##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088239_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2325356 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.954190240118074 31.0 30.0 33.0 27.0 34.0 2 30.803469232237987 31.0 31.0 34.0 27.0 34.0 3 30.693623255965967 31.0 31.0 34.0 27.0 34.0 4 34.93386259996319 35.0 35.0 37.0 32.0 37.0 5 34.87174307933925 35.0 35.0 37.0 32.0 37.0 6 34.98598580174391 35.0 35.0 37.0 32.0 37.0 7 34.55529518920974 35.0 35.0 37.0 30.0 37.0 8 34.82330232446129 35.0 35.0 37.0 32.0 37.0 9 36.256869055748886 38.0 35.0 39.0 32.0 39.0 10 36.18707329114338 38.0 35.0 39.0 32.0 39.0 11 36.279458715138674 38.0 35.0 39.0 32.0 39.0 12 36.00765603202262 38.0 35.0 39.0 30.0 39.0 13 36.18596550377663 38.0 35.0 39.0 32.0 39.0 14 37.10998014927607 39.0 36.0 40.0 31.0 41.0 15 37.157095085655705 39.0 36.0 40.0 31.0 41.0 16 37.071283278775375 39.0 36.0 40.0 31.0 41.0 17 37.15777885192633 39.0 36.0 40.0 31.0 41.0 18 37.15047803433109 39.0 36.0 40.0 31.0 41.0 19 37.23042751303456 39.0 36.0 40.0 31.0 41.0 20 37.17948563574782 39.0 36.0 40.0 31.0 41.0 21 37.114259494030165 39.0 36.0 40.0 31.0 41.0 22 37.02931121084256 39.0 36.0 40.0 31.0 41.0 23 36.91080634535099 39.0 35.0 40.0 31.0 41.0 24 36.83563462970831 39.0 35.0 40.0 31.0 41.0 25 36.7593779189079 38.0 35.0 40.0 30.0 41.0 26 36.49424991270154 38.0 35.0 40.0 30.0 41.0 27 36.35391355130139 38.0 35.0 40.0 30.0 41.0 28 36.197078640861875 38.0 35.0 40.0 30.0 41.0 29 36.031454968615556 38.0 34.0 40.0 29.0 41.0 30 35.87248275102823 38.0 34.0 40.0 29.0 41.0 31 35.62371654060711 38.0 34.0 40.0 28.0 41.0 32 35.36519182439162 38.0 34.0 40.0 27.0 41.0 33 35.53793655681108 38.0 34.0 40.0 28.0 41.0 34 35.52986424444257 38.0 34.0 40.0 27.0 41.0 35 35.44490822050473 38.0 34.0 40.0 27.0 41.0 36 35.36747319550211 38.0 34.0 40.0 27.0 41.0 37 35.21393498457871 38.0 34.0 40.0 26.0 41.0 38 35.100044896351356 38.0 33.0 40.0 26.0 41.0 39 35.072779393778845 38.0 33.0 40.0 25.0 41.0 40 34.94124383535252 38.0 33.0 40.0 25.0 41.0 41 34.784333237577385 38.0 33.0 40.0 24.0 41.0 42 34.58863245025708 38.0 33.0 40.0 24.0 41.0 43 34.258631366552045 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 5.0 15 5.0 16 18.0 17 73.0 18 191.0 19 377.0 20 907.0 21 1792.0 22 3257.0 23 5825.0 24 9657.0 25 15003.0 26 22735.0 27 33167.0 28 46397.0 29 61826.0 30 79686.0 31 98721.0 32 120102.0 33 146461.0 34 176936.0 35 210382.0 36 256513.0 37 320160.0 38 375336.0 39 339823.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.70037276012791 24.77255095563862 13.115024108136561 22.412052176096907 2 18.245507354572805 22.842824926591884 35.63910214177958 23.27256557705573 3 20.002356628404424 26.60401246088771 31.59890356573359 21.794727344974273 4 13.208601177626136 15.873440453848787 35.2697823473051 35.64817602121998 5 11.64286242622635 40.059715587634756 34.72345739749096 13.573964588647932 6 32.1773526290168 35.723562327660794 15.355068213211224 16.744016830111175 7 25.102865969769788 34.57990948482727 21.456886601449412 18.860337943953528 8 27.841070356538957 33.4262796750261 20.088493976836236 18.64415599159871 9 25.331304109994342 13.604454543734379 23.223110783897173 37.841130562374104 10 16.467199000927167 27.477943162251282 33.866255317465374 22.188602519356177 11 31.910640779304327 21.447038646985668 24.88105047141169 21.76127010229831 12 20.40225238630128 26.89231240291809 31.61911552467665 21.086319686103977 13 31.19668558276668 20.476133546863363 28.51197838094468 19.815202489425275 14 21.20028073120847 22.209803574162407 27.92462745489293 28.6652882397362 15 23.455333290902555 28.54595167363621 26.37849860408471 21.62021643137653 16 22.319077164958827 28.039276566684844 26.78772626642974 22.853920001926586 17 20.021063441468748 26.776717199430973 27.60497747441682 25.597241884683463 18 21.096210644735688 26.130708588276374 31.596624344831504 21.176456422156438 19 20.321490558864966 24.508892401851586 32.82396329852289 22.345653740760554 20 24.567937124466102 23.67796586845197 31.618642478829045 20.13545452825288 21 23.908726233746574 24.531125556688956 30.465571723211415 21.094576486353056 22 22.40972995102685 24.121166823488533 31.42095231869873 22.048150906785885 23 21.61849626465797 26.013049184726984 32.26774739007705 20.100707160538 24 20.282528782689617 25.099210615492858 30.78836100794889 23.829899593868635 25 21.391176232800483 26.049430710824495 31.820633055755764 20.738760000619262 26 22.715833618594313 25.12105673281855 30.57346918063299 21.589640467954155 27 21.41547358770012 26.52970125864599 30.229865878600954 21.824959275052937 28 21.40713077911511 25.82899134584124 30.365415016023352 22.398462859020295 29 20.428914970438935 25.837721191937923 31.197932703637637 22.535431133985504 30 19.829651889861168 26.156726109894574 32.907950438556504 21.105671561687757 31 21.293212738178585 25.5120076237789 31.852241119209275 21.342538518833244 32 22.213114895095632 25.788481419619192 29.824551595540637 22.17385208974454 33 23.10824665126544 25.74586428916691 29.426849050209945 21.719040009357705 34 21.504277194545697 28.33884360072178 29.553754349871593 20.603124854860933 35 20.200347817710494 29.419753362495893 29.681648745396405 20.698250074397208 36 21.19877558532973 25.943855478472972 31.736043857370653 21.12132507882664 37 21.28499894209747 26.276363705170304 30.79236039556954 21.646276957162687 38 21.493440144218777 25.880209309886315 31.338728349551637 21.28762219634327 39 22.379713041788012 25.388929695066047 31.254354172006348 20.977003091139593 40 20.709990212251373 26.24359452918177 30.335656131792295 22.710759126774565 41 21.80552139113323 25.74724042254175 30.237305599658722 22.2099325866663 42 19.41943513165296 27.49798310452249 30.54543046312049 22.537151300704064 43 20.094557564519153 27.25006407621027 30.191893198288778 22.463485160981804 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 204.0 1 280.5 2 357.0 3 916.0 4 1475.0 5 1475.0 6 2496.0 7 3517.0 8 3850.0 9 4183.0 10 6425.5 11 8668.0 12 8668.0 13 16090.0 14 23512.0 15 38582.0 16 53652.0 17 51822.0 18 49992.0 19 49992.0 20 54602.5 21 59213.0 22 48553.0 23 37893.0 24 41392.5 25 44892.0 26 44892.0 27 49411.0 28 53930.0 29 57382.5 30 60835.0 31 65404.0 32 69973.0 33 69973.0 34 76040.0 35 82107.0 36 90127.0 37 98147.0 38 102530.0 39 106913.0 40 106913.0 41 112921.0 42 118929.0 43 135237.5 44 151546.0 45 187115.0 46 222684.0 47 222684.0 48 228253.5 49 233823.0 50 215614.5 51 197406.0 52 186217.0 53 175028.0 54 175028.0 55 152994.5 56 130961.0 57 109739.5 58 88518.0 59 78367.0 60 68216.0 61 68216.0 62 60883.0 63 53550.0 64 46999.5 65 40449.0 66 35000.0 67 29551.0 68 29551.0 69 25335.5 70 21120.0 71 17679.5 72 14239.0 73 11416.5 74 8594.0 75 8594.0 76 6785.5 77 4977.0 78 3859.5 79 2742.0 80 2207.0 81 1672.0 82 1672.0 83 1269.0 84 866.0 85 682.0 86 498.0 87 392.0 88 286.0 89 286.0 90 233.0 91 180.0 92 109.0 93 38.0 94 26.5 95 15.0 96 15.0 97 9.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2325356.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.10152849937163 #Duplication Level Percentage of deduplicated Percentage of total 1 75.22757690781295 33.92878703846397 2 13.451035138179556 12.13324489261309 3 4.750085720491617 6.427083794916327 4 2.1481022909812553 3.8753078678502626 5 1.1798131067689568 2.660568722943614 6 0.6810067858104891 1.8428668175098348 7 0.4538741557630032 1.432929271989133 8 0.30804978307602787 1.1114812856502974 9 0.21943183376848732 0.890703999394093 >10 1.3578344903653585 11.637094646992722 >50 0.13407571159098966 4.17355781177373 >100 0.07655223837219906 6.439031362725814 >500 0.005604511900838301 1.791805206227057 >1k 0.005604511900838298 4.719864373069762 >5k 9.662951553169479E-4 3.114500346787234 >10k+ 3.865180621267792E-4 3.8211725610931087 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 26930 1.1581022432694177 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 24059 1.0346372770448913 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 21376 0.919257094397589 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 15314 0.6585658282000691 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9105 0.3915529493118473 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9081 0.3905208492807123 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8666 0.37267411957566926 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8421 0.36213809842449934 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7824 0.3364646101500157 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6003 0.2581540202876463 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5999 0.25798200361579043 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5799 0.24938117002299862 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5490 0.23609288212213525 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5076 0.21828915658505624 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4772 0.20521588952401265 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4662 0.20048543104797717 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3543 0.15236376709630697 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3236 0.13916148753137153 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3216 0.13830140417209236 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3173 0.1364522249496421 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3099 0.13326991652030915 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3057 0.13146374146582288 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 2983 0.1282814330364899 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2667 0.11469211595987884 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2396 0.10303798644164593 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2378 0.10226391141829466 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2357 0.10136082389105151 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 1.7201667185583628E-4 0.0 11 0.0 0.0 0.0 2.1502083981979534E-4 0.0 12 0.0 0.0 0.0 3.010291757477135E-4 0.0 13 0.0 0.0 0.0 4.300416796395907E-4 0.0 14 4.300416796395907E-5 0.0 0.0 5.590541835314678E-4 0.0 15 4.300416796395907E-5 0.0 0.0 7.740750233512632E-4 0.0 16 4.300416796395907E-5 0.0 0.0 0.0015911542146664855 0.0 17 4.300416796395907E-5 0.0 0.0 0.002623254245801503 0.0 18 4.300416796395907E-5 0.0 0.0 0.0032683167652608892 0.0 19 4.300416796395907E-5 0.0 0.0 0.003870375116756316 0.0 20 4.300416796395907E-5 0.0 0.0 0.005203504323639047 0.0 21 4.300416796395907E-5 0.0 0.0 0.007181696049981165 0.0 22 4.300416796395907E-5 0.0 0.0 0.01156812118230499 0.0 23 4.300416796395907E-5 0.0 0.0 0.018792821400250112 0.0 24 4.300416796395907E-5 0.0 0.0 0.03083398843015865 0.0 25 4.300416796395907E-5 0.0 0.0 0.03504839689062664 0.0 26 4.300416796395907E-5 0.0 0.0 0.041197992909472785 0.0 27 4.300416796395907E-5 0.0 0.0 0.08476121505696332 0.0 28 4.300416796395907E-5 0.0 0.0 0.13726930414095734 0.0 29 4.300416796395907E-5 0.0 0.0 0.19859324765756298 0.0 30 4.300416796395907E-5 0.0 0.0 0.3103610801958926 0.0 31 4.300416796395907E-5 0.0 0.0 0.46483205152243356 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6245 0.0 28.97198 1 GTATTGG 805 0.0 20.223602 1 ATTGGAC 875 0.0 19.028572 3 TTGGACC 1410 0.0 18.5 4 GTATCAA 10545 0.0 17.842106 2 TGGACCC 1425 0.0 17.785965 5 TCTAACG 85 2.7250571E-5 17.411764 2 GGACCCT 1485 0.0 17.19192 6 AAGACCG 165 5.4569682E-11 16.818182 5 AATGCGT 90 4.4491062E-5 16.444445 35 CGATCGA 70 0.0025935639 15.857142 1 ACAGCGT 130 2.5920963E-7 15.653846 8 AGTATCA 450 0.0 15.622222 1 TATTGGA 1025 0.0 15.521951 2 CGTCTGT 525 0.0 15.504762 34 GACCCTC 1690 0.0 14.997041 7 ATTAGAC 210 9.094947E-12 14.97619 3 TATACCG 150 8.111965E-8 14.8 5 TATACTG 250 0.0 14.799999 5 GACCGTG 180 3.3360266E-9 14.388888 7 >>END_MODULE