##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088228_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2313914 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.05983411656613 31.0 30.0 33.0 27.0 34.0 2 30.855524881218575 31.0 31.0 34.0 27.0 34.0 3 30.81466683722904 31.0 31.0 34.0 27.0 34.0 4 34.99253386253768 35.0 35.0 37.0 32.0 37.0 5 34.913126849139594 35.0 35.0 37.0 32.0 37.0 6 35.01717738861513 36.0 35.0 37.0 32.0 37.0 7 34.62532574676501 35.0 35.0 37.0 30.0 37.0 8 34.85637754903596 35.0 35.0 37.0 32.0 37.0 9 36.25887003579217 38.0 35.0 39.0 32.0 39.0 10 36.20653533363816 38.0 35.0 39.0 32.0 39.0 11 36.3007894848296 38.0 35.0 39.0 32.0 39.0 12 36.039058063523534 38.0 35.0 39.0 30.0 39.0 13 36.203043846919115 38.0 35.0 39.0 32.0 39.0 14 37.110903862459885 39.0 36.0 40.0 31.0 41.0 15 37.15124589764356 39.0 36.0 40.0 31.0 41.0 16 37.06794677762441 39.0 36.0 40.0 31.0 41.0 17 37.17616514701929 39.0 36.0 40.0 31.0 41.0 18 37.17250122519679 39.0 36.0 40.0 31.0 41.0 19 37.25898672120053 39.0 36.0 40.0 31.0 41.0 20 37.215872327147856 39.0 36.0 40.0 31.0 41.0 21 37.14760401639819 39.0 36.0 40.0 31.0 41.0 22 37.068155947023094 39.0 36.0 40.0 31.0 41.0 23 36.9270029050345 39.0 35.0 40.0 31.0 41.0 24 36.853258159119136 39.0 35.0 40.0 31.0 41.0 25 36.77399376122017 38.0 35.0 40.0 30.0 41.0 26 36.50873887274981 38.0 35.0 40.0 30.0 41.0 27 36.3642447385685 38.0 35.0 40.0 30.0 41.0 28 36.20152045408775 38.0 35.0 40.0 30.0 41.0 29 36.02745478008258 38.0 35.0 40.0 29.0 41.0 30 35.86093735549377 38.0 34.0 40.0 29.0 41.0 31 35.5972737102589 38.0 34.0 40.0 28.0 41.0 32 35.361130966838004 38.0 34.0 40.0 27.0 41.0 33 35.47531628228188 38.0 34.0 40.0 27.0 41.0 34 35.44714064567655 38.0 34.0 40.0 27.0 41.0 35 35.3432495762591 38.0 34.0 40.0 27.0 41.0 36 35.25624288543135 38.0 34.0 40.0 26.0 41.0 37 35.09625336118801 38.0 33.0 40.0 25.0 41.0 38 34.96624809737959 38.0 33.0 40.0 25.0 41.0 39 34.91245309894836 38.0 33.0 40.0 25.0 41.0 40 34.74434313461953 38.0 33.0 40.0 24.0 41.0 41 34.571478455984106 38.0 33.0 40.0 23.0 41.0 42 34.35730325327562 38.0 33.0 40.0 23.0 41.0 43 34.01809920334118 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 4.0 15 9.0 16 23.0 17 70.0 18 207.0 19 417.0 20 978.0 21 1880.0 22 3449.0 23 6006.0 24 9650.0 25 15469.0 26 23363.0 27 33442.0 28 47100.0 29 62524.0 30 80535.0 31 98708.0 32 120158.0 33 144846.0 34 175046.0 35 208171.0 36 253056.0 37 318043.0 38 368805.0 39 341952.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.87447243069535 24.81336817185081 13.313632226608249 21.998527170845588 2 18.095357044384535 22.764113100141145 36.06015608185957 23.08037377361475 3 20.11570006491166 26.61810248781934 31.958102159371528 21.308095287897476 4 12.93099052082316 15.6239168785011 34.99239816172943 36.4526944389463 5 11.199940879393097 40.59554503754245 34.65146068522858 13.553053397835873 6 31.976339656530016 35.33190948323922 15.310854249552921 17.380896610677837 7 24.632721872982316 35.304293936594014 21.153379079775654 18.90960511064802 8 28.106619347132177 33.2618671221143 20.02870461045657 18.60280892029695 9 25.154564949259132 13.515325115799465 23.829018710289144 37.50109122465226 10 16.46145880961868 27.61805322064692 33.5881973141612 22.332290655573196 11 31.22574996304962 21.26820616496551 25.3366374031187 22.169406468866175 12 20.3233136581567 27.11933114195255 31.790420905876367 20.766934294014384 13 31.440926499429107 20.453525930522915 29.12009694396594 18.98545062608204 14 20.99520552622094 22.51241835262676 28.291155159612675 28.201220961539626 15 23.286604428686633 28.481136291149973 27.146168785875364 21.086090494288033 16 22.019487327532484 28.2345411281491 27.1548553662755 22.591116178042917 17 19.383996120858423 26.712444801319325 27.804015188118488 26.099543889703764 18 20.72216167065846 26.00995542617401 32.49943602052626 20.76844688264127 19 19.68448265579447 24.282838515173857 33.904890155813916 22.12778867321776 20 24.810991246865697 23.116070865209338 32.52052582766689 19.552412060258074 21 23.95789126130012 24.185384590784274 31.196146442780503 20.660577705135108 22 22.12273230552216 23.767477961583705 32.2664973719853 21.843292360908833 23 21.10013596010915 25.911161780429175 33.454916647723294 19.53378561173838 24 19.66412753455833 24.828839792662993 31.610206775186978 23.8968258975917 25 20.965774873223463 25.981864494531777 32.813017251289374 20.239343380955386 26 22.531347318871834 24.840076165319886 31.289278685378974 21.339297830429306 27 21.089591056538833 26.53270605562696 30.766268755018555 21.611434132815653 28 20.78335668482061 25.71404987393654 31.04990073096926 22.45269271027359 29 19.72493359735928 25.764786418164203 32.19696151196631 22.31331847251021 30 19.018597925419872 26.066742324909224 34.26912149716886 20.64553825250204 31 20.692082765392318 25.45993498461914 32.88592402310544 20.96205822688311 32 22.031026217914754 25.661152488813325 30.433326389831254 21.874494903440663 33 23.061099072826387 25.502676417533237 30.005868843872328 21.430355665768044 34 20.958860182357686 28.846145535227325 30.074410717079374 20.120583565335618 35 19.461656742644713 30.04044229820123 30.248012674628356 20.2498882845257 36 20.687372132240007 25.843052075401246 32.68561407208738 20.783961720271368 37 20.745758053237935 26.36238857623922 31.590543123037417 21.301310247485432 38 21.065735373051893 25.843484243580356 32.149423012264066 20.94135737110368 39 22.273342915942425 25.124745344900457 32.02737871848306 20.57453302067406 40 20.254771784949657 26.296526145742664 30.807497599305766 22.64120447000191 41 21.568044447632886 25.744949898743 30.62373968954767 22.063265964076454 42 18.76353226610842 27.69480628925708 31.206734563168727 22.334926881465776 43 19.650341369644682 27.41878047325873 30.618596888216242 22.312281268880348 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 179.0 1 249.5 2 320.0 3 880.5 4 1441.0 5 1441.0 6 2550.5 7 3660.0 8 4121.0 9 4582.0 10 7135.0 11 9688.0 12 9688.0 13 17958.5 14 26229.0 15 43068.0 16 59907.0 17 58262.5 18 56618.0 19 56618.0 20 61355.0 21 66092.0 22 53469.0 23 40846.0 24 43974.0 25 47102.0 26 47102.0 27 51276.5 28 55451.0 29 57415.5 30 59380.0 31 63225.0 32 67070.0 33 67070.0 34 72405.5 35 77741.0 36 84400.5 37 91060.0 38 95545.0 39 100030.0 40 100030.0 41 105598.5 42 111167.0 43 129296.5 44 147426.0 45 191297.5 46 235169.0 47 235169.0 48 239433.0 49 243697.0 50 222990.5 51 202284.0 52 190466.5 53 178649.0 54 178649.0 55 154557.5 56 130466.0 57 106800.5 58 83135.0 59 73021.0 60 62907.0 61 62907.0 62 54904.0 63 46901.0 64 40860.0 65 34819.0 66 29756.0 67 24693.0 68 24693.0 69 20789.0 70 16885.0 71 14486.0 72 12087.0 73 9596.5 74 7106.0 75 7106.0 76 5607.0 77 4108.0 78 3147.5 79 2187.0 80 1736.0 81 1285.0 82 1285.0 83 963.0 84 641.0 85 505.0 86 369.0 87 317.0 88 265.0 89 265.0 90 236.5 91 208.0 92 123.5 93 39.0 94 29.0 95 19.0 96 19.0 97 11.5 98 4.0 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2313914.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.17414262834375 #Duplication Level Percentage of deduplicated Percentage of total 1 74.71008533261008 31.508337945932297 2 13.621145369487142 11.489202551483094 3 4.9066648541715105 6.208031501679324 4 2.249861796285896 3.7954396916249222 5 1.1503848070517912 2.4258246465040973 6 0.6851756114633407 1.7338016377990546 7 0.4546908078215196 1.3423336486603126 8 0.3178282570248675 1.072330739446773 9 0.22505829383388273 0.854247652545768 >10 1.4193344743741487 11.548721574353642 >50 0.1527417785052482 4.481319512928798 >100 0.09099755427342934 7.07777029695739 >500 0.007390944674672241 2.1686009666832495 >1k 0.006974553425394931 5.711565308174563 >5k 9.368803108739459E-4 2.8064144504465958 >10k+ 7.286846862352913E-4 5.776057874780315 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 30865 1.3338870848268345 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 26758 1.1563956136658493 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 24448 1.0565647642911533 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 18636 0.8053886185917023 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10358 0.4476397999234198 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10266 0.4436638526755964 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10235 0.4423241313203516 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9918 0.42862440004252533 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9400 0.4062380883645632 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7092 0.30649367262568966 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7077 0.3058454203570228 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6953 0.30048653493604344 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6562 0.2835887591327941 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5673 0.24516900800980504 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5637 0.24361320256500457 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5612 0.24253278211722648 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4347 0.18786350745965494 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3837 0.16582293032498183 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3815 0.1648721603309371 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3662 0.1582599871905352 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3635 0.15709313310693485 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3547 0.15329005313075594 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3543 0.15311718585911144 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3122 0.13492290551852834 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2937 0.12692779420497047 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2866 0.12385940013328067 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2711 0.1171607933570565 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2651 0.11456778428238906 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2545 0.10998680158380994 No Hit CGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAG 2456 0.10614050478971992 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2432 0.10510330115985297 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2398 0.10363392935087476 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2380 0.10285602662847453 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2368 0.10233742481354102 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 1.2965045373337125E-4 0.0 0.0 0.0 0.0 7 1.2965045373337125E-4 0.0 0.0 0.0 0.0 8 1.2965045373337125E-4 0.0 0.0 0.0 0.0 9 1.2965045373337125E-4 0.0 0.0 8.64336358222475E-5 0.0 10 1.2965045373337125E-4 0.0 0.0 8.64336358222475E-5 0.0 11 1.2965045373337125E-4 0.0 0.0 2.1608408955561874E-4 0.0 12 1.2965045373337125E-4 0.0 0.0 2.593009074667425E-4 0.0 13 1.2965045373337125E-4 0.0 0.0 3.4573454328899E-4 0.0 14 1.2965045373337125E-4 0.0 0.0 3.889513612001137E-4 0.0 15 1.2965045373337125E-4 0.0 0.0 9.507699940447225E-4 0.0 16 1.2965045373337125E-4 0.0 0.0 0.002031190441822816 0.0 17 1.2965045373337125E-4 0.0 0.0 0.003759863158267766 0.0 18 1.2965045373337125E-4 0.0 0.0 0.00414881451946788 0.0 19 1.2965045373337125E-4 0.0 0.0 0.005099584513512602 0.0 20 1.2965045373337125E-4 0.0 0.0 0.006396089050846315 0.0 21 1.2965045373337125E-4 0.0 0.0 0.008254412221024637 0.0 22 1.2965045373337125E-4 0.0 0.0 0.01452085081813758 0.0 23 1.2965045373337125E-4 0.0 0.0 0.02454715257351829 0.0 24 1.2965045373337125E-4 0.0 0.0 0.037944366125966654 0.0 25 1.2965045373337125E-4 0.0 0.0 0.044037937451435104 0.0 26 1.2965045373337125E-4 0.0 0.0 0.051557663767970635 0.0 27 1.2965045373337125E-4 0.0 0.0 0.10436861525536385 0.0 28 1.72867271644495E-4 0.0 0.0 0.1594268412741355 0.0 29 1.72867271644495E-4 0.0 0.0 0.22520283813486586 0.0 30 2.1608408955561874E-4 0.0 0.0 0.35658196458468205 0.0 31 3.0251772537786626E-4 0.0 0.0 0.524522518987309 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6960 0.0 29.982758 1 GTATTGG 890 0.0 25.567415 1 ATTGGAC 980 0.0 24.540817 3 GACGCGA 40 0.0019317751 23.125002 33 TATTGGA 1185 0.0 20.763712 2 TTGGACC 1640 0.0 20.079268 4 ACGGTGT 105 2.262459E-8 19.380953 29 ACGTTTA 125 4.129106E-10 19.24 26 GCCGTCA 135 5.638867E-11 19.185186 13 TGGACCC 1680 0.0 19.160715 5 CGGATCG 80 1.6178241E-5 18.5 24 GTGACCG 70 1.2198754E-4 18.5 9 TATACCG 100 2.8780596E-7 18.499998 5 GGACCCT 1770 0.0 17.87288 6 GTATCAA 12245 0.0 17.69171 2 CGTCTGT 620 0.0 17.604837 34 CGACGAG 110 7.8160156E-7 16.818182 24 AGTATCA 415 0.0 16.493977 1 CCGTATA 90 4.4490902E-5 16.444445 2 CAATGCG 135 2.2224413E-8 16.444445 19 >>END_MODULE