##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088248_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 871453 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.974155806451982 31.0 30.0 33.0 27.0 34.0 2 30.833478110695584 31.0 31.0 34.0 27.0 34.0 3 30.831307024016212 31.0 31.0 34.0 27.0 34.0 4 35.027284317111764 35.0 35.0 37.0 32.0 37.0 5 34.957376932548286 35.0 35.0 37.0 32.0 37.0 6 35.08351224908285 36.0 35.0 37.0 32.0 37.0 7 34.66355041522606 35.0 35.0 37.0 31.0 37.0 8 34.9130429294523 36.0 35.0 37.0 32.0 37.0 9 36.31386775878906 38.0 35.0 39.0 32.0 39.0 10 36.281128184767276 38.0 35.0 39.0 32.0 39.0 11 36.376730586732734 38.0 35.0 39.0 32.0 39.0 12 36.11037887298569 38.0 35.0 39.0 31.0 39.0 13 36.25803112732414 38.0 35.0 39.0 32.0 39.0 14 37.15267031038966 39.0 36.0 40.0 31.0 41.0 15 37.19219739905652 39.0 36.0 40.0 32.0 41.0 16 37.10621341598457 39.0 36.0 40.0 31.0 41.0 17 37.23238660031006 39.0 36.0 40.0 32.0 41.0 18 37.24502755742421 39.0 36.0 40.0 32.0 41.0 19 37.34216532618512 39.0 36.0 40.0 32.0 41.0 20 37.31901663084527 39.0 36.0 40.0 31.0 41.0 21 37.24586179633325 39.0 36.0 40.0 31.0 41.0 22 37.16618222669496 39.0 36.0 40.0 31.0 41.0 23 37.01895799314478 39.0 36.0 40.0 31.0 41.0 24 36.95401587922699 39.0 35.0 40.0 31.0 41.0 25 36.86397086245615 39.0 35.0 40.0 31.0 41.0 26 36.61428556674887 38.0 35.0 40.0 30.0 41.0 27 36.47321886550393 38.0 35.0 40.0 30.0 41.0 28 36.30009880050903 38.0 35.0 40.0 30.0 41.0 29 36.1357193101636 38.0 35.0 40.0 30.0 41.0 30 35.9510197337091 38.0 34.0 40.0 29.0 41.0 31 35.665981986406614 38.0 34.0 40.0 29.0 41.0 32 35.450050662514215 38.0 34.0 40.0 27.0 41.0 33 35.53611841372971 38.0 34.0 40.0 28.0 41.0 34 35.4986361857725 38.0 34.0 40.0 28.0 41.0 35 35.39621643393276 38.0 34.0 40.0 27.0 41.0 36 35.30798562859959 38.0 34.0 40.0 27.0 41.0 37 35.12787149737278 38.0 34.0 40.0 26.0 41.0 38 34.98994093772125 38.0 33.0 40.0 25.0 41.0 39 34.93165437493474 38.0 33.0 40.0 25.0 41.0 40 34.74920850579434 38.0 33.0 40.0 24.0 41.0 41 34.57347900575246 38.0 33.0 40.0 23.0 41.0 42 34.324809255347105 38.0 33.0 40.0 22.0 41.0 43 33.981685759300845 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 2.0 15 3.0 16 6.0 17 28.0 18 53.0 19 148.0 20 328.0 21 637.0 22 1177.0 23 2074.0 24 3504.0 25 5486.0 26 8204.0 27 12169.0 28 16978.0 29 22922.0 30 29869.0 31 36389.0 32 44351.0 33 54350.0 34 65984.0 35 79098.0 36 96686.0 37 122477.0 38 139485.0 39 129044.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.63897077639299 25.13813137369428 13.668780760408191 21.55411708950454 2 18.043543369521934 22.640119432717544 36.33758791351915 22.978749284241378 3 20.048126519731987 26.607286910481694 32.25280078214201 21.091785787644312 4 12.779002424686128 15.56194080461023 34.75196023193448 36.90709653876916 5 10.900530493325515 40.748267548565444 34.633078318624186 13.718123639484862 6 31.872057357080646 35.16253888620499 15.103855285368232 17.86154847134613 7 24.122586071767497 35.79665225778097 20.991837769793666 19.088923900657868 8 28.196930872921435 33.31252517347465 19.937391919013418 18.553152034590507 9 24.887630199219004 13.602110498213902 24.065210630980673 37.44504867158642 10 16.542831340301774 27.800925580610773 33.322852752816274 22.333390326271182 11 30.830004601510353 21.27102666466235 25.524038588426457 22.374930145400842 12 20.333970965731943 27.32838145029049 31.70991436141708 20.627733222560483 13 31.7019965505885 20.44642682967412 29.374504419630203 18.477072200107177 14 21.014443693463676 22.649643755888153 28.280584265588622 28.05532828505955 15 23.187595888705413 28.4796770451189 27.545490118227832 20.78723694794785 16 21.93474576368433 28.195094858816255 27.3636099709336 22.506549406565814 17 18.9990739603857 26.853083298812443 27.74573040657385 26.402112334228008 18 20.356232636757234 26.07094129000646 32.977682101042745 20.595143972193565 19 19.36685053582924 24.21117375234235 34.506393345366874 21.915582366461532 20 24.911613133467895 22.715396011029853 33.079351382117 19.293639473385255 21 24.052473283125998 24.043293212600105 31.494985960229638 20.409247544044256 22 21.865206729450698 23.48066964024451 32.69447692531898 21.95964670498581 23 20.730550012450472 26.069105275901283 34.0312099447704 19.169134766877846 24 19.13941428855027 24.89807252944221 31.989677010693633 23.972836171313887 25 20.51160533040795 26.138873811898062 33.50186412807116 19.847656729622827 26 22.405912883425728 24.78309214610541 31.706471834969875 21.10452313549899 27 20.80605609252593 26.568271610746653 31.067309424604655 21.558362872122768 28 20.263743426208872 25.814128817044633 31.483510872072273 22.438616884674218 29 19.30419655449003 25.869209240199986 32.655232123820795 22.17136208148919 30 18.5157432471975 25.915339094592593 35.09093433610303 20.477983322106873 31 20.234137698762872 25.27020963838555 33.55625604593707 20.93939661691451 32 21.73771850002238 25.671608222130164 30.844348461707057 21.7463248161404 33 22.91655430642846 25.48353152723096 30.435261568897005 21.16465259744358 34 20.55050587926142 29.127216269838996 30.458670748738026 19.863607102161563 35 18.94938682866431 30.43239279685766 30.573995384719545 20.044224989758483 36 20.233678695236577 25.837767498648805 33.39112952735259 20.53742427876202 37 20.354740875296777 26.40050582188598 32.039364142415025 21.205389160402223 38 20.807088850460094 25.74631104603461 32.77640905476256 20.67019104874273 39 22.038365809745333 25.143754166891384 32.484482812039204 20.333397211324076 40 19.838820911741653 26.221379695749512 31.31379431822485 22.626005074283984 41 21.373384451026045 25.634428936500303 31.116193300155025 21.875993312318624 42 18.28520872611604 27.722321226732827 31.845435152555556 22.147034894595578 43 19.175446065364397 27.537113303872957 31.116193300155025 22.171247330607617 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 65.0 1 98.0 2 131.0 3 339.0 4 547.0 5 547.0 6 988.5 7 1430.0 8 1629.0 9 1828.0 10 2918.0 11 4008.0 12 4008.0 13 7380.0 14 10752.0 15 17836.0 16 24920.0 17 24007.0 18 23094.0 19 23094.0 20 24679.5 21 26265.0 22 20672.0 23 15079.0 24 16141.0 25 17203.0 26 17203.0 27 18610.5 28 20018.0 29 20718.5 30 21419.0 31 22908.0 32 24397.0 33 24397.0 34 26491.0 35 28585.0 36 30888.5 37 33192.0 38 35070.5 39 36949.0 40 36949.0 41 39271.0 42 41593.0 43 49062.0 44 56531.0 45 74894.5 46 93258.0 47 93258.0 48 94833.0 49 96408.0 50 87458.5 51 78509.0 52 72849.0 53 67189.0 54 67189.0 55 57534.0 56 47879.0 57 38186.0 58 28493.0 59 24530.5 60 20568.0 61 20568.0 62 18044.5 63 15521.0 64 13927.0 65 12333.0 66 10465.5 67 8598.0 68 8598.0 69 7124.5 70 5651.0 71 4733.5 72 3816.0 73 3043.0 74 2270.0 75 2270.0 76 1765.0 77 1260.0 78 1018.0 79 776.0 80 608.5 81 441.0 82 441.0 83 324.5 84 208.0 85 171.0 86 134.0 87 105.5 88 77.0 89 77.0 90 61.0 91 45.0 92 27.0 93 9.0 94 6.5 95 4.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 871453.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.89343529755481 #Duplication Level Percentage of deduplicated Percentage of total 1 80.75231878968503 40.29010592660671 2 11.16055382794837 11.136767405992394 3 3.3453528296066617 5.007334348544156 4 1.4345724855928395 2.863029979583149 5 0.7659983420258942 1.9109144357951604 6 0.4748134382673343 1.4214044136360466 7 0.33417448468929006 1.167117912095717 8 0.24405148375609026 0.974125353124539 9 0.1865401092047566 0.8376414182105699 >10 1.1437775944640607 10.725497388636622 >50 0.08472678425145264 2.8950663358546853 >100 0.05571034705595884 5.375824688602722 >500 0.010445690071367334 3.692093742240679 >1k 0.006035287596790015 6.850971273518777 >5k 2.3212644603038524E-4 0.8601643785445441 >10k+ 6.963793380911556E-4 3.991940999013511 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 12805 1.4693850385505587 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 11194 1.2845213683354122 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 10469 1.2013269791945176 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7427 0.8522547974474813 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4275 0.49056001872734384 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4269 0.489871513437902 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4172 0.4787406779252582 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4094 0.4697901091625136 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 4048 0.4645115686101258 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3091 0.354694974944145 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 2886 0.33117104422154725 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2843 0.3262367563138804 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2825 0.32417124044555473 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2575 0.2954835200521428 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2398 0.27517261401360715 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2197 0.25210768681730394 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1918 0.22009219085825626 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1741 0.19978128481972063 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1585 0.18188014729423158 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1549 0.17774911555758027 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1518 0.1741918382287972 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1471 0.16879854679483575 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1451 0.16650352916336278 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1431 0.16420851153188984 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1345 0.15433993571655613 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 1176 0.13494703673060968 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 1141 0.13093075587553202 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 1122 0.1287504891256327 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1019 0.11693114832354701 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1014 0.11635739391567874 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 991 0.11371812363948487 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 982 0.11268536570532203 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 966 0.11084935160014368 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 959 0.11004609542912813 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 951 0.10912808837653895 No Hit CGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAG 905 0.10384954782415116 No Hit CTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTAC 900 0.10327579341628292 No Hit ATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAG 886 0.10166928107425185 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 2.2950176314729537E-4 0.0 10 0.0 0.0 0.0 3.4425264472094305E-4 0.0 11 0.0 0.0 0.0 9.180070525891815E-4 0.0 12 0.0 0.0 0.0 0.0011475088157364768 0.0 13 0.0 0.0 0.0 0.0011475088157364768 0.0 14 0.0 0.0 0.0 0.0013770105788837722 0.0 15 0.0 0.0 0.0 0.0017212632236047153 0.0 16 0.0 0.0 0.0 0.0030982738024884875 0.0 17 0.0 0.0 0.0 0.006081796723403327 0.0 18 0.0 0.0 0.0 0.006770302012845213 0.0 19 0.0 0.0 0.0 0.008147312591728986 0.0 20 0.0 0.0 0.0 0.010098077578480996 0.0 21 0.0 0.0 0.0 0.01388485667041137 0.0 22 0.0 0.0 0.0 0.02122891309112482 0.0 23 0.0 0.0 0.0 0.03568752416940443 0.0 24 0.0 0.0 0.0 0.059326205773575856 0.0 25 0.0 0.0 0.0 0.0693095324704832 0.0 26 0.0 0.0 0.0 0.07917810828581691 0.0 27 0.0 0.0 0.0 0.137127303480509 0.0 28 0.0 0.0 0.0 0.20494507449053478 0.0 29 0.0 0.0 0.0 0.28435268453949897 0.0 30 0.0 0.0 0.0 0.4384631184929078 0.0 31 0.0 0.0 0.0 0.6228677851817597 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3065 0.0 29.575855 1 GTATTGG 250 0.0 25.16 1 ATTGGAC 275 0.0 23.545454 3 CTTACTC 55 1.9019744E-5 23.545454 3 GTTCGCT 45 0.0038250766 20.555555 37 TATTGGA 340 0.0 19.044117 2 TAGAGTG 60 9.23437E-4 18.5 5 AACCCGT 60 9.23437E-4 18.5 29 TAAGGTG 80 1.6159393E-5 18.5 5 GTATTAG 50 0.007033553 18.499998 1 GTTAGTG 50 0.007033553 18.499998 2 GTATCAA 5115 0.0 18.373411 2 CGTCTGT 240 0.0 17.729168 34 ATACCGT 105 4.793965E-7 17.619047 6 AGTATCA 180 0.0 17.472221 1 TATAGTG 85 2.7218926E-5 17.411764 5 TACACTT 140 1.8662831E-9 17.178572 5 TTTTTAC 690 0.0 17.15942 1 CTACGGT 65 0.0015795196 17.076923 6 TCTATAG 65 0.0015795196 17.076923 3 >>END_MODULE