##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088236_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3284491 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.902004602844094 31.0 30.0 33.0 27.0 34.0 2 30.78346294753129 31.0 31.0 34.0 27.0 34.0 3 30.685726037915767 31.0 31.0 34.0 27.0 34.0 4 34.93383206104081 35.0 35.0 37.0 32.0 37.0 5 34.87962914192793 35.0 35.0 37.0 32.0 37.0 6 34.997982640232536 36.0 35.0 37.0 32.0 37.0 7 34.56366937829941 35.0 35.0 37.0 30.0 37.0 8 34.83495829338549 35.0 35.0 37.0 32.0 37.0 9 36.2678752963549 38.0 35.0 39.0 32.0 39.0 10 36.206475523909184 38.0 35.0 39.0 32.0 39.0 11 36.29965160507366 38.0 35.0 39.0 32.0 39.0 12 36.03267934057362 38.0 35.0 39.0 30.0 39.0 13 36.209101501572086 38.0 35.0 39.0 32.0 39.0 14 37.12827345241622 39.0 36.0 40.0 31.0 41.0 15 37.17549994808937 39.0 36.0 40.0 32.0 41.0 16 37.09487040762176 39.0 36.0 40.0 31.0 41.0 17 37.187111792968835 39.0 36.0 40.0 31.0 41.0 18 37.18097172438591 39.0 36.0 40.0 31.0 41.0 19 37.26275608610284 39.0 36.0 40.0 31.0 41.0 20 37.217398982064495 39.0 36.0 40.0 31.0 41.0 21 37.1491342189703 39.0 36.0 40.0 31.0 41.0 22 37.0751656801617 39.0 36.0 40.0 31.0 41.0 23 36.957791633467714 39.0 36.0 40.0 31.0 41.0 24 36.88174940957366 39.0 35.0 40.0 31.0 41.0 25 36.80077126105689 39.0 35.0 40.0 30.0 41.0 26 36.53517455216044 38.0 35.0 40.0 30.0 41.0 27 36.40464352010707 38.0 35.0 40.0 30.0 41.0 28 36.24931656077 38.0 35.0 40.0 30.0 41.0 29 36.088592113663886 38.0 35.0 40.0 30.0 41.0 30 35.931766900868354 38.0 34.0 40.0 29.0 41.0 31 35.685807024589195 38.0 34.0 40.0 29.0 41.0 32 35.439016882676796 38.0 34.0 40.0 27.0 41.0 33 35.59433988401856 38.0 34.0 40.0 28.0 41.0 34 35.58868147301972 38.0 34.0 40.0 28.0 41.0 35 35.507921318706614 38.0 34.0 40.0 27.0 41.0 36 35.435076241645966 38.0 34.0 40.0 27.0 41.0 37 35.279239005374045 38.0 34.0 40.0 26.0 41.0 38 35.16200409743854 38.0 34.0 40.0 26.0 41.0 39 35.1357839007627 38.0 34.0 40.0 25.0 41.0 40 34.99483846964416 38.0 33.0 40.0 25.0 41.0 41 34.840353041003915 38.0 33.0 40.0 24.0 41.0 42 34.6468408651447 38.0 33.0 40.0 24.0 41.0 43 34.317303959730744 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 2.0 15 11.0 16 33.0 17 114.0 18 235.0 19 640.0 20 1227.0 21 2483.0 22 4507.0 23 7992.0 24 13006.0 25 20875.0 26 31420.0 27 45703.0 28 64424.0 29 86169.0 30 110710.0 31 138620.0 32 169109.0 33 205729.0 34 248042.0 35 296917.0 36 361286.0 37 451850.0 38 528166.0 39 495219.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.33562308436833 25.199764590616937 13.297281070339363 22.167331254675382 2 17.962022121540294 22.900291095332577 35.99927660024034 23.138410182886783 3 19.814363930362422 26.830763122809593 31.787086644475504 21.56778630235248 4 13.097402306780564 15.854389614707424 35.52580902185453 35.522399056657484 5 11.371777240369969 40.30633665916576 34.937133333597195 13.384752766867072 6 31.99710396527194 36.03748647811792 15.300209377952322 16.66520017865782 7 24.728184671536624 34.93716377971503 21.644327842578956 18.690323706169387 8 27.532576584925945 33.75284024221713 20.20848892568133 18.50609424717559 9 25.121244052731456 13.699261164058601 23.51502866045302 37.66446612275692 10 16.227476342605293 27.699725771816695 34.01321544190561 22.059582443672397 11 31.622586269836027 21.671120426270008 25.026313057335216 21.679980246558753 12 20.127502252251567 27.08885486366076 31.8395757516157 20.94406713247197 13 30.959317592893388 20.72540311421161 28.73608117665721 19.579198116237798 14 20.97868436844552 22.454773053115385 28.144056415438495 28.4224861630006 15 23.085677506803943 28.917448700574916 26.61788386693707 21.37898992568407 16 22.09222068198695 28.374533527417185 26.971180618244954 22.562065172350906 17 19.67872647542648 27.00875112764809 27.823154333502515 25.48936806342292 18 20.84176817656069 26.294272080514148 31.998139133278187 20.865820609646974 19 19.963915261147008 24.84019593903591 33.25114911260222 21.944739687214852 20 24.32571743993209 23.868568980703557 31.975669898319097 19.83004368104525 21 23.729643345041897 24.698621491122978 30.77785873062219 20.79387643321294 22 22.029714802080445 24.39848366154756 31.679794525239984 21.892007011132016 23 21.14711229228517 26.366946963776122 32.693284895589606 19.792655848349106 24 19.993082642028856 25.39011371929471 31.016160494883376 23.600643143793057 25 21.142697605199707 26.267388158469608 32.1579203596539 20.43199387667678 26 22.487685306490413 25.328186315626986 30.860215479354338 21.323912898528267 27 21.10272185248795 26.783906547468085 30.39868277915817 21.714688820885794 28 20.977557862085785 26.077252152616648 30.704788047828412 22.240401937469155 29 20.06965462837316 26.091866289175403 31.542025842055892 22.296453240395543 30 19.512764687131128 26.380343255621646 33.278702849239046 20.828189208008183 31 20.87233607886275 25.794407717969086 32.28110535239706 21.052150850771092 32 21.836016600441287 25.98795368901909 30.20988640248976 21.966143308049862 33 22.74041853060337 25.921794274972896 29.861339245563467 21.476447948860265 34 21.11173390336585 28.586377615283464 29.84017919367111 20.461709287679582 35 19.85016856493137 29.728015695582666 30.020237534522092 20.401578204963876 36 20.910363280033344 26.108124516097014 32.01369709948969 20.967815104379948 37 20.854098854282142 26.454083753007694 31.21214215535984 21.479675237350325 38 21.07921744952262 26.060324111102755 31.744583863983795 21.11587457539083 39 22.032972536688334 25.534915455697703 31.674253331794787 20.757858675819175 40 20.3899173418347 26.421019269043516 30.742175880524563 22.44688750859722 41 21.458271616515315 25.780615626591764 30.694893059533424 22.0662196973595 42 19.039784246630603 27.611827829639356 31.034732626760132 22.313655296969912 43 19.687525403479565 27.36162163330635 30.63908532554968 22.311767637664406 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 251.0 1 359.5 2 468.0 3 1202.0 4 1936.0 5 1936.0 6 3540.5 7 5145.0 8 5709.0 9 6273.0 10 9700.0 11 13127.0 12 13127.0 13 24111.0 14 35095.0 15 56156.0 16 77217.0 17 75482.0 18 73747.0 19 73747.0 20 79661.5 21 85576.0 22 70237.0 23 54898.0 24 60510.0 25 66122.0 26 66122.0 27 73201.5 28 80281.0 29 84782.0 30 89283.0 31 96729.0 32 104175.0 33 104175.0 34 113950.0 35 123725.0 36 133804.0 37 143883.0 38 150073.5 39 156264.0 40 156264.0 41 163632.5 42 171001.0 43 194122.5 44 217244.0 45 268138.0 46 319032.0 47 319032.0 48 324739.0 49 330446.0 50 304987.0 51 279528.0 52 262220.0 53 244912.0 54 244912.0 55 211532.0 56 178152.0 57 147539.0 58 116926.0 59 102892.5 60 88859.0 61 88859.0 62 78249.5 63 67640.0 64 59157.0 65 50674.0 66 43045.5 67 35417.0 68 35417.0 69 30186.5 70 24956.0 71 21027.0 72 17098.0 73 13909.0 74 10720.0 75 10720.0 76 8403.5 77 6087.0 78 4862.0 79 3637.0 80 2927.5 81 2218.0 82 2218.0 83 1664.0 84 1110.0 85 873.5 86 637.0 87 522.5 88 408.0 89 408.0 90 321.5 91 235.0 92 148.5 93 62.0 94 40.0 95 18.0 96 18.0 97 11.5 98 5.0 99 4.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3284491.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.77709763698045 #Duplication Level Percentage of deduplicated Percentage of total 1 70.86216346313563 28.18691194840815 2 14.634704710476761 11.642521563140239 3 5.875399369311709 7.0111900310809565 4 2.7588027087977687 4.3894865883606 5 1.5988608109976008 3.1799021293496663 6 0.9756007992944173 2.328394094895012 7 0.6099702262742307 1.6983991672312797 8 0.43917026779413565 1.397513489704495 9 0.3038008101928382 1.0875883040310863 >10 1.6607168765179723 12.424708695591931 >50 0.1668280296233672 4.657163941284289 >100 0.10019159286243073 7.424607462905078 >500 0.006197903245511421 1.7120287305181496 >1k 0.006275377036016038 5.251895821057475 >5k 6.197903245447939E-4 1.8254038308474707 >10k+ 6.972641151128931E-4 5.782284201594258 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38124 1.1607277961790732 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33942 1.0334021314109247 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 30885 0.9403283492023573 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 21607 0.657849267968766 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13599 0.41403675638021237 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13238 0.4030457078433158 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 12899 0.3927244738986954 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 12017 0.3658709979719841 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 11323 0.3447413921974516 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8607 0.26204973616916594 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 8352 0.2542859761223276 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 8247 0.2510891337501001 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 8058 0.24533481748009053 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7179 0.21857267990687143 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 7020 0.21373174717178398 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6614 0.20137062333250416 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5157 0.15701062965311824 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4712 0.14346210721843963 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4687 0.14270095427267118 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4499 0.13697708412049234 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4481 0.13642905399953903 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4448 0.13542433211112467 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4311 0.1312532139683135 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 4059 0.12358079227496742 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3550 0.10808371829912153 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3405 0.10366903121366447 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 3.0446117830738462E-5 0.0 0.0 0.0 0.0 3 3.0446117830738462E-5 0.0 0.0 0.0 0.0 4 3.0446117830738462E-5 0.0 0.0 0.0 0.0 5 3.0446117830738462E-5 0.0 0.0 0.0 0.0 6 3.0446117830738462E-5 0.0 0.0 0.0 0.0 7 3.0446117830738462E-5 0.0 0.0 0.0 0.0 8 3.0446117830738462E-5 0.0 0.0 0.0 0.0 9 3.0446117830738462E-5 0.0 0.0 0.0 0.0 10 3.0446117830738462E-5 0.0 0.0 9.133835349221538E-5 0.0 11 3.0446117830738462E-5 0.0 0.0 1.522305891536923E-4 0.0 12 3.0446117830738462E-5 0.0 0.0 2.1312282481516923E-4 0.0 13 3.0446117830738462E-5 0.0 0.0 2.7401506047664616E-4 0.0 14 3.0446117830738462E-5 0.0 0.0 4.2624564963033846E-4 0.0 15 3.0446117830738462E-5 0.0 0.0 0.0010351680062451077 0.0 16 6.0892235661476924E-5 0.0 0.0 0.001978997658998 0.0 17 9.133835349221538E-5 0.0 0.0 0.0031359501365660616 0.0 18 9.133835349221538E-5 0.0 0.0 0.0034708574327041845 0.0 19 9.133835349221538E-5 0.0 0.0 0.004171118142811169 0.0 20 9.133835349221538E-5 0.0 0.0 0.005449855091702185 0.0 21 9.133835349221538E-5 0.0 0.0 0.007824652282499785 0.0 22 9.133835349221538E-5 0.0 0.0 0.01245246219277203 0.0 23 9.133835349221538E-5 0.0 0.0 0.020855590714055846 0.0 24 9.133835349221538E-5 0.0 0.0 0.0332471606711664 0.0 25 9.133835349221538E-5 0.0 0.0 0.038849246352022276 0.0 26 9.133835349221538E-5 0.0 0.0 0.04618676074923025 0.0 27 9.133835349221538E-5 0.0 0.0 0.09770159211883972 0.0 28 9.133835349221538E-5 0.0 0.0 0.15280906539247635 0.0 29 9.133835349221538E-5 0.0 0.0 0.2173852813114726 0.0 30 9.133835349221538E-5 0.0 0.0 0.3394437676949031 0.0 31 9.133835349221538E-5 0.0 0.0 0.5119514713238672 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9220 0.0 28.572668 1 GTATTGG 1115 0.0 22.067265 1 ATTGGAC 1250 0.0 19.684 3 AACACCG 70 1.2200727E-4 18.5 5 GTATCAA 15530 0.0 17.380232 2 TATTGGA 1525 0.0 17.226229 2 TTGGACC 2125 0.0 17.150589 4 AGCCGTC 235 0.0 16.531916 12 TGGACCC 2210 0.0 15.821266 5 GGACCCT 2225 0.0 15.797752 6 CGAATTA 225 0.0 15.622222 15 CGTCTGT 985 0.0 15.213199 34 CCGTCGT 110 1.4534227E-5 15.136364 9 GACCCTC 2340 0.0 14.942307 7 ACAACGC 360 0.0 14.902778 3 TGCGACG 175 2.242814E-9 14.799999 22 GCCGTCA 275 0.0 14.799999 13 TCGACGG 90 8.2797854E-4 14.388888 19 TACACAG 485 0.0 14.113402 5 CGACTAT 105 1.6571094E-4 14.095238 36 >>END_MODULE