##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088244_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 537228 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.941736097150557 31.0 30.0 33.0 27.0 34.0 2 30.81010669585353 31.0 31.0 34.0 27.0 34.0 3 30.76856753557149 31.0 31.0 34.0 27.0 34.0 4 34.98558898642662 35.0 35.0 37.0 32.0 37.0 5 34.91816137654776 35.0 35.0 37.0 32.0 37.0 6 35.05451130618657 36.0 35.0 37.0 32.0 37.0 7 34.62788797307661 35.0 35.0 37.0 31.0 37.0 8 34.87821185790763 35.0 35.0 37.0 32.0 37.0 9 36.27036937761993 38.0 35.0 39.0 32.0 39.0 10 36.23330690135287 38.0 35.0 39.0 32.0 39.0 11 36.34098743922506 38.0 35.0 39.0 32.0 39.0 12 36.05329208455255 38.0 35.0 39.0 31.0 39.0 13 36.21740676211962 38.0 35.0 39.0 32.0 39.0 14 37.082341203362446 39.0 36.0 40.0 31.0 41.0 15 37.13676874623065 39.0 36.0 40.0 31.0 41.0 16 37.06128682793898 39.0 36.0 40.0 31.0 41.0 17 37.203405258102705 39.0 36.0 40.0 32.0 41.0 18 37.21628619506057 39.0 36.0 40.0 32.0 41.0 19 37.30630756401379 39.0 36.0 40.0 31.0 41.0 20 37.29876700395363 39.0 36.0 40.0 31.0 41.0 21 37.222938863946034 39.0 36.0 40.0 31.0 41.0 22 37.152728450490294 39.0 36.0 40.0 31.0 41.0 23 37.01363480682318 39.0 36.0 40.0 31.0 41.0 24 36.93719612529503 39.0 35.0 40.0 31.0 41.0 25 36.85708302620117 39.0 35.0 40.0 31.0 41.0 26 36.59588293983188 38.0 35.0 40.0 30.0 41.0 27 36.46113195887035 38.0 35.0 40.0 30.0 41.0 28 36.2996269740222 38.0 35.0 40.0 30.0 41.0 29 36.11955259219549 38.0 35.0 40.0 30.0 41.0 30 35.93066817068358 38.0 34.0 40.0 30.0 41.0 31 35.63549926660561 38.0 34.0 40.0 29.0 41.0 32 35.39434467302523 38.0 34.0 40.0 27.0 41.0 33 35.47864966085163 38.0 34.0 40.0 28.0 41.0 34 35.448247299098334 38.0 34.0 40.0 27.0 41.0 35 35.342584526495266 38.0 34.0 40.0 27.0 41.0 36 35.231856865241575 38.0 34.0 40.0 26.0 41.0 37 35.053937992807526 38.0 33.0 40.0 25.0 41.0 38 34.91386152620489 38.0 33.0 40.0 25.0 41.0 39 34.854009843120615 38.0 33.0 40.0 25.0 41.0 40 34.660596618195626 38.0 33.0 40.0 24.0 41.0 41 34.46162150893103 38.0 33.0 40.0 23.0 41.0 42 34.222728524946575 38.0 33.0 40.0 22.0 41.0 43 33.85524209460415 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 1.0 16 3.0 17 12.0 18 39.0 19 98.0 20 188.0 21 420.0 22 718.0 23 1232.0 24 2236.0 25 3311.0 26 5141.0 27 7596.0 28 10594.0 29 14440.0 30 18384.0 31 23041.0 32 27901.0 33 34109.0 34 41258.0 35 49356.0 36 60089.0 37 75585.0 38 84839.0 39 76636.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.01043877087568 25.720550678669017 14.173498030631315 21.095512519823988 2 17.85368595828959 23.17954388081038 36.33801663353362 22.628753527366406 3 19.888576172500315 26.541058917256734 32.80971952318196 20.760645387060986 4 13.086622439634569 15.766862486690938 34.90566388944731 36.24085118422718 5 10.75539621910995 41.095400835399495 34.628500376004226 13.520702569486327 6 31.33269300929959 35.6196996433544 15.211790896974842 17.835816450371166 7 23.630562815043145 36.36240106621397 21.07969055968788 18.927345559055002 8 28.111528066295875 33.46288726574192 19.958751219221636 18.466833448740573 9 24.850901293305636 13.801588897079082 24.666994274311836 36.68051553530345 10 16.504724251155935 28.32223934716731 33.28512289009508 21.887913511581676 11 30.613259174875473 21.72280670404372 25.547625961416752 22.11630815966405 12 20.01738554207897 28.043214426649392 31.636660784620315 20.302739246651328 13 31.38965206578957 21.158614219660926 29.435546918626727 18.016186795922774 14 20.631463736067367 23.26777457615761 28.965355491523155 27.13540619625187 15 22.974044539748487 29.045209855033615 27.513085691736094 20.4676599134818 16 21.602187525594346 28.48380948126308 27.60745903043028 22.306543962712293 17 18.59098930063213 27.406054784933026 28.181330831602224 25.821625082832618 18 19.964521581153626 26.568793882671788 33.3337056147483 20.132978921426282 19 18.973508454510934 24.88887399763229 34.86359608955601 21.27402145830076 20 24.274981944351374 23.55889864266196 33.3746565703947 18.791462842591972 21 23.50138116404953 24.68728361142755 31.787248616974544 20.024086607548377 22 21.431496496831883 24.29340987439225 32.9137721786653 21.36132145011057 23 20.367143931440655 26.866619014645547 34.00046162895456 18.765775424959237 24 18.76242489222453 25.73637263880513 32.22560998309842 23.275592485871922 25 20.124230308174557 26.71565890087635 33.764435211865354 19.39567557908374 26 21.866135048806093 25.438919788246334 31.980276530635038 20.714668632312538 27 20.205387656637406 27.253605545503955 31.52125354598048 21.01975325187816 28 19.867914553969637 26.84632967752984 31.54191516451116 21.743840603989366 29 18.842465396442478 26.589827782617437 32.736566225140905 21.831140595799177 30 18.037965258698353 26.91352647293142 35.16179350294475 19.88671476542548 31 19.74096659146582 26.056348514969436 33.750288518096596 20.452396375468144 32 21.21147818058627 26.50476147929743 31.30067680761241 20.98308353250389 33 22.367598114766913 26.311919706344423 30.702792855175083 20.61768932371358 34 20.075647583521334 29.747891025784213 30.74876960992353 19.42769178077092 35 18.483399971706614 30.737042745352067 30.932862769624812 19.846694513316507 36 19.70690284199632 26.315084098371642 33.68625611472224 20.291756944909796 37 19.723283224254878 26.87667061284967 32.50537946644628 20.89466669644918 38 20.155315806324317 26.412994110508016 33.050771739373225 20.38091834379444 39 21.32316260507643 25.734697372437775 33.03122696508745 19.91091305739835 40 19.31247068283857 26.639713492223045 32.0000074456283 22.047808379310087 41 20.302366965236363 26.123545310371014 31.90042216712457 21.673665557268052 42 17.59681178196222 27.933949831356518 32.27046989360197 22.19876849307929 43 18.2769699271073 27.710394841668712 32.04095840127469 21.971676829949295 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 40.0 1 56.0 2 72.0 3 228.5 4 385.0 5 385.0 6 703.0 7 1021.0 8 1122.0 9 1223.0 10 1928.5 11 2634.0 12 2634.0 13 4826.0 14 7018.0 15 11667.0 16 16316.0 17 15739.5 18 15163.0 19 15163.0 20 16259.5 21 17356.0 22 13703.5 23 10051.0 24 10875.5 25 11700.0 26 11700.0 27 12506.5 28 13313.0 29 13761.5 30 14210.0 31 15009.5 32 15809.0 33 15809.0 34 17016.5 35 18224.0 36 20016.0 37 21808.0 38 22741.0 39 23674.0 40 23674.0 41 25202.0 42 26730.0 43 31259.0 44 35788.0 45 46934.0 46 58080.0 47 58080.0 48 59231.0 49 60382.0 50 53699.0 51 47016.0 52 43626.5 53 40237.0 54 40237.0 55 33783.0 56 27329.0 57 21544.0 58 15759.0 59 13537.0 60 11315.0 61 11315.0 62 9764.5 63 8214.0 64 7040.5 65 5867.0 66 4871.5 67 3876.0 68 3876.0 69 3205.0 70 2534.0 71 2114.0 72 1694.0 73 1355.0 74 1016.0 75 1016.0 76 800.0 77 584.0 78 454.0 79 324.0 80 274.5 81 225.0 82 225.0 83 168.0 84 111.0 85 83.5 86 56.0 87 47.0 88 38.0 89 38.0 90 33.0 91 28.0 92 17.0 93 6.0 94 3.5 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 537228.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.448440923646444 #Duplication Level Percentage of deduplicated Percentage of total 1 82.15523112192056 42.26758554944649 2 10.283581014252526 10.581484205906065 3 2.953033836028617 4.55786960575342 4 1.3423532026447764 2.7624791777974953 5 0.7269407384233476 1.8699983817882762 6 0.4746331091201992 1.4651480084986321 7 0.31860194116096424 1.1474101203585263 8 0.24950852008486565 1.0269459484426129 9 0.1851251722863385 0.8571961340868202 >10 1.1432582612922038 10.948543187469133 >50 0.08772036499641334 3.1028813842881484 >100 0.06533148516728739 7.070989303407196 >500 0.0077076471264777265 2.6130521278787797 >1k 0.005872493048744934 5.659095188639916 >5k 0.0011010924466396752 4.069321676238453 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 7907 1.4718145740728332 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 7309 1.3605024309976397 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6334 1.1790152412011288 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3885 0.7231566485737899 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2581 0.4804291660151742 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 2461 0.4580922811171421 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 2349 0.4372445218789788 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2268 0.42216712457280703 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2236 0.41621062193333186 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 1935 0.36018226898076794 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 1692 0.31495007706225286 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 1669 0.3106688407901301 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 1601 0.2980112726812452 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1371 0.255198909960017 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1363 0.2537097843001482 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1284 0.2390046684089437 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1220 0.2270916631299932 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1036 0.19284177295301064 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1018 0.18949124021830582 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 992 0.1846515818237322 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 869 0.16175627480324925 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 835 0.15542749074880685 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 830 0.15449678721138882 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 807 0.150215550939266 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 730 0.1358827164630287 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 717 0.13346288726574193 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 708 0.1317876208983895 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 659 0.12266672623169306 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 603 0.1122428466126114 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 598 0.11131214307519341 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 597 0.11112600236770981 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 582 0.10833389175545578 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 570 0.10610020326565256 No Hit ATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAG 563 0.10479721831326737 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 563 0.10479721831326737 No Hit ACGCACATGCGAGGGTCCAAAAAAAAAAAAAAAAAAAAAAAAA 549 0.10219124840849694 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.86140707483601E-4 0.0 3 0.0 0.0 0.0 1.86140707483601E-4 0.0 4 0.0 0.0 0.0 1.86140707483601E-4 0.0 5 0.0 0.0 0.0 1.86140707483601E-4 0.0 6 0.0 0.0 0.0 1.86140707483601E-4 0.0 7 0.0 0.0 0.0 1.86140707483601E-4 0.0 8 1.86140707483601E-4 0.0 0.0 1.86140707483601E-4 0.0 9 1.86140707483601E-4 0.0 0.0 3.72281414967202E-4 0.0 10 1.86140707483601E-4 0.0 0.0 3.72281414967202E-4 0.0 11 1.86140707483601E-4 0.0 0.0 3.72281414967202E-4 0.0 12 1.86140707483601E-4 0.0 0.0 3.72281414967202E-4 0.0 13 1.86140707483601E-4 0.0 0.0 7.44562829934404E-4 0.0 14 1.86140707483601E-4 0.0 0.0 9.30703537418005E-4 0.0 15 1.86140707483601E-4 0.0 0.0 0.001675266367352409 0.0 16 1.86140707483601E-4 0.0 0.0 0.002605969904770414 0.0 17 1.86140707483601E-4 0.0 0.0 0.004653517687090025 0.0 18 1.86140707483601E-4 0.0 0.0 0.005398080517024429 0.0 19 1.86140707483601E-4 0.0 0.0 0.007073346884376838 0.0 20 1.86140707483601E-4 0.0 0.0 0.00949317608166365 0.0 21 1.86140707483601E-4 0.0 0.0 0.013215990231335671 0.0 22 1.86140707483601E-4 0.0 0.0 0.021778462775581316 0.0 23 1.86140707483601E-4 0.0 0.0 0.03555287512936779 0.0 24 1.86140707483601E-4 0.0 0.0 0.05770361931991631 0.0 25 1.86140707483601E-4 0.0 0.0 0.06552152903422755 0.0 26 1.86140707483601E-4 0.0 0.0 0.0763176900682764 0.0 27 1.86140707483601E-4 0.0 0.0 0.16026714914338047 0.0 28 1.86140707483601E-4 0.0 0.0 0.2423552011436485 0.0 29 1.86140707483601E-4 0.0 0.0 0.33784538408273584 0.0 30 1.86140707483601E-4 0.0 0.0 0.5453922729269509 0.0 31 1.86140707483601E-4 0.0 0.0 0.7801157050637718 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTGG 125 0.0 29.600002 1 GGTATCA 1895 0.0 29.580475 1 GCAATAC 40 5.934332E-5 27.75 3 ATTGGAC 170 0.0 23.941175 3 TAATGGG 40 0.001929856 23.125 5 CGTCTGT 200 0.0 23.124998 34 CTAGGCA 60 3.7215323E-5 21.583332 4 TTGGACC 395 0.0 20.607595 4 GACAATC 45 0.0038231958 20.555555 22 GGACCCT 405 0.0 20.098764 6 GACCCTC 440 0.0 18.920454 7 TGGACCC 435 0.0 18.712645 5 TCTAGGA 60 9.228088E-4 18.5 2 TAGGAGT 60 9.228088E-4 18.5 4 GTATTGT 50 0.007030125 18.499998 1 GATTGGC 50 0.007030125 18.499998 9 ATTATAC 50 0.007030125 18.499998 3 TAGGAGA 50 0.007030125 18.499998 4 GTGCCCG 50 0.007030125 18.499998 9 GTATCAA 3125 0.0 18.4112 2 >>END_MODULE