##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088220_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2259395 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.920579624191433 31.0 30.0 33.0 27.0 34.0 2 30.70657941617114 31.0 31.0 34.0 27.0 34.0 3 30.67541930472538 31.0 30.0 34.0 27.0 34.0 4 34.85640359476763 35.0 35.0 37.0 32.0 37.0 5 34.772736506896756 35.0 35.0 37.0 32.0 37.0 6 34.88727424819476 35.0 35.0 37.0 32.0 37.0 7 34.46601191911994 35.0 35.0 37.0 30.0 37.0 8 34.727141115210046 35.0 35.0 37.0 31.0 37.0 9 36.11024013065445 38.0 35.0 39.0 31.0 39.0 10 36.04223918349824 37.0 35.0 39.0 30.0 39.0 11 36.147968372064206 38.0 35.0 39.0 31.0 39.0 12 35.89607129342147 37.0 35.0 39.0 30.0 39.0 13 36.06344972879908 38.0 35.0 39.0 31.0 39.0 14 36.92766780487697 38.0 36.0 40.0 31.0 41.0 15 36.96178313221017 38.0 36.0 40.0 31.0 41.0 16 36.865076270417525 38.0 36.0 40.0 31.0 41.0 17 36.990197818442546 38.0 36.0 40.0 31.0 41.0 18 37.00738781842042 38.0 36.0 40.0 31.0 41.0 19 37.10495553013085 39.0 36.0 40.0 31.0 41.0 20 37.06177096081031 39.0 36.0 40.0 31.0 41.0 21 37.0126188647846 39.0 36.0 40.0 31.0 41.0 22 36.92961080289192 39.0 36.0 40.0 31.0 41.0 23 36.802645398436304 39.0 35.0 40.0 31.0 41.0 24 36.72899736433868 38.0 35.0 40.0 30.0 41.0 25 36.639634061330575 38.0 35.0 40.0 30.0 41.0 26 36.37686460313491 38.0 35.0 40.0 30.0 41.0 27 36.21168365867854 38.0 35.0 40.0 30.0 41.0 28 36.03093305951372 38.0 34.0 40.0 29.0 41.0 29 35.852035168706664 38.0 34.0 40.0 29.0 41.0 30 35.67626333598154 38.0 34.0 40.0 28.0 41.0 31 35.39886075697255 38.0 34.0 40.0 27.0 41.0 32 35.19291004892903 37.0 34.0 40.0 27.0 41.0 33 35.282565022937554 38.0 34.0 40.0 27.0 41.0 34 35.258313840652036 38.0 34.0 40.0 27.0 41.0 35 35.112406639830574 38.0 33.0 40.0 26.0 41.0 36 35.01225947654129 38.0 33.0 40.0 25.0 41.0 37 34.84235381595516 38.0 33.0 40.0 25.0 41.0 38 34.69568180862576 38.0 33.0 40.0 24.0 41.0 39 34.618111928193166 38.0 33.0 40.0 24.0 41.0 40 34.41278351063006 38.0 33.0 40.0 23.0 41.0 41 34.23595254481842 38.0 33.0 40.0 22.0 41.0 42 34.00610517417273 37.0 33.0 40.0 21.0 41.0 43 33.66149787885695 37.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 5.0 15 11.0 16 27.0 17 90.0 18 214.0 19 564.0 20 1057.0 21 2202.0 22 3906.0 23 6808.0 24 10978.0 25 17016.0 26 25380.0 27 36485.0 28 50444.0 29 66540.0 30 83371.0 31 101733.0 32 121764.0 33 146853.0 34 173861.0 35 204583.0 36 246344.0 37 306498.0 38 350069.0 39 302591.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.423473983079546 25.585344749368748 13.796215358536246 21.19496590901547 2 18.107502229579158 23.28968595575364 35.909391673434705 22.693420141232497 3 20.30782576751741 26.988596504816552 32.41102153452584 20.2925561931402 4 12.984405117299099 16.027564901223556 35.141265692807146 35.846764288670194 5 10.596907579241345 41.426311025739196 34.70663606850506 13.270145326514399 6 31.487632751245354 35.77506367855111 15.127545205685594 17.609758364517937 7 23.811728360910774 36.007515286171746 21.34040307250392 18.840353280413563 8 28.097521681689123 33.50538529119521 20.051518216159636 18.34557481095603 9 24.730248584244897 13.438686019930113 24.372497947459387 37.458567448365606 10 16.319589978733244 28.057865047944254 33.79471053091646 21.82783444240604 11 30.610052691096513 21.319733822549843 25.771013921868462 22.299199564485185 12 19.968929735615067 27.672983254366766 32.14577353672111 20.212313473297055 13 31.40597372305418 20.577234171094474 29.822186912868272 18.194605192983076 14 20.799284764284245 22.5845414369776 29.0410043396573 27.57516945908086 15 23.02094144671472 28.608233620062006 27.834663704221708 20.536161229001568 16 21.39794059914269 28.227512232256863 28.038125250343565 22.336421918256878 17 18.6787170901945 26.84404453404562 28.564151022729533 25.913087353030345 18 20.05399675576869 25.845281590868353 33.655115639363636 20.445606013999324 19 19.14061065019618 24.096804675587936 35.298962775433246 21.46362189878264 20 24.412243100476015 22.8579332077835 33.80732452714111 18.922499164599373 21 23.578126002757376 23.834035217392266 32.44837666720516 20.139462112645198 22 21.563073300595956 23.382719710364945 33.54079299989599 21.513413989143114 23 20.52009498117859 25.978945691213802 34.77939890988517 18.721560417722444 24 19.0554551107708 24.578924889184936 32.81174827774692 23.55387172229734 25 20.259494245140843 25.887372504586402 34.223232325467656 19.629900924805092 26 22.004607428094687 24.53599304238524 32.69786823463804 20.761531294882037 27 20.436754086824127 26.47522898829111 31.9683809161302 21.119636008754554 28 20.216164061618265 25.683689660285165 32.27363962476681 21.826506653329762 29 19.260510003784198 25.650008077383546 33.340518147557205 21.748963771275054 30 18.348584466195597 25.89697684557149 35.556465336959675 20.197973351273237 31 20.012127140230017 25.125708430796738 34.30776822999077 20.554396198982474 32 21.365011430050966 25.570207953899164 31.630502855853003 21.434277760196867 33 22.54094569563976 25.556443207141733 31.05503907019357 20.84757202702493 34 20.39979729086769 28.941154601121095 31.20211384020944 19.456934267801778 35 18.809194496756877 30.25509041137119 31.30962049575218 19.62609459611976 36 20.14880089581503 25.796640251040653 33.87004043117737 20.184518421966942 37 20.20514341228515 26.482664607118277 32.62364482527402 20.688547155322553 38 20.6011343744675 25.974342689082697 33.11744958274228 20.30707335370752 39 21.93157902889933 25.334215575408457 32.84746580389883 19.88673959179338 40 19.81720770383222 26.39662387497538 31.56313969004977 22.22302873114263 41 21.21882185275262 26.00598832873402 31.272619440159865 21.502570378353496 42 18.216115376018802 28.09659222933573 31.746817178935068 21.9404752157104 43 19.282020186819924 27.81943838948037 31.11695830078406 21.78158312291565 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 149.0 1 223.0 2 297.0 3 835.0 4 1373.0 5 1373.0 6 2702.5 7 4032.0 8 4455.0 9 4878.0 10 7814.5 11 10751.0 12 10751.0 13 20266.5 14 29782.0 15 48928.5 16 68075.0 17 64952.5 18 61830.0 19 61830.0 20 66459.5 21 71089.0 22 56063.0 23 41037.0 24 43846.5 25 46656.0 26 46656.0 27 50013.0 28 53370.0 29 56417.0 30 59464.0 31 63169.5 32 66875.0 33 66875.0 34 72953.0 35 79031.0 36 86121.5 37 93212.0 38 96971.0 39 100730.0 40 100730.0 41 106613.0 42 112496.0 43 130304.5 44 148113.0 45 192634.5 46 237156.0 47 237156.0 48 242934.0 49 248712.0 50 223943.5 51 199175.0 52 184642.0 53 170109.0 54 170109.0 55 143264.0 56 116419.0 57 92405.0 58 68391.0 59 58295.0 60 48199.0 61 48199.0 62 42411.0 63 36623.0 64 32140.5 65 27658.0 66 23535.5 67 19413.0 68 19413.0 69 16330.0 70 13247.0 71 11053.0 72 8859.0 73 7113.0 74 5367.0 75 5367.0 76 4182.0 77 2997.0 78 2365.5 79 1734.0 80 1394.0 81 1054.0 82 1054.0 83 765.5 84 477.0 85 378.0 86 279.0 87 224.5 88 170.0 89 170.0 90 129.0 91 88.0 92 53.0 93 18.0 94 11.0 95 4.0 96 4.0 97 4.5 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2259395.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.05380770408799 #Duplication Level Percentage of deduplicated Percentage of total 1 73.88678882946522 29.594472316479564 2 13.678033819332214 10.957146727390894 3 5.1237266933292736 6.156742911087401 4 2.307758765216013 3.697381032375429 5 1.2853709145553034 2.5741999720012916 6 0.7534543825364006 1.810723017114921 7 0.5114818430673449 1.4340756770446357 8 0.34541335745609636 1.1068096158375913 9 0.2539020775771173 0.9152770491848058 >10 1.5817756658223887 12.199496033515377 >50 0.16292164802246878 4.499617039651135 >100 0.09192776828370622 6.845771674029753 >500 0.007715719475701624 2.1663532597134436 >1k 0.007939363518475585 6.432189835856502 >5k 7.827541497088605E-4 2.1177572192158194 >10k+ 0.0010063981924828206 7.491986619501464 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34698 1.5357208456246032 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 30643 1.356248022147522 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 27664 1.2243985668729904 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 19003 0.8410658605511653 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11954 0.5290796872614129 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 11383 0.5038074351762307 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10726 0.4747288544057148 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10708 0.4739321809599472 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10494 0.46446061888248846 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8020 0.3549622797253247 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7576 0.3353110013963915 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7433 0.328981873466127 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6892 0.30503741045722416 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5880 0.26024665895073684 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5809 0.25710422480354256 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5673 0.2510849143244098 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4521 0.20009781379528593 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4230 0.18721825975537698 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4103 0.18159728599912808 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3995 0.1768172453245227 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3901 0.172656839552181 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3778 0.167212904339436 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3774 0.1670358657959321 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3434 0.15198758959810038 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3409 0.15088109870120098 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3077 0.13618689959037708 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2811 0.12441383644736755 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2783 0.12317456664284022 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2760 0.1221565950176928 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2756 0.1219795564741889 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2649 0.1172437754354595 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2591 0.1146767165546529 No Hit CGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAG 2473 0.10945407952128777 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2470 0.10932130061365986 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 2346 0.10383310576503887 No Hit ATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAG 2323 0.10281513413989143 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 4.425963587597565E-5 0.0 0.0 0.0 0.0 5 4.425963587597565E-5 0.0 0.0 0.0 0.0 6 1.770385435039026E-4 0.0 0.0 0.0 0.0 7 1.770385435039026E-4 0.0 0.0 0.0 0.0 8 1.770385435039026E-4 0.0 0.0 0.0 0.0 9 1.770385435039026E-4 0.0 0.0 0.0 0.0 10 1.770385435039026E-4 0.0 0.0 4.425963587597565E-5 0.0 11 1.770385435039026E-4 0.0 0.0 1.770385435039026E-4 0.0 12 1.770385435039026E-4 0.0 0.0 1.770385435039026E-4 0.0 13 1.770385435039026E-4 0.0 0.0 3.0981745113182953E-4 0.0 14 1.770385435039026E-4 0.0 0.0 3.9833672288378083E-4 0.0 15 1.770385435039026E-4 0.0 0.0 7.081541740156104E-4 0.0 16 2.2129817937987826E-4 0.0 0.0 0.0015490872556591477 0.0 17 2.2129817937987826E-4 0.0 0.0 0.0028326166960624417 0.0 18 2.2129817937987826E-4 0.0 0.0 0.0035850305059540277 0.0 19 2.2129817937987826E-4 0.0 0.0 0.004204665408217687 0.0 20 2.655578152558539E-4 0.0 0.0 0.005620973756248908 0.0 21 2.655578152558539E-4 0.0 0.0 0.008188032637055495 0.0 22 3.0981745113182953E-4 0.0 0.0 0.012923813675784889 0.0 23 3.0981745113182953E-4 0.0 0.0 0.02226259684561575 0.0 24 3.0981745113182953E-4 0.0 0.0 0.035230670157276614 0.0 25 3.0981745113182953E-4 0.0 0.0 0.03947959520137028 0.0 26 3.0981745113182953E-4 0.0 0.0 0.046428358033898456 0.0 27 3.0981745113182953E-4 0.0 0.0 0.08980280119235459 0.0 28 3.0981745113182953E-4 0.0 0.0 0.13906377592231547 0.0 29 3.0981745113182953E-4 0.0 0.0 0.1950522153054247 0.0 30 3.0981745113182953E-4 0.0 0.0 0.314420453262931 0.0 31 3.0981745113182953E-4 4.425963587597565E-5 0.0 0.45352848882112246 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7490 0.0 30.454605 1 GTATTGG 870 0.0 21.264366 1 ACGTATA 45 0.0038269346 20.555555 29 ATTGGAC 910 0.0 19.516483 3 TATTGGA 965 0.0 18.787565 2 ACGACGC 90 2.154089E-6 18.5 27 GTATCAA 12830 0.0 18.413485 2 AGCCGTC 145 1.546141E-10 17.86207 12 AGTATCA 425 0.0 17.84706 1 TTGGACC 1585 0.0 17.741323 4 ACGTTTA 130 1.3951649E-8 17.076921 26 GTGTCGC 65 0.0015805732 17.076921 11 GGACCCT 1610 0.0 17.006212 6 CGATCTG 175 7.2759576E-12 16.914286 33 GTGCGAA 110 7.8158155E-7 16.818182 12 CGTCTGT 555 0.0 16.333334 34 TGGACCC 1670 0.0 16.062874 5 TATACCG 140 3.477726E-8 15.857143 5 GTTATAC 170 1.4879333E-9 15.235293 3 ACGCTGC 135 3.9767838E-7 15.074073 30 >>END_MODULE