##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088238_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2719955 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.86903055381431 31.0 30.0 33.0 27.0 34.0 2 30.75552242592249 31.0 31.0 34.0 27.0 34.0 3 30.690691573941482 31.0 31.0 34.0 27.0 34.0 4 34.932953302536255 35.0 35.0 37.0 32.0 37.0 5 34.88192745835869 35.0 35.0 37.0 32.0 37.0 6 34.99431755304775 35.0 35.0 37.0 32.0 37.0 7 34.55825372110936 35.0 35.0 37.0 30.0 37.0 8 34.8329950311678 35.0 35.0 37.0 32.0 37.0 9 36.255538418834135 38.0 35.0 39.0 32.0 39.0 10 36.20034559395284 38.0 35.0 39.0 32.0 39.0 11 36.27991896924765 38.0 35.0 39.0 32.0 39.0 12 36.03066227198612 38.0 35.0 39.0 30.0 39.0 13 36.20905860574899 38.0 35.0 39.0 32.0 39.0 14 37.1062572726387 39.0 36.0 40.0 31.0 41.0 15 37.15395953241873 39.0 36.0 40.0 31.0 41.0 16 37.05453656402404 39.0 36.0 40.0 31.0 41.0 17 37.172832638775276 39.0 36.0 40.0 31.0 41.0 18 37.17812390278516 39.0 36.0 40.0 31.0 41.0 19 37.25936127619759 39.0 36.0 40.0 31.0 41.0 20 37.22483791092132 39.0 36.0 40.0 31.0 41.0 21 37.157582754126445 39.0 36.0 40.0 31.0 41.0 22 37.08586355288966 39.0 36.0 40.0 31.0 41.0 23 36.977669115849345 39.0 36.0 40.0 31.0 41.0 24 36.899985477700916 39.0 35.0 40.0 31.0 41.0 25 36.81112849293463 39.0 35.0 40.0 31.0 41.0 26 36.55547168978899 38.0 35.0 40.0 30.0 41.0 27 36.41196085964658 38.0 35.0 40.0 30.0 41.0 28 36.230736905573806 38.0 35.0 40.0 30.0 41.0 29 36.06295030616315 38.0 35.0 40.0 30.0 41.0 30 35.90181859626354 38.0 34.0 40.0 29.0 41.0 31 35.63146816767189 38.0 34.0 40.0 28.0 41.0 32 35.41609438391444 38.0 34.0 40.0 27.0 41.0 33 35.51902071909278 38.0 34.0 40.0 28.0 41.0 34 35.49214931864682 38.0 34.0 40.0 27.0 41.0 35 35.38100115626913 38.0 34.0 40.0 27.0 41.0 36 35.28698342435813 38.0 34.0 40.0 27.0 41.0 37 35.11791445079054 38.0 34.0 40.0 26.0 41.0 38 34.97913568423007 38.0 33.0 40.0 25.0 41.0 39 34.90944041353625 38.0 33.0 40.0 25.0 41.0 40 34.73241211711223 38.0 33.0 40.0 24.0 41.0 41 34.555025358875426 38.0 33.0 40.0 23.0 41.0 42 34.339861872714806 38.0 33.0 40.0 22.0 41.0 43 33.996186333965085 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 4.0 14 2.0 15 9.0 16 39.0 17 99.0 18 204.0 19 478.0 20 1129.0 21 2112.0 22 4123.0 23 6915.0 24 11610.0 25 17961.0 26 27270.0 27 39488.0 28 54921.0 29 74003.0 30 94267.0 31 116261.0 32 142046.0 33 172193.0 34 206219.0 35 244993.0 36 298193.0 37 371003.0 38 425073.0 39 409339.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.516683180420266 25.38545674468879 13.463899218920902 21.633960855970045 2 17.99647420637474 22.81618629719977 36.126847686818344 23.060491809607147 3 20.06915555588236 26.683860578575747 32.18733398162838 21.05964988391352 4 12.890507379717677 15.587132875360071 34.945284021243 36.57707572367925 5 11.03459432233254 40.80416771601001 34.65531598868364 13.505921972973816 6 31.94008724409044 35.32359910366164 15.130728265724985 17.60558538652294 7 24.328086310251457 35.60367726671949 21.08310615432976 18.985130268699297 8 28.169473392023033 33.24955743753114 20.0236400969869 18.557329073458938 9 24.999862130072003 13.535812173363162 24.007492771020107 37.456832925544724 10 16.561707822372064 27.746120799792646 33.460957993790345 22.231213384044956 11 31.01172629694241 21.22601293036098 25.517738344935854 22.244522427760753 12 20.262173455075544 27.285819066859563 31.776408065574614 20.675599412490282 13 31.4765133981996 20.48813307573103 29.285300675930298 18.750052850139063 14 20.991303164942067 22.453900891742695 28.47675788753858 28.07803805577666 15 23.230016673069958 28.519515947874137 27.24909051804166 21.001376861014247 16 21.932899625177622 28.15395842945931 27.324275585441672 22.588866359921393 17 19.143993191063824 26.658124858683323 28.014434062328235 26.183447887924615 18 20.54574432297593 25.903774143322224 32.86502901702418 20.685452516677667 19 19.425137548231497 24.181797125320088 34.331854754949994 22.061210571498428 20 24.76857153886737 22.95041645909583 32.89197799228296 19.38903400975384 21 23.912270607418137 23.99183074719986 31.49287396298836 20.60302468239364 22 21.96014272294946 23.567522256802043 32.59818636705386 21.87414865319463 23 20.9364860815712 25.992856499464146 33.796735607758215 19.273921811206435 24 19.43624067309937 24.751365371853577 31.936079824850044 23.876314130197006 25 20.755674266669853 25.99634920430669 33.24610149800272 20.00187503102073 26 22.42893724344704 24.7497844633459 31.656111957734595 21.165166335472463 27 20.793064591142134 26.465584908573852 31.23639913160328 21.504951368680732 28 20.580083126375253 25.80090479438079 31.280002794163874 22.339009285080085 29 19.518668507383392 25.80164010066343 32.45498546850959 22.224705923443587 30 18.804759637567532 26.09899796136333 34.63053616695864 20.46570623411049 31 20.509383427299348 25.38961122518571 33.309742256765276 20.791263090749663 32 21.809221108437455 25.698072210753487 30.759810364509704 21.73289631629935 33 22.883981536459245 25.57134217294036 30.294986497938385 21.24968979266201 34 20.840565377000722 28.918934320604567 30.362524379998934 19.877975922395773 35 19.154324244334926 30.18049930973123 30.54701272631349 20.11816371962036 36 20.46894158175411 25.813699123698736 33.11580522471879 20.601554069828364 37 20.566921143915984 26.473342389855713 31.843909182321028 21.115827283907272 38 20.873176210635837 25.884362057460507 32.5065304389227 20.73593129298095 39 22.139410394657265 25.211924461985586 32.31700524457206 20.33165989878509 40 20.058309788213407 26.29315558529461 31.127316444573534 22.52121818191845 41 21.511164706769044 25.668145245050013 30.946467864358052 21.874222183822894 42 18.487732333806996 27.820533795595882 31.492432779218777 22.199301091378352 43 19.344658275596473 27.617221608445732 30.890952240018677 22.147167875939125 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 191.0 1 281.0 2 371.0 3 1084.0 4 1797.0 5 1797.0 6 3230.0 7 4663.0 8 5222.5 9 5782.0 10 8912.0 11 12042.0 12 12042.0 13 22474.5 14 32907.0 15 54240.5 16 75574.0 17 72807.5 18 70041.0 19 70041.0 20 74846.5 21 79652.0 22 63199.0 23 46746.0 24 50753.0 25 54760.0 26 54760.0 27 58587.5 28 62415.0 29 64761.5 30 67108.0 31 72013.5 32 76919.0 33 76919.0 34 83254.5 35 89590.0 36 98103.0 37 106616.0 38 111712.0 39 116808.0 40 116808.0 41 124225.5 42 131643.0 43 154301.5 44 176960.0 45 230458.0 46 283956.0 47 283956.0 48 290045.5 49 296135.0 50 270161.5 51 244188.0 52 227259.0 53 210330.0 54 210330.0 55 179995.0 56 149660.0 57 120789.0 58 91918.0 59 80326.5 60 68735.0 61 68735.0 62 60104.0 63 51473.0 64 44836.5 65 38200.0 66 32077.5 67 25955.0 68 25955.0 69 21811.0 70 17667.0 71 14872.0 72 12077.0 73 9763.5 74 7450.0 75 7450.0 76 5860.5 77 4271.0 78 3364.5 79 2458.0 80 1930.0 81 1402.0 82 1402.0 83 1045.5 84 689.0 85 527.5 86 366.0 87 300.5 88 235.0 89 235.0 90 194.0 91 153.0 92 95.5 93 38.0 94 25.0 95 12.0 96 12.0 97 6.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2719955.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.77844237024524 #Duplication Level Percentage of deduplicated Percentage of total 1 71.67153516138883 27.076389606815333 2 14.28015923719452 10.789643455605567 3 5.519051047926152 6.255034558575591 4 2.7086362382861915 4.0931223212021095 5 1.5284028088939134 2.8870338717159822 6 0.9015950447873464 2.0436513864478463 7 0.5995629171095507 1.5855387177951497 8 0.4249600874821806 1.2843464139679948 9 0.3084839084252955 1.048863740093373 >10 1.7548052279144448 12.486636331966714 >50 0.17173875615494402 4.501823282045999 >100 0.11264945788526652 7.92664345959593 >500 0.00851682345925648 2.1676005126850644 >1k 0.008219724966491662 6.573399984081648 >5k 7.922626473726905E-4 2.282196718397367 >10k+ 8.912954782942766E-4 6.998075639008346 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38247 1.406162969607953 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33932 1.247520639128221 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 30691 1.1283642560262945 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 21878 0.8043515425806678 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12934 0.47552257298374423 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 12876 0.4733901847640862 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 12646 0.46493416251371805 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 12147 0.44658827076183244 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 11698 0.4300806447165486 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 9177 0.3373952877896877 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 8727 0.3208508964302718 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 8616 0.31676994656161594 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 8167 0.30026232051633206 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 7065 0.2597469443428292 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6984 0.2567689538981343 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6795 0.24982030952717965 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5469 0.2010695029881009 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4821 0.17724557943054206 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4575 0.16820131215406137 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4569 0.16798072026926916 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4559 0.1676130671279488 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4429 0.1628335762907842 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4415 0.16231886189293573 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3934 0.14463474579542676 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3767 0.13849493833537688 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3538 0.1300756813991408 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 3211 0.11805342367796526 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3147 0.11570044357351501 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 3112 0.11441365757889375 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3082 0.1133106981549327 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 3047 0.11202391216031148 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 3029 0.11136213650593484 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2877 0.10577380875786548 No Hit CGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAG 2877 0.10577380875786548 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 2772 0.10191345077400177 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.6765314132035276E-5 0.0 2 0.0 0.0 0.0 3.6765314132035276E-5 0.0 3 0.0 0.0 0.0 7.353062826407055E-5 0.0 4 0.0 0.0 0.0 1.1029594239610581E-4 0.0 5 0.0 0.0 0.0 1.1029594239610581E-4 0.0 6 0.0 0.0 0.0 1.1029594239610581E-4 0.0 7 0.0 0.0 0.0 1.470612565281411E-4 0.0 8 0.0 0.0 0.0 1.470612565281411E-4 0.0 9 0.0 0.0 0.0 1.8382657066017637E-4 0.0 10 0.0 0.0 0.0 4.7794908371645854E-4 0.0 11 0.0 0.0 0.0 5.514797119805291E-4 0.0 12 0.0 0.0 0.0 8.456022250368112E-4 0.0 13 0.0 0.0 0.0 9.558981674329171E-4 0.0 14 0.0 0.0 0.0 0.0010294287956969877 0.0 15 0.0 0.0 0.0 0.0014338472511493756 0.0 16 0.0 0.0 0.0 0.002279449476186187 0.0 17 0.0 0.0 0.0 0.0038603579838637036 0.0 18 0.0 0.0 0.0 0.004338307067580162 0.0 19 0.0 0.0 0.0 0.0052206746067490085 0.0 20 0.0 0.0 0.0 0.006580991229634314 0.0 21 0.0 0.0 0.0 0.009632512302593241 0.0 22 0.0 0.0 0.0 0.015772319762643133 0.0 23 0.0 0.0 0.0 0.026581322117461503 0.0 24 0.0 0.0 0.0 0.04011095771805048 0.0 25 0.0 0.0 0.0 0.045294867010667456 0.0 26 0.0 0.0 0.0 0.05220674606749009 0.0 27 0.0 0.0 0.0 0.10187668545986973 0.0 28 0.0 0.0 0.0 0.15882615705039238 0.0 29 0.0 0.0 0.0 0.2277243557338265 0.0 30 0.0 0.0 0.0 0.3611824460331145 0.0 31 0.0 0.0 0.0 0.5329867589721153 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8445 0.0 30.033749 1 GTATTGG 1045 0.0 24.784689 1 ATTGGAC 1100 0.0 23.713636 3 TATTGGA 1250 0.0 21.311998 2 TTGGACC 1865 0.0 19.839142 4 ACGTTTA 95 1.6782178E-7 19.473684 26 ACGCATA 90 2.1544165E-6 18.5 7 GCGCATA 120 5.182301E-9 18.5 26 CGCCGGA 195 0.0 18.025642 14 GGACCCT 2015 0.0 17.719604 6 CGTCTGT 775 0.0 17.664516 34 GTATCAA 15045 0.0 17.6331 2 TGGACCC 2120 0.0 17.627357 5 GCCGGAA 210 0.0 17.619047 15 AGTATCA 625 0.0 16.871998 1 ACGGACC 100 5.883734E-6 16.65 8 TCGTGTC 280 0.0 16.517859 34 TCTAACG 90 4.4495508E-5 16.444445 2 TATACCG 250 0.0 16.279999 5 CGCTATC 70 0.002593715 15.857143 15 >>END_MODULE