##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088237_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1109364 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.73207080813872 31.0 30.0 31.0 26.0 34.0 2 30.501955174316095 31.0 30.0 33.0 27.0 34.0 3 30.479643291110943 31.0 30.0 34.0 27.0 34.0 4 34.63255432842602 35.0 35.0 37.0 32.0 37.0 5 34.48573506982379 35.0 35.0 37.0 30.0 37.0 6 34.638778615495006 35.0 35.0 37.0 31.0 37.0 7 34.24610227121125 35.0 35.0 37.0 30.0 37.0 8 34.4916303395459 35.0 35.0 37.0 30.0 37.0 9 35.86872838851811 37.0 35.0 39.0 30.0 39.0 10 35.73041670723045 37.0 35.0 39.0 30.0 39.0 11 35.865361594571304 37.0 35.0 39.0 30.0 39.0 12 35.56929105325214 37.0 35.0 39.0 30.0 39.0 13 35.763683515960494 37.0 35.0 39.0 30.0 39.0 14 36.58764120703394 38.0 35.0 40.0 30.0 41.0 15 36.65379172210383 38.0 35.0 40.0 31.0 41.0 16 36.54318240000577 38.0 35.0 40.0 30.0 41.0 17 36.63914549237221 38.0 35.0 40.0 30.0 41.0 18 36.629890640042404 38.0 35.0 40.0 30.0 41.0 19 36.71728576012923 38.0 35.0 40.0 30.0 41.0 20 36.67766125455667 38.0 35.0 40.0 30.0 41.0 21 36.61320540417753 38.0 35.0 40.0 30.0 41.0 22 36.52784838880656 38.0 35.0 40.0 30.0 41.0 23 36.391570305147816 38.0 35.0 40.0 30.0 41.0 24 36.32178978225362 38.0 35.0 40.0 30.0 41.0 25 36.21907687648058 38.0 34.0 40.0 30.0 41.0 26 35.95091241468084 38.0 34.0 40.0 29.0 41.0 27 35.774912472371554 38.0 34.0 40.0 28.0 41.0 28 35.5997715808337 38.0 34.0 40.0 27.0 41.0 29 35.417532928777206 38.0 34.0 40.0 27.0 41.0 30 35.240747851922364 38.0 34.0 40.0 27.0 41.0 31 34.989782433899066 37.0 33.0 40.0 26.0 41.0 32 34.758311068323835 37.0 33.0 40.0 25.0 41.0 33 34.92440353211389 37.0 33.0 40.0 26.0 41.0 34 34.908334865742894 37.0 33.0 40.0 26.0 41.0 35 34.818322029559276 37.0 33.0 40.0 25.0 41.0 36 34.73188691899142 37.0 33.0 40.0 25.0 41.0 37 34.58433480805218 37.0 33.0 40.0 25.0 41.0 38 34.45603516970084 37.0 33.0 40.0 24.0 41.0 39 34.426850880324224 37.0 33.0 40.0 24.0 41.0 40 34.28902235875691 37.0 33.0 40.0 24.0 41.0 41 34.121561543370795 37.0 33.0 40.0 23.0 41.0 42 33.92885202692714 37.0 33.0 40.0 22.0 41.0 43 33.56255115543681 37.0 32.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 11.0 16 33.0 17 73.0 18 147.0 19 345.0 20 676.0 21 1311.0 22 2303.0 23 3923.0 24 6387.0 25 9624.0 26 14197.0 27 20070.0 28 27007.0 29 34979.0 30 44278.0 31 53817.0 32 64455.0 33 76605.0 34 90262.0 35 105530.0 36 126333.0 37 152283.0 38 171723.0 39 102991.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.334577289329744 26.493558471340332 14.053547798558451 21.11831644077147 2 19.746539458644776 24.554339243025733 33.78259975986241 21.916521538467084 3 21.681341741754736 26.623813284007774 31.659220959035988 20.035624015201503 4 15.009050230582568 17.659127211627563 34.53014520031297 32.8016773574769 5 11.384090343656366 41.18585063153302 34.626957427859566 12.803101596951047 6 32.13192423767131 36.82452287977616 14.792980482510702 16.250572400041825 7 24.101737572158463 35.4027172325765 21.880645126396747 18.61490006886829 8 27.131942266019088 34.921089921793026 20.19851013733995 17.74845767484793 9 24.824494034419722 13.891563093808704 23.600098795345804 37.68384407642577 10 16.328995712858898 28.699867671927336 34.01913168265781 20.95200493255595 11 31.942085735610675 22.05939619457635 24.395058790442093 21.60345927937088 12 19.431043372599074 28.039038584269903 32.00969203976332 20.520226003367696 13 30.66567871320865 21.20386095095929 28.836071839360212 19.294388496471854 14 20.55312773805532 22.955224795468396 28.730245437926595 27.761402028549693 15 23.26576308587623 29.490500863557855 26.460927161869325 20.782808888696586 16 21.629870808859852 28.634785336463054 27.5575014152253 22.177842439451794 17 19.3653300449627 27.747610342502547 28.579077741841267 24.307981870693478 18 20.254307873700604 26.474177997483245 32.365301199606265 20.90621292920989 19 19.683530383174503 25.375260058916645 33.77701097205246 21.1641985858564 20 23.493641401740096 24.579038079476167 32.72073007597145 19.206590442812278 21 23.180308717427284 24.902015929848094 31.52968728027951 20.38798807244511 22 21.62130734366718 24.911570954168337 32.18817268272632 21.278949019438166 23 20.817693741639353 26.977799892551047 32.817001453084835 19.38750491272477 24 19.969189553654164 25.75466663782131 31.663637904240627 22.612505904283896 25 20.64381032735874 26.786248697451875 32.45553308021533 20.114407894974057 26 21.850357502136358 25.78639652990362 31.428998957961497 20.934247009998522 27 21.078383650451972 26.90568650145489 31.149829992680488 20.86609985541265 28 20.665083777732107 26.724321322848045 31.373201221600844 21.237393677819004 29 20.015432265694578 26.32454271095871 32.072430690016986 21.587594333329726 30 19.457905610782394 26.714946582005545 33.546788970977964 20.280358836234093 31 20.618841065691694 26.18031592876639 32.56830039554195 20.632542609999962 32 21.29977176111718 26.7265748663198 30.807742093668082 21.16591127889493 33 22.199115889825162 26.609751172744023 30.41751850609899 20.773614431331826 34 20.855553271964837 28.66948990592808 30.640258742847255 19.834698079259827 35 19.652251199786544 29.524123732156443 30.737521679088196 20.086103388968816 36 20.67968673942908 26.407112543763816 32.44922315849442 20.463977558312692 37 20.4140390349786 27.034679329778143 31.77658550304499 20.77469613219827 38 20.920004615257028 26.573153626762725 32.0013088580484 20.505532899931854 39 21.72515062684565 26.127763295005067 31.86420327322682 20.282882804922462 40 20.247366959807604 26.928221936172434 31.10782394236698 21.716587161652985 41 21.01564500019831 26.50374448783267 30.97234090884507 21.508269603123953 42 19.00927017642541 27.989190202674685 31.110888761488564 21.89065085941134 43 19.58230121042327 27.702719756545193 30.79313913197111 21.921839901060427 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 90.0 1 117.5 2 145.0 3 344.5 4 544.0 5 544.0 6 1055.5 7 1567.0 8 1778.5 9 1990.0 10 3185.5 11 4381.0 12 4381.0 13 8361.5 14 12342.0 15 20264.5 16 28187.0 17 26807.0 18 25427.0 19 25427.0 20 28958.0 21 32489.0 22 26815.0 23 21141.0 24 23093.0 25 25045.0 26 25045.0 27 27718.5 28 30392.0 29 32216.0 30 34040.0 31 36927.5 32 39815.0 33 39815.0 34 43173.0 35 46531.0 36 50120.5 37 53710.0 38 55297.0 39 56884.0 40 56884.0 41 59053.5 42 61223.0 43 66627.0 44 72031.0 45 86523.5 46 101016.0 47 101016.0 48 102536.0 49 104056.0 50 95528.0 51 87000.0 52 81302.0 53 75604.0 54 75604.0 55 65826.0 56 56048.0 57 47292.5 58 38537.0 59 33823.5 60 29110.0 61 29110.0 62 25482.0 63 21854.0 64 19039.0 65 16224.0 66 13775.0 67 11326.0 68 11326.0 69 9588.5 70 7851.0 71 6585.5 72 5320.0 73 4278.5 74 3237.0 75 3237.0 76 2562.5 77 1888.0 78 1469.5 79 1051.0 80 805.0 81 559.0 82 559.0 83 446.0 84 333.0 85 262.0 86 191.0 87 145.5 88 100.0 89 100.0 90 81.0 91 62.0 92 38.0 93 14.0 94 10.0 95 6.0 96 6.0 97 4.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1109364.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.97574235720772 #Duplication Level Percentage of deduplicated Percentage of total 1 81.50708238663617 45.624194439620496 2 11.3003419665564 12.650900609366062 3 3.2076743519657724 5.386558592743781 4 1.2914339833207094 2.8915590368681015 5 0.6659978397071925 1.863986174295337 6 0.4194270245969695 1.4086643439894115 7 0.2706126888837365 1.0603422306083072 8 0.1785307742759841 0.7994714098964236 9 0.14546753096750925 0.7328387731298792 >10 0.8938372795414959 9.508423080605954 >50 0.0683255291168432 2.609742433425032 >100 0.04056063759476618 4.455728284682977 >500 0.0056784884738814885 2.1360031243646853 >1k 0.004380548251280005 4.98700423334345 >5k 3.2448505565037077E-4 1.40111633514874 >10k+ 3.2448505565037077E-4 2.4834668979114234 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 14821 1.3359907117952268 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 12525 1.1290252793492488 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9618 0.8669832444535788 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5810 0.5237235028358591 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4651 0.41924922748529786 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4036 0.3638120580801252 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 3872 0.3490288129054125 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3813 0.3437104503120707 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3577 0.3224369999387036 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 2812 0.253478569703001 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2763 0.24906162449836122 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2348 0.21165280286722846 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 2314 0.20858798374564164 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2234 0.2013766446360257 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1847 0.16649179169325848 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1690 0.15233953869063716 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1600 0.1442267821923192 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1556 0.14026054568203042 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1471 0.13259849787806346 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1411 0.1271899935458515 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1383 0.12466602485748592 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1228 0.110694055332605 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 1222 0.1101532048993838 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1218 0.10979263794390298 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1204 0.1085306535997202 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1185 0.1068179605611864 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1129 0.10177002318445523 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 9.01417388701995E-5 0.0 0.0 0.0 0.0 9 9.01417388701995E-5 0.0 0.0 0.0 0.0 10 9.01417388701995E-5 0.0 0.0 9.01417388701995E-5 0.0 11 9.01417388701995E-5 0.0 0.0 2.704252166105985E-4 0.0 12 9.01417388701995E-5 0.0 0.0 4.507086943509975E-4 0.0 13 9.01417388701995E-5 0.0 0.0 4.507086943509975E-4 0.0 14 9.01417388701995E-5 0.0 0.0 7.21133910961596E-4 0.0 15 9.01417388701995E-5 0.0 0.0 9.01417388701995E-4 0.0 16 9.01417388701995E-5 0.0 0.0 0.001622551299663591 0.0 17 9.01417388701995E-5 0.0 0.0 0.0024338269494953864 0.0 18 9.01417388701995E-5 0.0 0.0 0.002523968688365586 0.0 19 9.01417388701995E-5 0.0 0.0 0.003245102599327182 0.0 20 9.01417388701995E-5 0.0 0.0 0.004597228682380175 0.0 21 9.01417388701995E-5 0.0 0.0 0.005859213026562967 0.0 22 9.01417388701995E-5 0.0 0.0 0.009645166059111346 0.0 23 9.01417388701995E-5 0.0 0.0 0.016856505168727307 0.0 24 9.01417388701995E-5 0.0 0.0 0.02578053731687706 0.0 25 9.01417388701995E-5 0.0 0.0 0.030828474693608228 0.0 26 9.01417388701995E-5 0.0 0.0 0.03776938858661359 0.0 27 9.01417388701995E-5 0.0 0.0 0.07923458846690536 0.0 28 9.01417388701995E-5 0.0 0.0 0.12268290660234152 0.0 29 9.01417388701995E-5 0.0 0.0 0.17126930385337905 0.0 30 9.01417388701995E-5 0.0 0.0 0.27538301224845946 0.0 31 9.01417388701995E-5 0.0 0.0 0.40671952578234016 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3080 0.0 30.512985 1 ACGGACC 40 0.0019311449 23.125002 8 CGTGCGG 45 0.0038257255 20.555555 10 TAAACGT 65 6.901853E-5 19.923077 4 GTATCAA 4995 0.0 19.25926 2 GTATTGG 330 0.0 19.060606 1 GTAGACC 60 9.2365383E-4 18.5 4 ATTGGAC 355 0.0 17.71831 3 TATACTG 190 0.0 17.526316 5 CGTCTGT 265 0.0 17.452831 34 GGACCCT 545 0.0 16.633028 6 TTGGACC 590 0.0 16.305084 4 GTGGTAT 490 0.0 15.857142 1 TATTGGA 410 0.0 15.341464 2 TACCGTG 85 5.3639436E-4 15.235293 7 GTAGTGT 110 1.451698E-5 15.136364 6 TAGACAG 160 1.0959411E-8 15.031251 5 TGGACCC 605 0.0 14.983472 5 AACGTGA 75 0.004104287 14.8 6 CTTGCGC 75 0.004104287 14.8 8 >>END_MODULE