##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088229_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3199476 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.942593724722425 31.0 30.0 33.0 27.0 34.0 2 30.80369347980732 31.0 31.0 34.0 27.0 34.0 3 30.822252768890905 31.0 31.0 34.0 27.0 34.0 4 35.00434914967326 35.0 35.0 37.0 32.0 37.0 5 34.89694843780669 35.0 35.0 37.0 32.0 37.0 6 34.98929387187152 35.0 35.0 37.0 32.0 37.0 7 34.6143827926823 35.0 35.0 37.0 30.0 37.0 8 34.825377655591105 35.0 35.0 37.0 32.0 37.0 9 36.26950319364796 38.0 35.0 39.0 32.0 39.0 10 36.183674764242646 38.0 35.0 39.0 32.0 39.0 11 36.2649593245894 38.0 35.0 39.0 32.0 39.0 12 36.00868454709459 38.0 35.0 39.0 30.0 39.0 13 36.173482157703326 38.0 35.0 39.0 32.0 39.0 14 37.11026055516591 39.0 36.0 40.0 31.0 41.0 15 37.156705348000735 39.0 36.0 40.0 31.0 41.0 16 37.082293475556625 39.0 36.0 40.0 31.0 41.0 17 37.14553976963728 39.0 36.0 40.0 31.0 41.0 18 37.13528340265719 39.0 36.0 40.0 31.0 41.0 19 37.21106956264088 39.0 36.0 40.0 31.0 41.0 20 37.16806252023769 39.0 36.0 40.0 31.0 41.0 21 37.0971756000045 39.0 36.0 40.0 31.0 41.0 22 37.01844302004453 39.0 36.0 40.0 31.0 41.0 23 36.896536182799935 39.0 35.0 40.0 31.0 41.0 24 36.82683226878402 39.0 35.0 40.0 30.0 41.0 25 36.73951765851658 38.0 35.0 40.0 30.0 41.0 26 36.49345299042718 38.0 35.0 40.0 30.0 41.0 27 36.352139850400505 38.0 35.0 40.0 30.0 41.0 28 36.206390671472455 38.0 35.0 40.0 30.0 41.0 29 36.051645957025464 38.0 34.0 40.0 29.0 41.0 30 35.89799985997707 38.0 34.0 40.0 29.0 41.0 31 35.677563451015104 38.0 34.0 40.0 28.0 41.0 32 35.438624324733176 38.0 34.0 40.0 27.0 41.0 33 35.61087503078629 38.0 34.0 40.0 28.0 41.0 34 35.62312359898934 38.0 34.0 40.0 28.0 41.0 35 35.55839893782607 38.0 34.0 40.0 27.0 41.0 36 35.492911339231796 38.0 34.0 40.0 27.0 41.0 37 35.34695618907596 38.0 34.0 40.0 27.0 41.0 38 35.241701141061846 38.0 34.0 40.0 26.0 41.0 39 35.24315762956184 38.0 34.0 40.0 26.0 41.0 40 35.12572089929726 38.0 34.0 40.0 25.0 41.0 41 34.99465193675464 38.0 33.0 40.0 25.0 41.0 42 34.83259102428023 38.0 33.0 40.0 24.0 41.0 43 34.50840012552055 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 2.0 14 6.0 15 13.0 16 34.0 17 107.0 18 251.0 19 551.0 20 1200.0 21 2421.0 22 4499.0 23 7784.0 24 12900.0 25 20227.0 26 30731.0 27 44689.0 28 62069.0 29 84792.0 30 108590.0 31 134422.0 32 163873.0 33 199816.0 34 239303.0 35 286788.0 36 349237.0 37 433572.0 38 516957.0 39 494641.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.54063102833089 24.756491375462733 12.982032057749457 22.72084553845692 2 18.132719232774367 22.81448587206155 35.65486973491909 23.397925160244988 3 19.471375937809814 26.653333233316957 31.625209878117545 22.250080950755684 4 13.271985787672733 16.17321086327886 36.00398940326478 34.550813945783624 5 11.604525241008215 40.020709641203744 35.161507696885366 13.213257420902671 6 31.763107458846385 36.71041758087887 15.668565727637901 15.857909232636844 7 25.017940437746685 34.48402175856297 22.12415408023064 18.373883723459716 8 27.170011589397763 34.054420161301415 20.34942596850234 18.42614228079848 9 25.402347134343252 13.76994232805622 23.024395244721322 37.803315292879205 10 16.08060194856908 27.65943548256027 34.28073847092462 21.979224097946037 11 32.186020460850465 22.061550078825405 24.626126278178052 21.126303182146074 12 19.98742919153011 27.24196087109264 31.768170787966532 21.002439149410716 13 30.24945334798573 21.092922716094762 28.208275355089395 20.44934858083011 14 20.872980450548777 22.505685305968854 28.06650213972538 28.55483210375699 15 23.17463859707027 29.16165022022356 26.110119282032436 21.553591900673734 16 22.156596892741188 28.367113864895376 26.776134592039448 22.700154650323988 17 19.97020762149802 27.355792010941794 27.818836584490708 24.85516378306948 18 20.967996009346532 26.72712656697534 31.140599273130974 21.16427815054715 19 20.525923619992774 25.509927250587282 32.17136181049647 21.792787318923473 20 23.922729847012448 24.709702463778445 31.096842107895167 20.27072558131394 21 23.388673645309417 25.42472579884956 30.17125304268574 21.01534751315528 22 22.212418533534866 25.105423513100273 30.87940025179123 21.802757701573633 23 21.42213287425816 26.514247958103137 31.694846281078526 20.368772886560173 24 20.385650650293986 26.02732447438268 30.394008268854023 23.19301660646931 25 21.342651109119117 26.65380206008734 31.286529419192394 20.717017411601148 26 22.323936794650123 26.02260495156082 30.167252387578465 21.486205866210593 27 21.33464979890457 27.09131120220936 29.79625413661487 21.777784862271197 28 21.18818831583672 26.594542356310846 30.11605650425257 22.101212823599862 29 20.512765215304004 26.50052696128991 30.86492913214539 22.121778691260694 30 19.947203854631194 26.77622835739352 32.29097514718035 20.98559264079493 31 21.09829859639516 26.241171991913674 31.475122801358722 21.185406610332443 32 21.73302753325857 26.469146822792233 29.81066274602466 21.987162897924538 33 22.37306984018633 26.401573257620935 29.62897674494198 21.59638015725075 34 21.31742822887248 28.30369723042148 29.575874299416526 20.80300024128951 35 20.306731477279406 29.096202003078 29.746746029662358 20.850320489980234 36 21.101330342843642 26.416325673329005 31.217611883945995 21.264732099881357 37 21.15652688127681 26.40957456783548 30.615169484003008 21.8187290668847 38 21.28145358802504 26.185631647182227 31.055585352101406 21.47732941269133 39 21.863986477785737 25.748528821594537 31.149350706178137 21.23813399444159 40 20.517859799542176 26.337500265668503 30.673897850773063 22.47074208401626 41 21.265794773894225 25.903835503063625 30.515184361439186 22.315185361602964 42 19.45928020713392 27.282842565470094 30.829892144838716 22.42798508255727 43 19.980646830918563 26.870681324066815 30.580101241578305 22.568570603436314 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 213.0 1 358.0 2 503.0 3 1270.5 4 2038.0 5 2038.0 6 3408.0 7 4778.0 8 5160.5 9 5543.0 10 8581.5 11 11620.0 12 11620.0 13 20852.5 14 30085.0 15 47102.0 16 64119.0 17 63241.0 18 62363.0 19 62363.0 20 68462.0 21 74561.0 22 63150.0 23 51739.0 24 58102.0 25 64465.0 26 64465.0 27 71929.5 28 79394.0 29 85685.0 30 91976.0 31 100346.0 32 108716.0 33 108716.0 34 118938.5 35 129161.0 36 141779.0 37 154397.0 38 161584.5 39 168772.0 40 168772.0 41 176504.5 42 184237.0 43 202042.0 44 219847.0 45 257261.5 46 294676.0 47 294676.0 48 299359.0 49 304042.0 50 279562.0 51 255082.0 52 239337.0 53 223592.0 54 223592.0 55 197288.5 56 170985.0 57 145534.5 58 120084.0 59 106464.5 60 92845.0 61 92845.0 62 82220.0 63 71595.0 64 62439.5 65 53284.0 66 45137.5 67 36991.0 68 36991.0 69 31654.0 70 26317.0 71 21974.0 72 17631.0 73 14017.0 74 10403.0 75 10403.0 76 7985.5 77 5568.0 78 4485.5 79 3403.0 80 2732.5 81 2062.0 82 2062.0 83 1539.0 84 1016.0 85 802.0 86 588.0 87 497.0 88 406.0 89 406.0 90 347.5 91 289.0 92 173.5 93 58.0 94 40.5 95 23.0 96 23.0 97 14.0 98 5.0 99 4.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3199476.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.578127399281755 #Duplication Level Percentage of deduplicated Percentage of total 1 72.7013475633139 31.681885862135555 2 14.333431987604364 12.492482504495268 3 5.339367883017964 6.9803896151337055 4 2.595293574276039 4.523921360733542 5 1.3451545408924113 2.930965797736593 6 0.8264336171654115 2.160865767353013 7 0.5397153228762291 1.6463848169751358 8 0.3545993271941503 1.2362219724933023 9 0.27140699137641017 1.064466760253127 >10 1.43169578641317 11.827639796324469 >50 0.153989704821848 4.703344863526166 >100 0.0968276712606329 7.825727082875759 >500 0.005077851926560519 1.534947264968632 >1k 0.0047151482174182255 4.0484407978323835 >5k 5.803259344514739E-4 1.8635845449164474 >10k+ 3.6270370903217116E-4 3.4787311922467508 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 30467 0.9522496808852451 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 27526 0.860328378772024 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 25274 0.7899418529784253 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 15698 0.49064284276550285 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11080 0.34630670772338973 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8706 0.2721070575306706 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8694 0.2717319961143637 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8647 0.27026300556716165 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8318 0.2599800717367469 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6576 0.20553365613619232 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6141 0.19193767979506646 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5975 0.18674933020282072 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5895 0.18424892076077456 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4898 0.15308756808927462 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4770 0.1490869129820008 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4622 0.14446115551421546 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3932 0.12289512407656755 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3685 0.1151751099242501 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3429 0.10717379970970246 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3292 0.10289184854019846 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3280 0.10251678712389155 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.125511802557669E-5 0.0 0.0 0.0 0.0 7 3.125511802557669E-5 0.0 0.0 0.0 0.0 8 3.125511802557669E-5 0.0 0.0 0.0 0.0 9 3.125511802557669E-5 0.0 0.0 3.125511802557669E-5 0.0 10 3.125511802557669E-5 0.0 0.0 9.376535407673006E-5 0.0 11 3.125511802557669E-5 0.0 0.0 1.2502047210230676E-4 0.0 12 3.125511802557669E-5 0.0 0.0 2.812960622301902E-4 0.0 13 3.125511802557669E-5 0.0 0.0 2.812960622301902E-4 0.0 14 6.251023605115338E-5 0.0 0.0 4.688267703836503E-4 0.0 15 6.251023605115338E-5 0.0 0.0 7.188677145882639E-4 0.0 16 6.251023605115338E-5 0.0 0.0 0.0015627559012788344 0.0 17 9.376535407673006E-5 0.0 0.0 0.0025316645600717115 0.0 18 9.376535407673006E-5 0.0 0.0 0.0028754708583530555 0.0 19 1.8753070815346012E-4 0.0 0.0 0.0037193590450436257 0.0 20 1.8753070815346012E-4 0.0 0.0 0.00462575746778535 0.0 21 1.8753070815346012E-4 0.0 0.0 0.006251023605115338 0.0 22 1.8753070815346012E-4 0.0 0.0 0.010720505482772804 0.0 23 1.8753070815346012E-4 0.0 0.0 0.018378009399039094 0.0 24 1.8753070815346012E-4 0.0 0.0 0.028942239291684012 0.0 25 1.8753070815346012E-4 0.0 0.0 0.03409933376590417 0.0 26 1.8753070815346012E-4 0.0 0.0 0.04103796996758219 0.0 27 1.8753070815346012E-4 0.0 0.0 0.09798479501018292 0.0 28 1.8753070815346012E-4 0.0 0.0 0.1523061901386352 0.0 29 1.8753070815346012E-4 0.0 0.0 0.2154415285503001 0.0 30 1.8753070815346012E-4 0.0 0.0 0.33149178177926636 0.0 31 1.8753070815346012E-4 0.0 0.0 0.5085520253941583 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7685 0.0 28.839296 1 GTATTGG 1110 0.0 20.166666 1 CGAACGA 120 5.18412E-9 18.5 16 GTATCAA 13340 0.0 17.265741 2 ATTGGAC 1410 0.0 16.40071 3 TATTGGA 1470 0.0 15.982994 2 CGTCTGT 855 0.0 15.578947 34 TGGACCC 1985 0.0 14.725441 5 CGTATAC 115 2.2121705E-5 14.478261 3 TCTATAC 295 0.0 14.423729 3 TTGGACC 2110 0.0 14.379148 4 GGACCCT 1950 0.0 14.135898 6 TATACTG 465 0.0 13.924731 5 TGCGTCT 975 0.0 13.661538 32 CGGTATA 285 0.0 13.631579 26 TCTAGAC 245 7.2759576E-12 13.591836 3 GACCCTC 2135 0.0 13.084309 7 AGCCGTC 285 0.0 12.982457 12 ATAGTAC 500 0.0 12.95 3 TAATACT 675 0.0 12.881481 4 >>END_MODULE