##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088240_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2541358 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.80808803797025 31.0 30.0 33.0 27.0 34.0 2 30.67614401434194 31.0 31.0 34.0 27.0 34.0 3 30.63354552959481 31.0 30.0 34.0 27.0 34.0 4 34.857470690866855 35.0 35.0 37.0 32.0 37.0 5 34.76507481433155 35.0 35.0 37.0 32.0 37.0 6 34.877463545081014 35.0 35.0 37.0 32.0 37.0 7 34.44939162447794 35.0 35.0 37.0 30.0 37.0 8 34.70926646304849 35.0 35.0 37.0 31.0 37.0 9 36.12550770100081 38.0 35.0 39.0 31.0 39.0 10 36.0406998935215 37.0 35.0 39.0 30.0 39.0 11 36.13874235743252 38.0 35.0 39.0 31.0 39.0 12 35.86515516507316 37.0 35.0 39.0 30.0 39.0 13 36.04710237597379 37.0 35.0 39.0 31.0 39.0 14 36.9357028801137 38.0 36.0 40.0 31.0 41.0 15 36.98752832147222 38.0 36.0 40.0 31.0 41.0 16 36.904932717074885 38.0 36.0 40.0 31.0 41.0 17 36.98835268388004 38.0 36.0 40.0 31.0 41.0 18 36.98967284420377 38.0 36.0 40.0 31.0 41.0 19 37.06731125642275 39.0 36.0 40.0 31.0 41.0 20 37.02746326963773 39.0 36.0 40.0 31.0 41.0 21 36.96369106595765 39.0 36.0 40.0 31.0 41.0 22 36.88244355970312 39.0 36.0 40.0 31.0 41.0 23 36.75527336172235 38.0 35.0 40.0 30.0 41.0 24 36.68012967869934 38.0 35.0 40.0 30.0 41.0 25 36.593700297242655 38.0 35.0 40.0 30.0 41.0 26 36.32440333081762 38.0 35.0 40.0 30.0 41.0 27 36.17657803426357 38.0 35.0 40.0 30.0 41.0 28 36.01600955079922 38.0 34.0 40.0 29.0 41.0 29 35.8451375209632 38.0 34.0 40.0 29.0 41.0 30 35.67961735418623 38.0 34.0 40.0 28.0 41.0 31 35.42829030778033 38.0 34.0 40.0 27.0 41.0 32 35.18252091991762 37.0 34.0 40.0 27.0 41.0 33 35.34104246627197 38.0 34.0 40.0 27.0 41.0 34 35.3354816598055 38.0 34.0 40.0 27.0 41.0 35 35.257013376312976 38.0 34.0 40.0 27.0 41.0 36 35.1705009683799 38.0 34.0 40.0 26.0 41.0 37 35.016623789328385 38.0 33.0 40.0 25.0 41.0 38 34.892345745857135 38.0 33.0 40.0 25.0 41.0 39 34.86788087313948 38.0 33.0 40.0 25.0 41.0 40 34.72746932939003 38.0 33.0 40.0 24.0 41.0 41 34.57264029703804 38.0 33.0 40.0 24.0 41.0 42 34.38026952519086 38.0 33.0 40.0 23.0 41.0 43 34.0353917078979 37.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 6.0 15 18.0 16 46.0 17 87.0 18 231.0 19 534.0 20 1164.0 21 2299.0 22 4049.0 23 7030.0 24 11764.0 25 18250.0 26 27049.0 27 39447.0 28 54283.0 29 71953.0 30 92505.0 31 113486.0 32 137377.0 33 165409.0 34 197481.0 35 233707.0 36 280888.0 37 345972.0 38 399497.0 39 336821.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.18676550096444 25.421683997295936 13.46142495468958 21.930125547050043 2 18.336495684590677 23.34842237890136 35.38722210723558 22.927859829272382 3 20.130654555556518 26.878188747905646 31.6490632173822 21.342093479155633 4 13.583485679703527 16.332330982096973 35.274054265475385 34.81012907272411 5 11.45682741274547 40.501259562800676 34.66296365958673 13.378949364867129 6 31.887597103595795 36.35430348656112 15.284426672668708 16.47367273717438 7 24.484743983334894 35.041855574854075 21.82478816443807 18.648612277372965 8 27.438676487137982 34.10310550500953 20.208801750874926 18.249416256977568 9 25.04763201406492 13.832801203136274 23.44226984155715 37.67729694124165 10 16.23415512493714 27.94675130383047 33.90010380277001 21.918989768462374 11 31.64020968316939 21.874486003152647 24.89483968807228 21.59046462560568 12 19.921357006765675 27.414594874079135 31.940915054077383 20.723133065077807 13 30.807938118124245 21.047998747126538 28.683483397459153 19.46057973729006 14 20.75957027699364 22.665362377122783 28.32273139006783 28.25233595581575 15 23.088246520167562 29.1203364500397 26.626315536811422 21.16510149298131 16 21.817272497617417 28.559651965602644 27.22658515643998 22.39649038033996 17 19.515825790778003 27.295760770422746 28.098402507635683 25.090010931163576 18 20.68567277809738 26.46687322289894 32.047944445450035 20.79950955355365 19 20.07910731191749 25.05896453785732 33.23467217133517 21.627255978890027 20 24.067762196431985 24.17620815327868 32.15218005491552 19.603849595373813 21 23.422280528756673 24.992267913454143 30.893837074508983 20.691614483280198 22 21.947203030820532 24.54498736502295 31.826173250679364 21.681636353477156 23 21.02147749352905 26.5845662043679 32.68831073780239 19.70564556430066 24 19.965585328788784 25.67194389771138 31.194581794457925 23.167888979041916 25 20.924167315270026 26.563317722257157 32.141044276327854 20.371470686144967 26 22.231499851654117 25.591357061854332 30.98284460512844 21.194298481363113 27 21.072434501553893 26.876850880513487 30.593328448805718 21.4573861691269 28 20.799312808348922 26.436613810411597 30.790349096821462 21.97372428441802 29 20.001943842622723 26.340523452421895 31.666573540603093 21.990959164352287 30 19.38046508992436 26.632453987198968 33.29928329656821 20.687797626308456 31 20.604298961421414 26.023527578562327 32.38123082226117 20.99094263775509 32 21.566501059669672 26.277132147458172 30.45812514411586 21.698241648756294 33 22.445716030563187 26.189659229435602 30.104416615053843 21.260208124947372 34 20.902525342749822 28.598056629565765 30.151241973779374 20.348176053905036 35 19.67581899126373 29.553569390853234 30.334529806505028 20.436081811378013 36 20.63750955197969 26.148893623015727 32.24484704634294 20.968749778661643 37 20.636998014447393 26.472145994385677 31.40938820898118 21.481467782185746 38 20.869314752191546 26.01581516653695 31.999505776045723 21.11536430522579 39 21.691827755082123 25.573689342469656 31.97644723805147 20.75803566439675 40 20.236778918987408 26.316559886485884 31.06465126125481 22.382009933271895 41 21.071883614980653 25.927437220572624 30.9031234481722 22.097555716274528 42 18.933420635738845 27.409991036288474 31.29885675296436 22.357731575008323 43 19.462822632623975 27.173542649245007 30.921302705089172 22.442332013041845 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 196.0 1 284.0 2 372.0 3 961.5 4 1551.0 5 1551.0 6 2778.0 7 4005.0 8 4553.0 9 5101.0 10 7929.5 11 10758.0 12 10758.0 13 19706.0 14 28654.0 15 45638.5 16 62623.0 17 60752.5 18 58882.0 19 58882.0 20 63830.5 21 68779.0 22 56823.5 23 44868.0 24 49133.5 25 53399.0 26 53399.0 27 58743.5 28 64088.0 29 68463.0 30 72838.0 31 77613.0 32 82388.0 33 82388.0 34 90045.5 35 97703.0 36 105123.0 37 112543.0 38 117276.5 39 122010.0 40 122010.0 41 127689.5 42 133369.0 43 149936.5 44 166504.0 45 204848.5 46 243193.0 47 243193.0 48 247681.0 49 252169.0 50 230691.5 51 209214.0 52 195979.0 53 182744.0 54 182744.0 55 158704.5 56 134665.0 57 111719.0 58 88773.0 59 78395.5 60 68018.0 61 68018.0 62 60265.0 63 52512.0 64 45953.5 65 39395.0 66 33866.5 67 28338.0 68 28338.0 69 23977.5 70 19617.0 71 16538.5 72 13460.0 73 10936.5 74 8413.0 75 8413.0 76 6470.0 77 4527.0 78 3550.0 79 2573.0 80 2010.0 81 1447.0 82 1447.0 83 1113.0 84 779.0 85 594.0 86 409.0 87 334.5 88 260.0 89 260.0 90 208.5 91 157.0 92 102.5 93 48.0 94 30.0 95 12.0 96 12.0 97 7.5 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2541358.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.39812276852764 #Duplication Level Percentage of deduplicated Percentage of total 1 75.04116183382399 34.81769039458717 2 13.68686440147984 12.700896296321046 3 4.923033075003112 6.852584790225497 4 2.1432131476490968 3.9776426697498146 5 1.1311349473720045 2.624126907796916 6 0.6840882798571201 1.9044247195992934 7 0.43986195057847294 1.428613814890082 8 0.3032869969938242 1.1257557856494027 9 0.20687249970306487 0.8638646074789501 >10 1.2428140683269229 11.08564670144896 >50 0.12201363543492527 3.913756013813859 >100 0.06400922935400732 5.579709403651583 >500 0.005052280374915026 1.6703553768431783 >1k 0.0054804397287212415 4.948727280686026 >5k 6.850549660901552E-4 2.306775833689404 >10k+ 4.2815935380634696E-4 4.19942940356881 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 29873 1.175473900174631 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 26945 1.0602599082852553 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 23615 0.9292276019356581 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 14461 0.5690264811175757 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10801 0.4250089912558561 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8892 0.34989167209027616 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8649 0.3403298551404406 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8487 0.333955310507217 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8209 0.32301627712427766 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6414 0.2523847486265217 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6015 0.23668448128913752 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5858 0.23050668186064302 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5535 0.21779694163514152 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4769 0.18765557627063956 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4702 0.18501919052726926 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4680 0.18415351162646112 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3807 0.14980179888075587 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3742 0.14724411121927725 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3442 0.13543939893552975 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3302 0.12993053320311423 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3292 0.129537042793656 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3025 0.1190308488611207 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2973 0.11698469873193781 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2812 0.11064950313965999 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2635 0.10368472289224895 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2614 0.10285839303238661 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.934904094582503E-5 0.0 0.0 0.0 0.0 7 3.934904094582503E-5 0.0 0.0 0.0 0.0 8 3.934904094582503E-5 0.0 0.0 0.0 0.0 9 3.934904094582503E-5 0.0 0.0 2.3609424567495017E-4 0.0 10 3.934904094582503E-5 0.0 0.0 3.1479232756660025E-4 0.0 11 3.934904094582503E-5 0.0 0.0 5.115375322957254E-4 0.0 12 3.934904094582503E-5 0.0 0.0 6.295846551332005E-4 0.0 13 3.934904094582503E-5 0.0 0.0 7.869808189165005E-4 0.0 14 3.934904094582503E-5 0.0 0.0 0.0011017731464831007 0.0 15 3.934904094582503E-5 0.0 0.0 0.001534612596887176 0.0 16 3.934904094582503E-5 0.0 0.0 0.0022428953339120265 0.0 17 3.934904094582503E-5 0.0 0.0 0.0038955550536366778 0.0 18 3.934904094582503E-5 0.0 0.0 0.004446441626878228 0.0 19 3.934904094582503E-5 0.0 0.0 0.005430167650523854 0.0 20 3.934904094582503E-5 0.0 0.0 0.006925431206465204 0.0 21 3.934904094582503E-5 0.0 0.0 0.009286373663214706 0.0 22 3.934904094582503E-5 0.0 0.0 0.014441098027117785 0.0 23 3.934904094582503E-5 0.0 0.0 0.02522273524627384 0.0 24 3.934904094582503E-5 0.0 0.0 0.0393096919048792 0.0 25 3.934904094582503E-5 0.0 0.0 0.04466116147351141 0.0 26 3.934904094582503E-5 0.0 0.0 0.05367209185010534 0.0 27 3.934904094582503E-5 0.0 0.0 0.11545008613505063 0.0 28 3.934904094582503E-5 0.0 0.0 0.17714938233810426 0.0 29 3.934904094582503E-5 0.0 0.0 0.24785960891775186 0.0 30 3.934904094582503E-5 0.0 0.0 0.38105611251936955 0.0 31 3.934904094582503E-5 0.0 0.0 0.5729220361712124 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6565 0.0 29.137854 1 ATTGGAC 1085 0.0 18.926268 3 CGATCGA 60 9.2410133E-4 18.5 1 GTATTGG 1070 0.0 18.327103 1 TTGGACC 1600 0.0 17.343748 4 GTATCAA 11505 0.0 17.125162 2 TATTGGA 1285 0.0 16.268482 2 GATCGAT 70 0.002593652 15.857143 26 CGTCTGT 700 0.0 15.857142 34 GGACCCT 1685 0.0 15.700297 6 TGGACCC 1760 0.0 15.241477 5 AACAACG 305 0.0 15.163935 2 TATACTG 435 0.0 14.45977 5 TGCGTCT 775 0.0 14.08387 32 GGCGTAA 80 0.0063013886 13.875001 13 GGGTAGG 405 0.0 13.703704 1 CGGACCA 110 2.4581954E-4 13.454545 9 GACCCTC 1975 0.0 13.3949375 7 CGTTGAT 2370 0.0 13.113924 34 TCTAACG 115 3.5798238E-4 12.869564 2 >>END_MODULE