##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088218_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1861241 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.33508718107972 31.0 30.0 33.0 27.0 34.0 2 30.759626507260478 31.0 31.0 34.0 27.0 34.0 3 30.959720423094055 31.0 31.0 34.0 27.0 34.0 4 35.013261044647095 35.0 35.0 37.0 32.0 37.0 5 34.84773008976269 35.0 35.0 37.0 32.0 37.0 6 34.883772171363084 35.0 35.0 37.0 32.0 37.0 7 34.68381257451345 35.0 35.0 37.0 31.0 37.0 8 34.80593485744189 35.0 35.0 37.0 32.0 37.0 9 36.25998298984387 38.0 35.0 39.0 32.0 39.0 10 36.11878794847094 38.0 35.0 39.0 31.0 39.0 11 36.17322044807739 38.0 35.0 39.0 31.0 39.0 12 35.986968909453424 38.0 35.0 39.0 30.0 39.0 13 36.047145426089365 38.0 35.0 39.0 30.0 39.0 14 36.891895246236245 38.0 36.0 40.0 31.0 41.0 15 36.979168737417666 38.0 36.0 40.0 31.0 41.0 16 36.93081712685246 38.0 36.0 40.0 31.0 41.0 17 37.05186217152964 39.0 36.0 40.0 31.0 41.0 18 37.06120862370859 39.0 36.0 40.0 31.0 41.0 19 37.17648225028355 39.0 36.0 40.0 31.0 41.0 20 37.14823013247613 39.0 36.0 40.0 31.0 41.0 21 37.03467041613633 39.0 36.0 40.0 31.0 41.0 22 36.986899063581774 39.0 36.0 40.0 31.0 41.0 23 36.84500771259606 39.0 35.0 40.0 31.0 41.0 24 36.78148933963952 39.0 35.0 40.0 30.0 41.0 25 36.677036987687245 38.0 35.0 40.0 30.0 41.0 26 36.38621919461263 38.0 35.0 40.0 30.0 41.0 27 36.2323605594332 38.0 35.0 40.0 30.0 41.0 28 36.06589420714459 38.0 34.0 40.0 30.0 41.0 29 35.93650365535683 38.0 34.0 40.0 29.0 41.0 30 35.75028435328902 38.0 34.0 40.0 29.0 41.0 31 35.478001505447175 38.0 34.0 40.0 27.0 41.0 32 35.13697420162139 37.0 34.0 40.0 27.0 41.0 33 35.27688515350779 38.0 34.0 40.0 27.0 41.0 34 35.236675959749434 38.0 34.0 40.0 27.0 41.0 35 35.13911793260518 38.0 33.0 40.0 26.0 41.0 36 35.026475346287775 38.0 33.0 40.0 25.0 41.0 37 34.881573638233846 38.0 33.0 40.0 25.0 41.0 38 34.74268404790137 38.0 33.0 40.0 25.0 41.0 39 34.66753848641847 38.0 33.0 40.0 24.0 41.0 40 34.475111498188575 38.0 33.0 40.0 23.0 41.0 41 34.31879267649917 38.0 33.0 40.0 23.0 41.0 42 34.09105376466562 38.0 33.0 40.0 21.0 41.0 43 33.72776980519986 37.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 2.0 15 11.0 16 26.0 17 74.0 18 180.0 19 417.0 20 839.0 21 1704.0 22 3177.0 23 5419.0 24 8707.0 25 13587.0 26 20421.0 27 29488.0 28 40249.0 29 52944.0 30 67274.0 31 81118.0 32 98244.0 33 118357.0 34 141323.0 35 166899.0 36 204161.0 37 256958.0 38 298355.0 39 251305.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.26654312901983 24.80253766169991 14.326892648507098 21.604026560773164 2 17.49477902109399 23.955522148931816 35.933336950991304 22.616361878982893 3 20.22414077489159 26.039400593474998 32.74637728268397 20.990081348949438 4 13.420346962053811 16.444780659785593 35.32863288526311 34.806239492897475 5 11.157555630893581 41.03826425487081 34.361321290472326 13.442858823763284 6 31.230614412641888 36.221316852573096 15.584440703809985 16.96362803097503 7 23.900397637920076 35.93596960307666 21.563139862059778 18.60049289694349 8 27.53711099207464 33.74383005747241 20.523242288344175 18.195816662108776 9 25.010785814410923 13.704351021710783 24.706956272723417 36.57790689115488 10 16.26989734268695 28.44193739553341 34.03207859702209 21.256086664757547 11 31.023709449770344 22.236077971632906 25.35448123053382 21.385731348062933 12 19.96549613940376 28.16002871202601 31.89071162734971 19.983763521220517 13 30.752331374604363 21.459176968485004 29.415427663585746 18.373063993324884 14 20.820302153240767 23.024100586651596 29.2234052441355 26.932192015972138 15 22.932817405161394 29.475924933955355 27.258587146962697 20.33267051392055 16 21.355106619723077 28.55739799413402 28.13907495053032 21.948420435612583 17 19.01596837808752 27.71881771355778 28.641535405678255 24.62367850267644 18 19.90193639620017 26.778531098337076 33.24325006809972 20.076282437363027 19 19.22115405796455 25.628975506127365 34.7738954815631 20.375974954344976 20 23.37445822437825 24.489252063542548 33.321853537505355 18.814436174573846 21 22.850721642173152 25.184540852044417 32.14081357545852 19.823923930323907 22 21.112257896747387 25.22413808851191 32.76002409145296 20.90357992328774 23 20.429810003110827 27.13850597531432 33.629873831492 18.801810190082854 24 18.98690174996145 26.520047645629987 32.085151788511 22.407898815897564 25 20.16949981222206 27.236505106001857 33.16674197484367 19.42725310693242 26 21.076475319423977 26.18193989923927 32.12566239406933 20.61592238726742 27 20.309084100339504 27.46855458266823 31.651999929079576 20.57036138791269 28 19.898497830211134 27.269278938084856 31.73151676757604 21.100706464127967 29 18.851024665800935 27.361905309414524 32.59121199242871 21.195858032355833 30 18.41685198209152 27.36915853454765 34.709261186487936 19.50472829687289 31 19.872171309357572 26.880774708917333 33.1646465986941 20.082407383030997 32 20.828522475058307 27.23193826054767 31.34779429423702 20.59174497015701 33 21.72383909445365 27.18154177777085 30.757919044336546 20.336700083438952 34 19.956899724431175 29.718451291369576 30.98104974046886 19.34359924373039 35 18.615536623145527 30.51163175537182 31.054495360890932 19.818336260591725 36 19.544110622966073 27.194490127823318 33.22020093045446 20.04119831875614 37 19.68616638038814 27.366472154868717 32.24719421074433 20.70016725399881 38 19.933796859192334 27.08746476141456 32.785759608777155 20.192978770615948 39 21.075615677926717 26.40630633002389 32.50847149831752 20.009606493731873 40 19.187413129197132 27.138344792533587 31.89468746927453 21.77955460899475 41 20.061614804316044 26.63405759920397 31.78175206757212 21.522575528907865 42 17.689541547816752 28.2188066994011 32.16853701374513 21.92311473903702 43 18.285810381353087 27.964567726586726 31.69342390372875 22.05619798833144 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 165.0 1 295.0 2 425.0 3 941.5 4 1458.0 5 1458.0 6 2586.5 7 3715.0 8 4203.0 9 4691.0 10 7161.0 11 9631.0 12 9631.0 13 16892.5 14 24154.0 15 39292.5 16 54431.0 17 53011.5 18 51592.0 19 51592.0 20 55026.0 21 58460.0 22 47882.5 23 37305.0 24 40160.5 25 43016.0 26 43016.0 27 46528.5 28 50041.0 29 50931.0 30 51821.0 31 55986.5 32 60152.0 33 60152.0 34 65080.5 35 70009.0 36 76117.5 37 82226.0 38 85814.5 39 89403.0 40 89403.0 41 93983.5 42 98564.0 43 112516.0 44 126468.0 45 156506.5 46 186545.0 47 186545.0 48 192596.5 49 198648.0 50 179258.0 51 159868.0 52 145469.5 53 131071.0 54 131071.0 55 111955.0 56 92839.0 57 74979.0 58 57119.0 59 47774.5 60 38430.0 61 38430.0 62 32299.0 63 26168.0 64 22576.0 65 18984.0 66 15625.5 67 12267.0 68 12267.0 69 10286.0 70 8305.0 71 6883.0 72 5461.0 73 4506.5 74 3552.0 75 3552.0 76 2760.0 77 1968.0 78 1496.5 79 1025.0 80 819.0 81 613.0 82 613.0 83 474.5 84 336.0 85 256.0 86 176.0 87 131.5 88 87.0 89 87.0 90 64.5 91 42.0 92 25.5 93 9.0 94 5.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1861241.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.28248385548449 #Duplication Level Percentage of deduplicated Percentage of total 1 70.69865612385428 27.772188177897554 2 14.207541209543356 11.162150163800352 3 5.765393429451177 6.794369229387967 4 3.0094258328061754 4.728708867659462 5 1.7090586958266762 3.35680353134434 6 1.021854880624315 2.408459871046361 7 0.6931205873239152 1.9059248797018942 8 0.47017497569778344 1.4775712713680795 9 0.3659126083163682 1.2936560515835358 >10 1.7861734838828043 12.831860323696489 >50 0.16469752518447528 4.499948846499961 >100 0.089946209760815 6.919508328008763 >500 0.008744612129692053 2.4159118789893763 >1k 0.008050595294002207 6.200138929127042 >5k 6.940168356898453E-4 1.8366884455122583 >10k+ 5.552134685518763E-4 4.396111204376601 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 25380 1.3636063250272266 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 24397 1.3107921005393712 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 20273 1.0892195046208417 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10575 0.5681693020946778 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8650 0.4647436844556938 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 7111 0.38205691793808544 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6743 0.3622851635011264 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 5647 0.30339972093887896 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5534 0.29732850286448664 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 4962 0.2665963193374743 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4898 0.26315775334843794 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4546 0.24424564040873803 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 4148 0.22286205816441826 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3731 0.20045765164210333 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3576 0.1921298746374059 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3477 0.1868108428731153 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3435 0.1845542839428102 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3203 0.17208948223255344 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2877 0.15457428672589954 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2709 0.14554805100467913 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2585 0.1388858294009212 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 2571 0.13813364309081952 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2373 0.1274955795622383 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2053 0.11030274961705656 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2048 0.11003411164916312 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2002 0.10756264234454324 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1990 0.10691791122159892 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 1921 0.10321070726466912 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1876 0.10079296555362792 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 1866 0.10025568961784101 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.372759357869293E-5 0.0 5 0.0 0.0 0.0 5.372759357869293E-5 0.0 6 0.0 0.0 0.0 5.372759357869293E-5 0.0 7 0.0 0.0 0.0 5.372759357869293E-5 0.0 8 0.0 0.0 0.0 5.372759357869293E-5 0.0 9 0.0 0.0 0.0 5.372759357869293E-5 0.0 10 0.0 5.372759357869293E-5 0.0 1.0745518715738586E-4 0.0 11 0.0 5.372759357869293E-5 0.0 1.611827807360788E-4 0.0 12 0.0 5.372759357869293E-5 0.0 1.611827807360788E-4 0.0 13 0.0 5.372759357869293E-5 0.0 1.611827807360788E-4 0.0 14 0.0 5.372759357869293E-5 0.0 2.149103743147717E-4 0.0 15 0.0 5.372759357869293E-5 0.0 3.223655614721576E-4 0.0 16 0.0 5.372759357869293E-5 0.0 8.059139036803939E-4 0.0 17 0.0 5.372759357869293E-5 0.0 0.0012894622458886303 0.0 18 0.0 5.372759357869293E-5 0.0 0.0016655554009394806 0.0 19 0.0 5.372759357869293E-5 0.0 0.002095376149569024 0.0 20 0.0 5.372759357869293E-5 0.0 0.002740107272513339 0.0 21 0.0 5.372759357869293E-5 0.0 0.003599748769772426 0.0 22 0.0 1.0745518715738586E-4 0.0 0.006286128448707073 0.0 23 0.0 1.0745518715738586E-4 0.0 0.010154515186372963 0.0 24 0.0 1.0745518715738586E-4 0.0 0.016816736790130887 5.372759357869293E-5 25 0.0 1.0745518715738586E-4 0.0 0.021598492618634557 5.372759357869293E-5 26 0.0 1.0745518715738586E-4 0.0 0.030194907591225423 5.372759357869293E-5 27 0.0 1.0745518715738586E-4 0.0 0.09434565432418478 5.372759357869293E-5 28 0.0 1.0745518715738586E-4 0.0 0.1633318844792265 5.372759357869293E-5 29 0.0 1.0745518715738586E-4 0.0 0.24021607089033606 5.372759357869293E-5 30 0.0 1.0745518715738586E-4 0.0 0.38323892499681667 5.372759357869293E-5 31 0.0 1.0745518715738586E-4 0.0 0.6068531694713366 5.372759357869293E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5560 0.0 28.781475 1 ATTGGAC 520 0.0 22.413464 3 GTATTGG 595 0.0 21.142857 1 TTGGACC 950 0.0 20.057894 4 GGACCCT 960 0.0 19.078125 6 TATTGGA 680 0.0 18.5 2 CTGTGCG 200 0.0 18.5 9 GACCCTC 980 0.0 18.12245 7 TGGACCC 1030 0.0 17.961164 5 GTATCAA 9465 0.0 17.180666 2 ACAGCGC 65 0.0015804307 17.076925 8 ATAACCG 65 0.0015804307 17.076925 10 ATAATAC 215 0.0 16.348837 3 TTTTTAC 1555 0.0 16.299036 1 CGTTTAG 105 9.34924E-6 15.857142 26 GTTATCA 210 0.0 15.857142 1 CGTCTGT 495 0.0 15.696969 34 CGGGATA 130 2.5912777E-7 15.653848 24 TAGGTCG 155 7.215931E-9 15.516129 21 GGTCGTC 175 2.240995E-9 14.8 23 >>END_MODULE