##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088230_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2211493 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.81037516284248 31.0 30.0 31.0 27.0 34.0 2 30.595380134596855 31.0 30.0 34.0 27.0 34.0 3 30.61498725069444 31.0 30.0 34.0 27.0 34.0 4 34.769940940351155 35.0 35.0 37.0 32.0 37.0 5 34.638899150935586 35.0 35.0 37.0 32.0 37.0 6 34.757740133023255 35.0 35.0 37.0 32.0 37.0 7 34.38660443419898 35.0 35.0 37.0 30.0 37.0 8 34.61076792917726 35.0 35.0 37.0 30.0 37.0 9 35.98281658589921 37.0 35.0 39.0 30.0 39.0 10 35.876008198985936 37.0 35.0 39.0 30.0 39.0 11 35.98977206801016 37.0 35.0 39.0 30.0 39.0 12 35.71540176704154 37.0 35.0 39.0 30.0 39.0 13 35.88864174564423 37.0 35.0 39.0 30.0 39.0 14 36.73405251565345 38.0 36.0 40.0 31.0 41.0 15 36.779750602873264 38.0 36.0 40.0 31.0 41.0 16 36.679741694864056 38.0 36.0 40.0 30.0 41.0 17 36.791117132181746 38.0 36.0 40.0 31.0 41.0 18 36.78670563280101 38.0 36.0 40.0 31.0 41.0 19 36.88326347856403 39.0 36.0 40.0 31.0 41.0 20 36.8411462301712 39.0 36.0 40.0 31.0 41.0 21 36.77640761241388 39.0 35.0 40.0 30.0 41.0 22 36.69205690454367 38.0 35.0 40.0 30.0 41.0 23 36.54321718404716 38.0 35.0 40.0 30.0 41.0 24 36.47442700474295 38.0 35.0 40.0 30.0 41.0 25 36.37753273467291 38.0 35.0 40.0 30.0 41.0 26 36.083127100108385 38.0 34.0 40.0 29.0 41.0 27 35.92241078764437 38.0 34.0 40.0 29.0 41.0 28 35.73913505491539 38.0 34.0 40.0 28.0 41.0 29 35.54718283078445 38.0 34.0 40.0 27.0 41.0 30 35.36984335921479 38.0 34.0 40.0 27.0 41.0 31 35.08567650903711 37.0 33.0 40.0 27.0 41.0 32 34.88577987811854 37.0 33.0 40.0 26.0 41.0 33 34.995443349809385 37.0 33.0 40.0 26.0 41.0 34 34.97061261328885 37.0 33.0 40.0 26.0 41.0 35 34.85148087739821 37.0 33.0 40.0 25.0 41.0 36 34.75403946564606 37.0 33.0 40.0 25.0 41.0 37 34.58025551064372 37.0 33.0 40.0 24.0 41.0 38 34.43304229314766 37.0 33.0 40.0 24.0 41.0 39 34.37013953921627 37.0 33.0 40.0 24.0 41.0 40 34.18538290647992 37.0 33.0 40.0 23.0 41.0 41 34.00467557437442 37.0 33.0 40.0 22.0 41.0 42 33.77609560600011 37.0 33.0 40.0 21.0 41.0 43 33.426098567800125 37.0 32.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 2.0 14 6.0 15 14.0 16 41.0 17 120.0 18 253.0 19 674.0 20 1263.0 21 2521.0 22 4603.0 23 7756.0 24 12687.0 25 18724.0 26 28126.0 27 39252.0 28 52983.0 29 68953.0 30 86663.0 31 104522.0 32 124752.0 33 148709.0 34 174414.0 35 205030.0 36 245983.0 37 300047.0 38 339324.0 39 244070.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.026711818667295 25.860448122603145 13.94786237170997 21.164977687019583 2 18.777947748421543 23.97190495289834 34.80693811827575 22.44320918040437 3 20.988942764006037 26.60121465453429 32.231980838284365 20.177861743175313 4 13.859098807909408 16.62343041556089 34.73942716526799 34.77804361126171 5 11.041771328238434 41.39194652662251 34.309536589082576 13.256745556056474 6 31.7741905581433 36.084762646773015 14.916574458974097 17.224472336109585 7 23.95901773146015 35.87748186406197 21.386547459114723 18.776952945363153 8 28.0181307379223 33.72943075108083 20.038589315001225 18.213849195995646 9 24.954589501300706 13.572685963735811 24.09521531381741 37.37750922114608 10 16.43021253062976 28.34003996395196 33.64812821021816 21.58161929520012 11 31.374370165313657 21.470879627473387 25.242675423345222 21.91207478386773 12 20.002233785049288 27.726246476927578 31.872902152527725 20.39861758549541 13 31.363562986633912 20.679965977735403 29.41591947159679 18.54055156403389 14 20.819193187588656 22.683182809079657 28.96658501745201 27.531038985879675 15 23.213458057520416 28.907394235478023 27.26461263951548 20.614535067486084 16 21.541465426297982 28.23653522755894 27.869091152447687 22.352908193695388 17 19.092983789684165 27.076775734763796 28.59923137898243 25.2310090965696 18 20.210916335706237 25.897527145688453 33.21073139277402 20.68082512583128 19 19.432256850914744 24.421555935288968 34.80228063122967 21.343906582566618 20 24.119994953635395 23.35001738644436 33.47150544903375 19.058482210886492 21 23.465007576329654 24.096481426800807 32.207065543503866 20.23144545336567 22 21.763532599922314 23.900460005977862 32.988799874112196 21.34720751998763 23 20.769814781236022 26.20605174875073 33.9632999064433 19.06083356356995 24 19.442204881498608 24.96865239908062 32.378669071075514 23.21047364834526 25 20.556474743532988 26.145459198830835 33.52698832869921 19.771077728936966 26 21.95765485127016 24.954906029546557 32.18820950371536 20.89922961546792 27 20.77994368510323 26.472387658473256 31.733132322824442 21.014536333599064 28 20.441077588760173 26.081746584773274 31.860693205902074 21.61648262056448 29 19.527079669707298 25.80175474215835 32.8444629940045 21.82670259412985 30 18.855135422088154 26.180729489082715 34.77781751965753 20.186317569171596 31 20.36506559143529 25.47396713442005 33.57464843886008 20.58631883528458 32 21.453154045705773 25.965264190300395 31.271724577016524 21.309857186977304 33 22.43298983989549 25.876726718104017 30.701702424561145 20.98858101743935 34 20.702032518303245 28.8056530135976 30.894694217888098 19.597620250211058 35 19.246771298846525 29.849608386732402 31.017416740636307 19.88620357378477 36 20.384961652603014 25.981226257555416 33.24921218380524 20.38459990603633 37 20.356157582230647 26.49648902347871 32.28940810574576 20.857945288544887 38 20.80291459208779 25.990315140043403 32.65201382052758 20.55475644734123 39 21.92984558395618 25.45827637709005 32.456806329479676 20.155071709474097 40 20.06210284183581 26.390497279439728 31.438715835862922 22.108684042861544 41 21.102938150832944 25.893683588417417 31.31870641236486 21.684671848384777 42 18.469016180471744 27.706757380647375 31.63451116508169 22.189715273799195 43 19.265491683672522 27.473747373380785 31.1706164116278 22.090144531318888 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 264.0 1 301.5 2 339.0 3 821.5 4 1304.0 5 1304.0 6 2518.0 7 3732.0 8 4226.5 9 4721.0 10 7395.0 11 10069.0 12 10069.0 13 19137.0 14 28205.0 15 46669.0 16 65133.0 17 61945.5 18 58758.0 19 58758.0 20 63995.5 21 69233.0 22 55333.5 23 41434.0 24 44436.5 25 47439.0 26 47439.0 27 51746.5 28 56054.0 29 58176.0 30 60298.0 31 64219.0 32 68140.0 33 68140.0 34 72846.5 35 77553.0 36 84369.5 37 91186.0 38 94723.5 39 98261.0 40 98261.0 41 103811.0 42 109361.0 43 126001.5 44 142642.0 45 182143.5 46 221645.0 47 221645.0 48 226276.5 49 230908.0 50 209177.5 51 187447.0 52 174230.5 53 161014.0 54 161014.0 55 137902.5 56 114791.0 57 93731.5 58 72672.0 59 63327.0 60 53982.0 61 53982.0 62 47843.0 63 41704.0 64 36302.0 65 30900.0 66 26640.5 67 22381.0 68 22381.0 69 19058.0 70 15735.0 71 13042.0 72 10349.0 73 8194.0 74 6039.0 75 6039.0 76 4729.5 77 3420.0 78 2677.5 79 1935.0 80 1585.5 81 1236.0 82 1236.0 83 888.0 84 540.0 85 420.0 86 300.0 87 250.5 88 201.0 89 201.0 90 157.5 91 114.0 92 75.0 93 36.0 94 24.0 95 12.0 96 12.0 97 8.5 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2211493.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.04340384746987 #Duplication Level Percentage of deduplicated Percentage of total 1 74.882640805987 31.483211085711382 2 13.220805625514187 11.116953402047889 3 4.871303788423161 6.144185773211544 4 2.2298834145518147 3.7500755572310807 5 1.2025746827578394 2.52801665219654 6 0.7375775137413112 1.8606161567423223 7 0.4857147149805216 1.4294769941609353 8 0.34304231190246126 1.1538133164867919 9 0.2577163678858676 0.9751745999815782 >10 1.518346779503494 12.182591114901033 >50 0.14981235582445598 4.39401042361903 >100 0.08512577739094224 6.79314803727495 >500 0.006857178005845869 2.0336527283481525 >1k 0.007074866196507643 5.863866493199907 >5k 9.795968579779813E-4 3.1071321545765715 >10k+ 5.44220476654434E-4 5.184075510310353 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 32527 1.4708163218242154 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 29581 1.3376031486421165 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 24625 1.1135011505801737 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 15425 0.6974925988913372 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11126 0.5030990376184776 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 9716 0.4393412052400799 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9293 0.42021385552656054 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8987 0.4063770493508232 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8924 0.40352829513817134 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7083 0.32028136647956834 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6649 0.30065661523685583 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6114 0.27646481358973324 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6093 0.27551522885218266 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5039 0.22785511869130945 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4835 0.21863058124081786 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4557 0.2060598880484813 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4117 0.1861638268807543 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3855 0.1743166268217896 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3595 0.1625598634044964 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3528 0.15953023590850163 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3379 0.1527927061039759 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3237 0.1463717045453004 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3133 0.1416689991783831 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2937 0.13280620829457745 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2802 0.12670173498175213 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2739 0.12385298076910034 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2692 0.12172771968982041 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2524 0.11413104178941556 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2456 0.11105619597258504 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2331 0.10540390586811715 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2308 0.10436388448889507 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.521832083574309E-5 0.0 3 0.0 0.0 0.0 4.521832083574309E-5 0.0 4 0.0 0.0 0.0 4.521832083574309E-5 0.0 5 0.0 0.0 0.0 9.043664167148618E-5 0.0 6 0.0 0.0 0.0 1.3565496250722927E-4 0.0 7 0.0 0.0 0.0 1.3565496250722927E-4 0.0 8 4.521832083574309E-5 0.0 0.0 1.3565496250722927E-4 0.0 9 4.521832083574309E-5 0.0 0.0 1.3565496250722927E-4 0.0 10 4.521832083574309E-5 0.0 0.0 1.3565496250722927E-4 0.0 11 4.521832083574309E-5 0.0 0.0 3.1652824585020164E-4 0.0 12 4.521832083574309E-5 0.0 0.0 4.97401529193174E-4 0.0 13 4.521832083574309E-5 0.0 0.0 4.97401529193174E-4 0.0 14 9.043664167148618E-5 0.0 0.0 8.139297750433756E-4 0.0 15 9.043664167148618E-5 0.0 0.0 0.0010852397000578342 0.0 16 9.043664167148618E-5 0.0 0.0 0.0016278595500867513 0.0 17 9.043664167148618E-5 0.0 0.0 0.002532225966801613 0.0 18 9.043664167148618E-5 0.0 0.0 0.002893972533487558 0.0 19 9.043664167148618E-5 0.0 0.0 0.003436592383516475 0.0 20 9.043664167148618E-5 0.0 0.0 0.00438617712106708 0.0 21 9.043664167148618E-5 0.0 0.0 0.006421001558675519 0.0 22 9.043664167148618E-5 0.0 0.0 0.0108071786797426 0.0 23 9.043664167148618E-5 0.0 0.0 0.01853951154265467 0.0 24 9.043664167148618E-5 0.0 0.0 0.030477148243290845 0.0 25 9.043664167148618E-5 0.0 0.0 0.036717276518623394 0.0 26 9.043664167148618E-5 0.0 0.0 0.044223517777356745 0.0 27 9.043664167148618E-5 0.0 0.0 0.09658633330514725 0.0 28 9.043664167148618E-5 0.0 0.0 0.14949176868296665 0.0 29 9.043664167148618E-5 0.0 0.0 0.20949648043199776 0.0 30 9.043664167148618E-5 0.0 0.0 0.3329424963135764 0.0 31 9.043664167148618E-5 0.0 0.0 0.48392646958412255 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7405 0.0 29.979744 1 GTATTGG 720 0.0 23.381945 1 ATTGGAC 735 0.0 22.14966 3 TTGGACC 1265 0.0 19.158102 4 GTATCAA 12240 0.0 18.666258 2 GGACCCT 1325 0.0 18.43019 6 CGTCTGT 585 0.0 18.34188 34 TATTGGA 965 0.0 18.212435 2 TGGACCC 1390 0.0 17.967627 5 ACCCGTT 105 4.802223E-7 17.619047 30 GACCCTC 1410 0.0 17.187943 7 AGTATCA 370 0.0 17.0 1 GGTCGGT 155 4.0199666E-10 16.709679 23 AGTGCGC 90 4.4489476E-5 16.444445 10 CGGTATA 135 2.2222594E-8 16.444443 26 TTTTTAC 1650 0.0 15.136362 1 TATACTG 235 0.0 14.957447 5 GACCGTC 150 8.1114194E-8 14.8 22 ACCCGTG 75 0.004106001 14.8 7 TGCGTCT 740 0.0 14.5 32 >>END_MODULE