 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 4.0 16 21.0 17 56.0 18 146.0 19 348.0 20 694.0 21 1471.0 22 2629.0 23 4751.0 24 7670.0 25 12065.0 26 18165.0 27 26371.0 28 36980.0 29 49935.0 30 64034.0 31 78878.0 32 95744.0 33 115872.0 34 139874.0 35 166132.0 36 202682.0 37 254693.0 38 286471.0 39 270253.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.06400042267153 25.618633714264238 13.818908123953873 21.498457739110354 2 17.95831129649591 22.98222001687418 36.21723138161847 22.842237305011437 3 19.873024242064425 26.478792074472977 32.44445219100178 21.203731492460815 4 12.962017842621304 15.863200396962648 34.936689141971335 36.23809261844471 5 10.927311934315972 40.86008210503497 34.62780122019172 13.584804740457345 6 31.548617303061484 35.53480204429228 15.287582770906036 17.628997881740208 7 23.931760334346254 35.955294859693204 21.251881187903095 18.861063618057443 8 28.022632535577124 33.41616097685056 20.04911922550888 18.51208726206343 9 24.93369884979964 13.749842723704084 24.447190841100014 36.869267585396265 10 16.503852792655103 28.065117560967373 33.535173515924534 21.89585613045299 11 30.809432329252413 21.692036944542338 25.53932833353577 21.95920239266948 12 20.14950371498866 27.755031343599825 31.696116596339426 20.39934834507209 13 31.18896522273864 20.973331931690613 29.380029096795596 18.457673748775154 14 20.823381579255543 23.09153725528217 28.746893282518336 27.33818788294395 15 23.081569614709842 28.972608596899356 27.39646862290237 20.549353165488434 16 21.668996988465317 28.47852953880326 27.671041716482176 22.181431756249246 17 18.88453931798462 27.357524016294644 28.179010109802004 25.578926555918734 18 20.154460301284193 26.39322287589852 33.17165420893155 20.28066261388574 19 19.225399944769467 24.870189183639344 34.77442902576935 21.129981845821845 20 24.29620559702082 23.531638543940137 33.29545993035724 18.876695928681805 21 23.383213294980614 24.6861963429108 31.81807040640195 20.112519955706638 22 21.47073353664415 24.247129945896955 32.848822483946925 21.433314033511973 23 20.523535342366667 26.480643985836146 34.046192116195456 18.949628555601734 24 18.93279794938944 25.59673758579388 32.12684939221903 23.343615072597647 25 20.266827746643273 26.60749991421293 33.720800396091164 19.404871943052637 26 21.933221165603907 25.338504886594936 31.92994763992961 20.798326307871548 27 20.378323704302044 27.052830129072774 31.454169823540077 21.114676343085097 28 20.0576706985682 26.508477124264886 31.65194306352982 21.781909113637095 29 19.032964566944145 26.352154018021277 32.75181500930586 21.863066405728723 30 18.30587148497691 26.579122095971492 35.062891454572885 20.052114964478708 31 19.98871423428095 25.814119299040655 33.593617659826755 20.603548806851638 32 21.248340769120578 26.286465632610202 31.255797435756378 21.209396162512846 33 22.369618631535545 26.19016624172563 30.68704277533973 20.75317235139909 34 20.25424564297001 29.279753543278353 30.744669899522915 19.721330914228723 35 18.708934546371587 30.434420278211554 30.9722371252671 19.88440805014976 36 20.10097274367749 26.130523802235473 33.391922725185616 20.37658072890142 37 20.0104469588075 26.563653189290942 32.29139716363434 21.134502688267215 38 20.38371603444773 26.207160251881735 32.893322824644144 20.51580088902639 39 21.617306874240512 25.501636490497244 32.734439723280865 20.146616911981376 40 19.572197581512697 26.44534873397348 31.777328356412326 22.205125328101502 41 20.814721170233682 25.791406150851255 31.61681121561096 21.777061463304104 42 17.877426344310628 27.749965821341753 32.17140420089753 22.201203633450096 43 18.705230723645258 27.50066587107102 31.672150684580824 22.121952720702897 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 165.0 1 249.5 2 334.0 3 798.0 4 1262.0 5 1262.0 6 2244.5 7 3227.0 8 3730.5 9 4234.0 10 6528.5 11 8823.0 12 8823.0 13 16072.5 14 23322.0 15 38318.5 16 53315.0 17 51753.5 18 50192.0 19 50192.0 20 53837.0 21 57482.0 22 46254.0 23 35026.0 24 37462.0 25 39898.0 26 39898.0 27 43012.0 28 46126.0 29 47498.0 30 48870.0 31 52040.5 32 55211.0 33 55211.0 34 59727.5 35 64244.0 36 69448.5 37 74653.0 38 77851.0 39 81049.0 40 81049.0 41 85980.5 42 90912.0 43 106609.0 44 122306.0 45 157733.5 46 193161.0 47 193161.0 48 195882.0 49 198603.0 50 179697.0 51 160791.0 52 146787.5 53 132784.0 54 132784.0 55 113584.0 56 94384.0 57 75596.0 58 56808.0 59 48679.5 60 40551.0 61 40551.0 62 35562.5 63 30574.0 64 26542.5 65 22511.0 66 19147.0 67 15783.0 68 15783.0 69 13513.5 70 11244.0 71 9419.0 72 7594.0 73 6126.5 74 4659.0 75 4659.0 76 3636.5 77 2614.0 78 2047.0 79 1480.0 80 1146.5 81 813.0 82 813.0 83 627.0 84 441.0 85 343.0 86 245.0 87 192.0 88 139.0 89 139.0 90 111.5 91 84.0 92 51.5 93 19.0 94 11.5 95 4.0 96 4.0 97 3.5 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1835941.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.77226055324738 #Duplication Level Percentage of deduplicated Percentage of total 1 73.74993710435473 30.069516514043578 2 13.777096009731633 11.234466963517658 3 5.09198646585483 6.228353967583272 4 2.387274236850966 3.893382687877696 5 1.272491726779093 2.594118211804443 6 0.7376983717573464 1.8046578133798126 7 0.48950838646658706 1.397085443321078 8 0.3556635126316695 1.1600964325041299 9 0.2560205977924899 0.9394684668174195 >10 1.621020314940704 12.678671408205616 >50 0.15711629643249173 4.444870474936739 >100 0.08625668250953895 6.808087952919753 >500 0.007742626910479942 2.2531004969171398 >1k 0.00842180470964485 6.415260876060666 >5k 0.001222520038496833 3.4195266698086377 >10k+ 5.433422393319257E-4 4.659335620302397 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 26175 1.425699409730487 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 23570 1.2838103185233076 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 20862 1.1363110252453645 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 13522 0.7365160427268632 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8693 0.4734901611762034 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8262 0.45001446124902705 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7749 0.4220723868577476 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7286 0.3968537115299457 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7132 0.3884656424144349 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6039 0.32893213888681605 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5776 0.31460705981292425 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5447 0.2966870939752421 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5359 0.29189391162352163 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4688 0.2553458961916532 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4675 0.25463781243514905 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4018 0.21885234874105433 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3949 0.2150940580334553 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3261 0.17762008692000453 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3233 0.1760949834444571 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3220 0.17538689968795296 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2897 0.1577937417378881 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2773 0.15103971206046382 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2720 0.14815290905317763 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2618 0.14259717496368346 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2416 0.13159464274723426 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2329 0.12685592837678336 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2198 0.11972062283047223 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2189 0.11923041099904626 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 2135 0.11628914001049052 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2111 0.11498190846002132 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 2054 0.11187723352765694 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2021 0.11007979014576177 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1975 0.10757426300736243 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 1853 0.10092916929247728 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 1849 0.10071129736739907 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 5.44679812695506E-5 0.0 3 0.0 0.0 0.0 5.44679812695506E-5 0.0 4 0.0 0.0 0.0 1.089359625391012E-4 0.0 5 0.0 0.0 0.0 1.089359625391012E-4 0.0 6 0.0 0.0 0.0 1.089359625391012E-4 0.0 7 0.0 0.0 0.0 1.089359625391012E-4 0.0 8 5.44679812695506E-5 0.0 0.0 1.089359625391012E-4 0.0 9 5.44679812695506E-5 0.0 0.0 1.089359625391012E-4 0.0 10 5.44679812695506E-5 0.0 0.0 2.178719250782024E-4 0.0 11 5.44679812695506E-5 0.0 0.0 3.268078876173036E-4 0.0 12 1.089359625391012E-4 0.0 0.0 4.902118314259554E-4 0.0 13 1.089359625391012E-4 0.0 0.0 5.44679812695506E-4 0.0 14 1.089359625391012E-4 0.0 0.0 8.714877003128096E-4 0.0 15 1.089359625391012E-4 0.0 0.0 0.0014161675130083156 0.0 16 1.089359625391012E-4 0.0 0.0 0.002178719250782024 0.0 17 1.089359625391012E-4 0.0 0.0 0.0032136108949034855 0.0 18 1.089359625391012E-4 0.0 0.0 0.00364935474505989 0.0 19 1.089359625391012E-4 0.0 0.0 0.004629778407911801 0.0 20 1.089359625391012E-4 0.0 0.0 0.006045945920920117 0.0 21 1.089359625391012E-4 0.0 0.0 0.00811572920916304 0.0 22 1.089359625391012E-4 0.0 0.0 0.013235719448500795 0.0 23 1.089359625391012E-4 0.0 0.0 0.022114000395437546 0.0 24 1.089359625391012E-4 0.0 0.0 0.03447823214362553 0.0 25 1.089359625391012E-4 0.0 0.0 0.041068857877241155 0.0 26 1.089359625391012E-4 0.0 0.0 0.05098203046829936 0.0 27 1.089359625391012E-4 0.0 0.0 0.12010189869935907 0.0 28 1.089359625391012E-4 0.0 0.0 0.1957034567014953 0.0 29 1.089359625391012E-4 0.0 0.0 0.2753901132988478 0.0 30 1.089359625391012E-4 0.0 0.0 0.43623406198783077 0.0 31 1.089359625391012E-4 0.0 0.0 0.6411970755051497 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6250 0.0 29.452002 1 TAGGTCG 55 1.9034624E-5 23.545454 21 CGGTTAC 40 0.0019316246 23.125 31 ATTGGAC 670 0.0 22.365671 3 GTATTGG 605 0.0 22.01653 1 CGGGATA 110 7.4578566E-11 21.863636 24 AGCCGTC 125 1.8189894E-11 20.720001 12 TCACGTT 85 1.2461369E-6 19.588236 24 TTGGACC 1180 0.0 19.440678 4 ACGTTTA 90 2.1536416E-6 18.5 26 TACGTAG 50 0.0070364447 18.499998 14 TATTGGA 775 0.0 18.380646 2 TGGACCC 1215 0.0 18.271605 5 GTATCAA 10645 0.0 17.93518 2 GGACCCT 1235 0.0 17.825912 6 GACCCTC 1250 0.0 17.464 7 AGTCCGA 65 0.0015804198 17.076923 10 CGTCTGT 740 0.0 16.75 34 AAGCCGT 160 6.2937033E-10 16.1875 11 TCTATAC 185 1.8189894E-11 16.0 3 >>END_MODULE