##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088231_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3395819 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.81655942204222 31.0 30.0 33.0 27.0 34.0 2 30.730820164443394 31.0 31.0 34.0 27.0 34.0 3 30.755421004476386 31.0 31.0 34.0 27.0 34.0 4 34.96053411562866 35.0 35.0 37.0 32.0 37.0 5 34.88030722485504 35.0 35.0 37.0 32.0 37.0 6 34.98094892572307 35.0 35.0 37.0 32.0 37.0 7 34.597016802132266 35.0 35.0 37.0 30.0 37.0 8 34.821410092822966 35.0 35.0 37.0 32.0 37.0 9 36.227403462905414 38.0 35.0 39.0 32.0 39.0 10 36.16470076879834 38.0 35.0 39.0 32.0 39.0 11 36.256984250338434 38.0 35.0 39.0 32.0 39.0 12 36.00308555903598 38.0 35.0 39.0 30.0 39.0 13 36.163478972230266 38.0 35.0 39.0 31.0 39.0 14 37.06632980144113 39.0 36.0 40.0 31.0 41.0 15 37.115053246359714 39.0 36.0 40.0 31.0 41.0 16 37.0382617565895 39.0 36.0 40.0 31.0 41.0 17 37.14521239206212 39.0 36.0 40.0 31.0 41.0 18 37.1489902730387 39.0 36.0 40.0 31.0 41.0 19 37.233607562711676 39.0 36.0 40.0 31.0 41.0 20 37.19371644955164 39.0 36.0 40.0 31.0 41.0 21 37.1220023799855 39.0 36.0 40.0 31.0 41.0 22 37.04677339987791 39.0 36.0 40.0 31.0 41.0 23 36.92040977449034 39.0 35.0 40.0 31.0 41.0 24 36.85424252588256 39.0 35.0 40.0 31.0 41.0 25 36.776017214109466 38.0 35.0 40.0 30.0 41.0 26 36.50544772851556 38.0 35.0 40.0 30.0 41.0 27 36.36345223346709 38.0 35.0 40.0 30.0 41.0 28 36.199244718284454 38.0 35.0 40.0 30.0 41.0 29 36.03778146008371 38.0 34.0 40.0 29.0 41.0 30 35.881555230122686 38.0 34.0 40.0 29.0 41.0 31 35.62730316309556 38.0 34.0 40.0 28.0 41.0 32 35.3896706508798 38.0 34.0 40.0 27.0 41.0 33 35.50202705150068 38.0 34.0 40.0 27.0 41.0 34 35.483109376559824 38.0 34.0 40.0 27.0 41.0 35 35.3954571783714 38.0 34.0 40.0 27.0 41.0 36 35.309895492074226 38.0 34.0 40.0 27.0 41.0 37 35.1540164537627 38.0 34.0 40.0 26.0 41.0 38 35.028646697600784 38.0 33.0 40.0 25.0 41.0 39 34.98510727456322 38.0 33.0 40.0 25.0 41.0 40 34.82647514487668 38.0 33.0 40.0 24.0 41.0 41 34.66479043788848 38.0 33.0 40.0 24.0 41.0 42 34.46603337810407 38.0 33.0 40.0 23.0 41.0 43 34.13008614416729 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 4.0 15 11.0 16 32.0 17 109.0 18 283.0 19 616.0 20 1419.0 21 2788.0 22 5191.0 23 8756.0 24 14381.0 25 22844.0 26 34140.0 27 49661.0 28 69296.0 29 92542.0 30 117953.0 31 145759.0 32 176736.0 33 213991.0 34 257226.0 35 304956.0 36 370361.0 37 462234.0 38 532852.0 39 511675.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.11633688367961 25.499150573101804 13.511497520922052 21.873015022296535 2 17.78127750625107 23.109830058669203 36.24459960910755 22.864292825972175 3 19.70652735025041 26.64190877075604 32.33031560280451 21.321248276189042 4 12.86711688697189 15.935654992212484 35.477980422395895 35.71924769841973 5 11.14064088810387 40.648662369814176 34.8132512362997 13.397445505782258 6 31.629188717066487 36.07683448381672 15.388835506250482 16.905141292866315 7 24.351415667325025 35.45029932396279 21.530446705198365 18.667838303513822 8 27.639105617820032 33.6985569607803 20.26344749234279 18.398889929056878 9 24.992174200097235 13.843523462234 24.0210682607053 37.143234076963466 10 16.177422883846283 28.135097895382525 33.92406956907892 21.76340965169227 11 31.122830751580103 21.993398352503476 25.271606054386293 21.61216484153013 12 20.102690985591398 27.573524972915227 31.974554591985026 20.349229449508353 13 30.965608002075495 21.08731354645227 28.996863495963716 18.950214955508525 14 20.86400953643289 22.826599415339864 28.684184875577877 27.62520617264937 15 22.92913727145057 29.205414069477794 27.036482215335976 20.828966443735663 16 21.650241075864173 28.68998612705801 27.3811118908281 22.278660906249716 17 19.169896864349955 27.4724889636344 28.109242571526927 25.248371600488717 18 20.26948432763937 26.622532001852868 32.641610168268684 20.466373502239076 19 19.50648724210566 25.105107192108882 34.092070278186206 21.29633528759925 20 24.0907127264439 23.978103662179876 32.6298898734002 19.30129373797602 21 23.402042335000775 24.98702080411235 31.40397058853843 20.20696627234844 22 21.603212656504954 24.65643781367617 32.33697084561927 21.403378684199602 23 20.80970746674072 26.693177698811393 33.25015261414109 19.246962220306795 24 19.362574978230583 25.6687709209472 31.744595339150877 23.224058761671337 25 20.63113493387015 26.669118701556236 32.8530466435343 19.84669972103931 26 22.007503933513537 25.519793605018403 31.476471508051517 20.99623095341654 27 20.620356974267473 27.122175828570366 31.145152318188924 21.112314878973233 28 20.457745244961526 26.605275487297764 31.16049471423536 21.776484553505355 29 19.401328516036926 26.52756227584568 32.22088692006258 21.85022228805481 30 18.948713108678643 26.77354122819856 34.11739553845479 20.16035012466801 31 20.41857943547639 26.289622621229224 32.733428960730826 20.558368982563557 32 21.508596306222447 26.49472778142769 30.797695636899373 21.198980275450488 33 22.37053859466597 26.43371157296664 30.2922800066788 20.90346982568859 34 20.542879346631842 29.14675369918126 30.401914825260125 19.908452128926776 35 19.128493008608526 30.334361165892528 30.544178002420036 19.99296782307891 36 20.32263792622634 26.63946458866035 32.6514163446285 20.386481140484815 37 20.357828258808848 27.062661466939197 31.62812858989245 20.9513816843595 38 20.6830811653978 26.699302878039145 32.16799835326912 20.44961760329393 39 21.681720963337565 25.973263003711327 32.072734147491374 20.272281885459737 40 19.753437977701402 26.91268291979048 31.21732930995439 22.116549792553723 41 21.019377063382944 26.380351838540278 31.033397245259536 21.566873852817245 42 18.40737094644915 28.069900074179454 31.515755109444882 22.00697386992652 43 19.097602080676268 27.838615662377762 31.10819510698303 21.95558714996294 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 364.0 1 457.0 2 550.0 3 1416.0 4 2282.0 5 2282.0 6 3922.5 7 5563.0 8 6327.0 9 7091.0 10 10814.5 11 14538.0 12 14538.0 13 26806.5 14 39075.0 15 63775.5 16 88476.0 17 85860.5 18 83245.0 19 83245.0 20 90233.5 21 97222.0 22 80327.5 23 63433.0 24 69230.5 25 75028.0 26 75028.0 27 81867.5 28 88707.0 29 94094.5 30 99482.0 31 106815.0 32 114148.0 33 114148.0 34 123195.5 35 132243.0 36 142937.0 37 153631.0 38 158200.5 39 162770.0 40 162770.0 41 169326.5 42 175883.0 43 199142.5 44 222402.0 45 277737.5 46 333073.0 47 333073.0 48 337327.0 49 341581.0 50 311966.5 51 282352.0 52 263410.5 53 244469.0 54 244469.0 55 211104.0 56 177739.0 57 145342.5 58 112946.0 59 98413.0 60 83880.0 61 83880.0 62 73108.5 63 62337.0 64 53361.0 65 44385.0 66 38082.0 67 31779.0 68 31779.0 69 26700.5 70 21622.0 71 17844.5 72 14067.0 73 11243.0 74 8419.0 75 8419.0 76 6747.5 77 5076.0 78 3970.5 79 2865.0 80 2227.0 81 1589.0 82 1589.0 83 1174.0 84 759.0 85 581.0 86 403.0 87 309.0 88 215.0 89 215.0 90 157.5 91 100.0 92 60.0 93 20.0 94 13.5 95 7.0 96 7.0 97 4.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3395819.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.93456556765586 #Duplication Level Percentage of deduplicated Percentage of total 1 69.40464637991161 27.022397551786376 2 14.711956205239538 11.456072470027607 3 6.194467359526931 7.235366866986161 4 3.1881828311763503 4.965220539284412 5 1.8191413489518569 3.54137390638 6 1.1118716391479366 2.5974143542333405 7 0.7419314141209323 2.022074410285655 8 0.49159115750858645 1.531191052359832 9 0.3642538788234277 1.2763859875491346 >10 1.7288288387693271 12.044823706496384 >50 0.13984015517493914 3.745180277261477 >100 0.08721460442769749 6.36068441954571 >500 0.007730918615838023 2.0669756504208396 >1k 0.006812393631541331 5.609894162800514 >5k 8.419812353590409E-4 2.4025160983022977 >10k+ 6.888937380210335E-4 6.122428546280256 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 42973 1.2654679180486357 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 38812 1.142934885516572 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 34486 1.0155429367701871 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 23201 0.6832225156876736 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14705 0.4330325026157165 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13974 0.4115060313874208 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 13338 0.3927771179794919 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 11999 0.3533462767008489 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 11949 0.3518738778480243 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 9634 0.28370181096224506 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 9311 0.27419011437299806 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 8859 0.26087962874346365 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 8799 0.2591127501200741 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 7541 0.22206719498300706 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 7445 0.2192401891855838 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7183 0.21152481919678284 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 6039 0.1778363334441559 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5341 0.1572816454587244 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 5316 0.1565454460323121 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5148 0.15159818588682142 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4878 0.14364723208156854 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4792 0.14111470605471021 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4322 0.1272741568381589 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4294 0.12644961348057715 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 4051 0.11929375505584955 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3613 0.106395541105106 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3524 0.10377467114707822 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 3500 0.10306791969772242 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 3443 0.10138938500550236 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 2.9447977056492117E-5 0.0 5 0.0 0.0 0.0 2.9447977056492117E-5 0.0 6 0.0 0.0 0.0 2.9447977056492117E-5 0.0 7 0.0 0.0 0.0 2.9447977056492117E-5 0.0 8 0.0 0.0 0.0 5.8895954112984235E-5 0.0 9 0.0 0.0 0.0 1.4723988528246058E-4 0.0 10 0.0 0.0 0.0 2.3558381645193694E-4 0.0 11 0.0 0.0 0.0 2.6503179350842904E-4 0.0 12 0.0 0.0 0.0 2.9447977056492117E-4 0.0 13 0.0 0.0 0.0 4.122716787908896E-4 0.0 14 0.0 0.0 0.0 4.4171965584738175E-4 0.0 15 0.0 0.0 0.0 6.184075181863344E-4 0.0 16 0.0 0.0 0.0 0.0012662630134291609 0.0 17 0.0 0.0 0.0 0.0018846705316154955 0.0 18 0.0 0.0 0.0 0.002326390187462877 0.0 19 0.0 0.0 0.0 0.0028859017515362275 0.0 20 0.0 0.0 0.0 0.0038871329714569593 0.0 21 0.0 0.0 0.0 0.005418427778394549 0.0 22 0.0 0.0 0.0 0.008304329529930777 0.0 23 0.0 0.0 0.0 0.013752205285381819 0.0 24 0.0 0.0 0.0 0.022616046379385944 0.0 25 0.0 0.0 0.0 0.027357170685481175 0.0 26 0.0 0.0 0.0 0.03486640483488666 0.0 27 0.0 0.0 0.0 0.08660650052314331 0.0 28 0.0 0.0 0.0 0.14146808177938813 0.0 29 0.0 0.0 0.0 0.2057824636707669 0.0 30 0.0 0.0 0.0 0.33114250200025386 0.0 31 0.0 0.0 0.0 0.49549166195253636 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9740 0.0 29.42146 1 ATTGGAC 1315 0.0 23.494297 3 GTATTGG 1240 0.0 23.125 1 TATTGGA 1450 0.0 21.306896 2 TTGGACC 2215 0.0 18.62528 4 TAGTACG 110 3.8582584E-8 18.5 4 GGACCCT 2255 0.0 17.966742 6 TGGACCC 2340 0.0 17.94658 5 AGTATCA 600 0.0 17.575 1 GTATCAA 17055 0.0 17.45324 2 GTTCGCT 125 1.6604099E-7 16.279999 37 CGTCTGT 1005 0.0 16.014927 34 GACCCTC 2440 0.0 15.770493 7 ACGCATA 145 5.3552867E-8 15.310345 7 CGATCTG 315 0.0 15.269841 33 TAGACCG 85 5.3679856E-4 15.235294 5 CGAACGA 75 0.004106603 14.8 16 CGCATAG 180 3.3378456E-9 14.388888 8 TATACTG 580 0.0 14.353448 5 ACCCTCG 2805 0.0 13.652407 8 >>END_MODULE