##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088226_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3269579 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.966837014796095 31.0 30.0 33.0 27.0 34.0 2 30.800709510306984 31.0 31.0 34.0 27.0 34.0 3 30.790525324514256 31.0 31.0 34.0 27.0 34.0 4 34.97279496840419 35.0 35.0 37.0 32.0 37.0 5 34.883924199415276 35.0 35.0 37.0 32.0 37.0 6 34.98897197467931 35.0 35.0 37.0 32.0 37.0 7 34.598791159351094 35.0 35.0 37.0 30.0 37.0 8 34.82589103979442 35.0 35.0 37.0 32.0 37.0 9 36.22526049989922 38.0 35.0 39.0 32.0 39.0 10 36.17004238160326 38.0 35.0 39.0 32.0 39.0 11 36.266014982357056 38.0 35.0 39.0 32.0 39.0 12 35.99867322367803 38.0 35.0 39.0 30.0 39.0 13 36.167665011305736 38.0 35.0 39.0 32.0 39.0 14 37.06823906074758 39.0 36.0 40.0 31.0 41.0 15 37.11227164108896 39.0 36.0 40.0 31.0 41.0 16 37.02838836437352 39.0 36.0 40.0 31.0 41.0 17 37.13609886777472 39.0 36.0 40.0 31.0 41.0 18 37.13593370889647 39.0 36.0 40.0 31.0 41.0 19 37.217067396138766 39.0 36.0 40.0 31.0 41.0 20 37.178131496440365 39.0 36.0 40.0 31.0 41.0 21 37.10663666484278 39.0 36.0 40.0 31.0 41.0 22 37.030438475412275 39.0 36.0 40.0 31.0 41.0 23 36.89756846370741 39.0 35.0 40.0 31.0 41.0 24 36.827796178040046 39.0 35.0 40.0 31.0 41.0 25 36.73891286921038 38.0 35.0 40.0 30.0 41.0 26 36.47515475233968 38.0 35.0 40.0 30.0 41.0 27 36.33276608395148 38.0 35.0 40.0 30.0 41.0 28 36.16305340840518 38.0 35.0 40.0 30.0 41.0 29 35.997841006441504 38.0 34.0 40.0 29.0 41.0 30 35.83551766144816 38.0 34.0 40.0 29.0 41.0 31 35.57561783948331 38.0 34.0 40.0 28.0 41.0 32 35.33478652756211 38.0 34.0 40.0 27.0 41.0 33 35.460638510340324 38.0 34.0 40.0 27.0 41.0 34 35.45400248778206 38.0 34.0 40.0 27.0 41.0 35 35.356874386580046 38.0 34.0 40.0 27.0 41.0 36 35.26952950211633 38.0 34.0 40.0 26.0 41.0 37 35.10539827910566 38.0 33.0 40.0 26.0 41.0 38 34.97751728892313 38.0 33.0 40.0 25.0 41.0 39 34.92904529910426 38.0 33.0 40.0 25.0 41.0 40 34.76133685713054 38.0 33.0 40.0 24.0 41.0 41 34.59417772135189 38.0 33.0 40.0 24.0 41.0 42 34.37607747052449 38.0 33.0 40.0 23.0 41.0 43 34.03248399870442 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 6.0 15 11.0 16 49.0 17 99.0 18 308.0 19 637.0 20 1348.0 21 2793.0 22 5008.0 23 8445.0 24 14049.0 25 22113.0 26 33363.0 27 47781.0 28 67181.0 29 89511.0 30 114446.0 31 140196.0 32 170397.0 33 206325.0 34 248014.0 35 295238.0 36 358802.0 37 448566.0 38 517771.0 39 477120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.54866972169812 25.044753468259977 13.391877058177826 22.01469975186408 2 18.107835901808762 22.795381301384673 35.889299509202864 23.207483287603694 3 20.165012070361353 26.42450297117763 32.02069746594287 21.38978749251815 4 13.099362333805056 15.662719879226042 35.010348427121656 36.227569359847244 5 11.275580128206109 40.586265081834696 34.61500700854758 13.523147781411613 6 32.19405311815374 35.40697441474881 15.157823071410723 17.241149395686723 7 24.610263278544426 35.266008253662015 21.1395412069872 18.984187260806358 8 28.09107839266156 33.336035006341795 19.950458453519552 18.62242814747709 9 25.154308857501224 13.471887359198234 23.712043660667014 37.661760122633524 10 16.48362067409902 27.659279680961983 33.59502859542467 22.262071049514326 11 31.579080976480455 21.28047678309654 25.099959352564966 22.04048288785804 12 20.32656192127488 27.09409988258427 31.683283994667207 20.896054201473646 13 31.437044341182762 20.44009335758518 28.934489730940893 19.18837257029116 14 21.113176956421604 22.26595534165102 28.20207127584316 28.418796426084214 15 23.35517814373043 28.475409219352095 26.93132663257257 21.238086004344904 16 22.10489485037676 28.009844692542984 27.154444043101574 22.73081641397868 17 19.529242144019154 26.647253361977185 27.77449329103227 26.04901120297139 18 20.793013412430163 25.917312290053246 32.41977025176636 20.869904045750232 19 19.910055698302443 24.277590478774176 33.678189149122865 22.13416467380051 20 24.686664552225228 23.234826257447825 32.39120388282406 19.687305307502893 21 24.067532853618157 24.12215762335151 31.084124286337783 20.72618523669255 22 22.20099284953812 23.713328229720094 32.100554842075994 21.985124078665784 23 21.20936671051533 25.95120044507259 33.26367094968496 19.57576189472712 24 19.86399472225629 24.87947225009703 31.387955452368637 23.868577575278042 25 20.95242231492189 26.029712082197737 32.66527586579189 20.352589737088476 26 22.501582007958824 24.851150560974364 31.232797861743055 21.414469569323757 27 21.169086295208036 26.442578692853118 30.796900763064606 21.591434248874243 28 20.940402418782355 25.81274225213705 30.925143573530416 22.32171175555018 29 19.974467660821162 25.789191819497248 31.88266746269168 22.353673056989905 30 19.17109205802949 26.138105242295723 34.00667180698188 20.684130892692913 31 20.82032579729684 25.36075745531764 32.791530652723175 21.02738609466234 32 21.875721614311814 25.65935859020382 30.438505997255305 22.02641379822907 33 22.876829096345432 25.61256357469876 30.012426676339675 21.49818065261613 34 21.019525755456588 28.694734092676764 30.017014422957818 20.26872572890883 35 19.55814494771345 29.941805963397734 30.09797285827931 20.402076230609506 36 20.78714109675894 25.844703553576775 32.534249822377745 20.83390552728654 37 20.875287001782187 26.389941946654293 31.381471437148328 21.35329961441519 38 21.091094602699613 25.864583788922058 32.06743131149301 20.976890296885315 39 22.23745014266363 25.198993509561934 31.87401191407212 20.68954443370232 40 20.274200439873148 26.266225712851714 30.837884632853342 22.621689214421796 41 21.59984511767417 25.68832256385302 30.66997310662932 22.04185921184348 42 18.94097068766346 27.621323723941217 31.10158830846418 22.33611727993115 43 19.626257692504144 27.418637078351676 30.569409700759635 22.38569552838454 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 228.0 1 352.0 2 476.0 3 1292.5 4 2109.0 5 2109.0 6 3844.0 7 5579.0 8 6063.5 9 6548.0 10 10253.0 11 13958.0 12 13958.0 13 26378.0 14 38798.0 15 61918.5 16 85039.0 17 81837.0 18 78635.0 19 78635.0 20 84130.0 21 89625.0 22 71442.0 23 53259.0 24 58373.0 25 63487.0 26 63487.0 27 68902.0 28 74317.0 29 78227.0 30 82137.0 31 88421.5 32 94706.0 33 94706.0 34 102813.5 35 110921.0 36 120979.0 37 131037.0 38 137352.0 39 143667.0 40 143667.0 41 152932.5 42 162198.0 43 187131.0 44 212064.0 45 270503.0 46 328942.0 47 328942.0 48 336580.5 49 344219.0 50 315475.0 51 286731.0 52 268842.0 53 250953.0 54 250953.0 55 217235.5 56 183518.0 57 149836.0 58 116154.0 59 102160.5 60 88167.0 61 88167.0 62 78134.0 63 68101.0 64 59173.0 65 50245.0 66 43382.5 67 36520.0 68 36520.0 69 31007.5 70 25495.0 71 21355.0 72 17215.0 73 13951.5 74 10688.0 75 10688.0 76 8394.5 77 6101.0 78 4772.0 79 3443.0 80 2726.0 81 2009.0 82 2009.0 83 1509.5 84 1010.0 85 805.5 86 601.0 87 484.0 88 367.0 89 367.0 90 296.0 91 225.0 92 139.0 93 53.0 94 35.5 95 18.0 96 18.0 97 15.5 98 13.0 99 8.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3269579.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.62014289347916 #Duplication Level Percentage of deduplicated Percentage of total 1 71.40687751905045 27.577438133628938 2 14.34934027395279 11.083471436144245 3 5.652271182687214 6.548745622442239 4 2.761684266989774 4.266265640712733 5 1.5421300320636788 2.977864109931244 6 0.9463564395124475 2.192905255328094 7 0.6329795320320218 1.7112031983006981 8 0.4252528799219668 1.3138661590759917 9 0.32245755090666384 1.1208021023787023 >10 1.671479605616978 12.158356890064878 >50 0.16591567272368501 4.49369009755705 >100 0.10651265995652331 7.602148544431861 >500 0.007930603224838729 2.042677906250136 >1k 0.007289746398538484 6.019010047109527 >5k 8.010710328064268E-4 2.385898284451035 >10k+ 7.209639295257842E-4 6.505656572192706 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 42626 1.3037152489663042 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 37930 1.1600881948409871 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 34043 1.0412043874761858 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 24585 0.7519316707135689 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15565 0.47605517407592846 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 14808 0.4529023461430356 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 13971 0.42730272001379993 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 13967 0.42718038010398285 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 12789 0.3911512766628364 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 9783 0.2992128344352591 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 9597 0.2935240286287623 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 9316 0.2849296499641085 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 8930 0.27312384866675493 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 7906 0.24180483175356826 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7831 0.23951095844449696 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 7580 0.23183412910347173 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5671 0.17344740714324383 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5478 0.16754450649456704 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 5028 0.1537812666401393 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4998 0.15286371731651077 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4967 0.15191558301542799 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4943 0.15118154355652516 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4924 0.15060042898489379 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 4292 0.13127072323378638 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 4035 0.1234103840280354 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4020 0.12295160936622115 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 3838 0.11738514346954149 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3660 0.11194101748267897 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3578 0.1094330493314277 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3576 0.10937187937651913 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 3447 0.1054264172849165 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 3.058497745428387E-5 0.0 0.0 0.0 0.0 3 3.058497745428387E-5 0.0 0.0 0.0 0.0 4 3.058497745428387E-5 0.0 0.0 0.0 0.0 5 3.058497745428387E-5 0.0 0.0 0.0 0.0 6 3.058497745428387E-5 0.0 0.0 0.0 0.0 7 3.058497745428387E-5 0.0 0.0 0.0 0.0 8 3.058497745428387E-5 0.0 0.0 0.0 0.0 9 3.058497745428387E-5 0.0 0.0 3.058497745428387E-5 0.0 10 3.058497745428387E-5 0.0 0.0 6.116995490856774E-5 0.0 11 3.058497745428387E-5 0.0 0.0 3.058497745428387E-4 0.0 12 3.058497745428387E-5 0.0 0.0 5.199446167228257E-4 0.0 13 3.058497745428387E-5 0.0 0.0 6.116995490856774E-4 0.0 14 3.058497745428387E-5 0.0 0.0 9.175493236285161E-4 0.0 15 3.058497745428387E-5 0.0 0.0 0.001406908962897058 0.0 16 3.058497745428387E-5 0.0 0.0 0.0022327033541627225 0.0 17 3.058497745428387E-5 0.0 0.0 0.0033337625425169416 0.0 18 3.058497745428387E-5 0.0 0.0 0.0038231221817854838 0.0 19 3.058497745428387E-5 0.0 0.0 0.0046489165730511485 0.0 20 3.058497745428387E-5 0.0 0.0 0.0056888058064968 0.0 21 3.058497745428387E-5 0.0 0.0 0.008472038754836632 0.0 22 3.058497745428387E-5 0.0 0.0 0.013732654876973458 0.0 23 3.058497745428387E-5 0.0 0.0 0.022969318068167186 0.0 24 3.058497745428387E-5 0.0 0.0 0.03731367249422632 0.0 25 3.058497745428387E-5 0.0 0.0 0.0434306679850831 0.0 26 3.058497745428387E-5 0.0 0.0 0.0510157423937455 0.0 27 6.116995490856774E-5 0.0 0.0 0.10056340586968536 0.0 28 1.2233990981713548E-4 0.0 0.0 0.15390360654995644 0.0 29 1.2233990981713548E-4 0.0 0.0 0.21797913431668114 0.0 30 1.2233990981713548E-4 0.0 0.0 0.3428270122850679 0.0 31 1.5292488727141934E-4 0.0 0.0 0.5096374793207321 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9820 0.0 29.181772 1 GTATTGG 1380 0.0 21.985508 1 ATTGGAC 1495 0.0 21.408028 3 CGCGATA 70 1.22007084E-4 18.5 14 TTGGACC 2330 0.0 18.023605 4 TATTGGA 1775 0.0 17.926762 2 GTATCAA 16935 0.0 17.565989 2 TGGACCC 2345 0.0 17.434969 5 ACGTTTA 225 0.0 17.266666 26 GGACCCT 2370 0.0 17.251055 6 CGTCTGT 950 0.0 15.968421 34 CGATCTG 330 0.0 15.69697 33 GACCCTC 2570 0.0 15.40467 7 CGTATAC 170 1.4897523E-9 15.235294 3 GAACCGT 135 3.9783663E-7 15.074075 6 TAAACGT 175 2.242814E-9 14.799999 4 ATCACGT 240 0.0 14.645833 23 AGTATCA 710 0.0 14.591549 1 TGCGACG 140 6.00412E-7 14.535714 22 CTTGCGA 115 2.2121998E-5 14.478261 10 >>END_MODULE