##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088217_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3804875 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.477265087552155 31.0 31.0 33.0 27.0 34.0 2 30.87523322053944 31.0 31.0 34.0 27.0 34.0 3 31.079195768586352 31.0 31.0 34.0 28.0 34.0 4 35.12118137915174 35.0 35.0 37.0 32.0 37.0 5 34.951877262722164 35.0 35.0 37.0 32.0 37.0 6 34.9813476132593 36.0 35.0 37.0 32.0 37.0 7 34.80144498833733 35.0 35.0 37.0 32.0 37.0 8 34.90029449062059 36.0 35.0 37.0 32.0 37.0 9 36.40092933407799 38.0 35.0 39.0 32.0 39.0 10 36.256687539012454 38.0 35.0 39.0 32.0 39.0 11 36.291620881106475 38.0 35.0 39.0 32.0 39.0 12 36.119073556949964 38.0 35.0 39.0 31.0 39.0 13 36.186025822136074 38.0 35.0 39.0 32.0 39.0 14 37.08461513190315 39.0 36.0 40.0 31.0 41.0 15 37.15508945760373 39.0 36.0 40.0 31.0 41.0 16 37.13269555504451 39.0 36.0 40.0 31.0 41.0 17 37.20278537402674 39.0 36.0 40.0 31.0 41.0 18 37.2021540786491 39.0 36.0 40.0 31.0 41.0 19 37.30102644633529 39.0 36.0 40.0 31.0 41.0 20 37.26131975426262 39.0 36.0 40.0 31.0 41.0 21 37.15010847925359 39.0 36.0 40.0 31.0 41.0 22 37.098474719931666 39.0 36.0 40.0 31.0 41.0 23 36.9763188015375 39.0 36.0 40.0 31.0 41.0 24 36.91071980025625 39.0 35.0 40.0 31.0 41.0 25 36.81328663885147 39.0 35.0 40.0 30.0 41.0 26 36.55242103879891 38.0 35.0 40.0 30.0 41.0 27 36.41053043792503 38.0 35.0 40.0 30.0 41.0 28 36.26842537534085 38.0 35.0 40.0 30.0 41.0 29 36.152165839876474 38.0 35.0 40.0 30.0 41.0 30 36.00166680902789 38.0 35.0 40.0 29.0 41.0 31 35.76521856828411 38.0 34.0 40.0 29.0 41.0 32 35.46181464568481 38.0 34.0 40.0 27.0 41.0 33 35.63770320969808 38.0 34.0 40.0 28.0 41.0 34 35.623175005749204 38.0 34.0 40.0 28.0 41.0 35 35.55958027530471 38.0 34.0 40.0 27.0 41.0 36 35.47012608824206 38.0 34.0 40.0 27.0 41.0 37 35.351402345674956 38.0 34.0 40.0 27.0 41.0 38 35.239843096028125 38.0 34.0 40.0 26.0 41.0 39 35.21595295509051 38.0 34.0 40.0 25.0 41.0 40 35.07908722362758 38.0 34.0 40.0 25.0 41.0 41 34.963985939091295 38.0 33.0 40.0 24.0 41.0 42 34.78806320838398 38.0 33.0 40.0 24.0 41.0 43 34.45558211504977 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 7.0 15 14.0 16 34.0 17 134.0 18 280.0 19 669.0 20 1447.0 21 2810.0 22 5232.0 23 9102.0 24 15061.0 25 23788.0 26 36019.0 27 52695.0 28 73954.0 29 98535.0 30 126807.0 31 156207.0 32 189471.0 33 230866.0 34 276884.0 35 333146.0 36 409237.0 37 519482.0 38 635484.0 39 607505.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.11448470711916 23.575597095831004 13.569565360228655 22.740352836821184 2 17.41489536449949 23.18223331909721 36.39875160156378 23.004119714839515 3 19.708479253589147 26.25568514077335 31.953060218798253 22.082775386839252 4 13.114701534215973 16.07427313643681 36.012957061664316 34.79806826768291 5 11.553993232366372 40.16925654587864 34.96848122474457 13.308268997010414 6 31.62174841486251 36.654607575807354 15.746929925424618 15.976714083905517 7 24.832090410328856 34.698064982423865 21.974361838430962 18.49548276881632 8 27.26814941358126 33.94384835244259 20.471710634383523 18.316291599592628 9 25.33946581687966 13.779611682381157 23.444764939715494 37.436157561023684 10 15.961575610236867 27.71799336377673 34.46854364466638 21.85188738132002 11 31.852741548671116 22.059778573540523 25.110286146062617 20.977193731725745 12 20.043496829725026 27.08262426492329 32.17312001051283 20.70075889483886 13 30.52470843325996 21.137409244718945 28.508873484674268 19.829008837346827 14 20.886205197279807 22.336607641512533 28.513236308682938 28.263950852524722 15 22.778750944511973 29.25541574953185 26.645605966030423 21.320227339925754 16 21.88395150957653 28.48387923387759 27.042964617760113 22.589204638785766 17 19.597831729031835 27.25332632478071 28.120056506455533 25.02878543973192 18 20.678603107855054 26.7413778376425 31.893399914583263 20.68661913991918 19 20.075928906994317 25.290292059528895 33.07038996024836 21.56338907322842 20 23.917290318341603 24.55305364828017 31.789112651532577 19.740543381845658 21 23.37028154669996 25.218489437892178 30.649758533460364 20.7614704819475 22 21.846000197115544 24.944998193107526 31.52069384670981 21.68830776306712 23 21.098459213508985 26.64487006800486 32.27259765432504 19.98407306416111 24 20.002102565787315 25.903820756266633 30.914208745359574 23.179867932586482 25 21.114123328624462 26.652702125562598 31.918604421958673 20.314570123854267 26 22.172765202536223 25.819429021978387 30.704031012845363 21.303774762640035 27 20.899057130654754 27.160997404645354 30.466414796806728 21.47353066789316 28 20.762548046913498 26.626420053221196 30.635408521961953 21.975623377903347 29 20.03726797858011 26.53556292913696 31.438141857485462 21.989027234797465 30 19.56555734419659 26.77160222083511 32.92334176549821 20.739498669470088 31 20.731009560103814 26.244541542100595 32.041814777095176 20.982634120700418 32 21.567699333092413 26.420342323992248 30.305594796149677 21.70636354676566 33 22.376214724531028 26.395847432570058 29.91496435493939 21.312973487959525 34 20.882078911922207 28.625066526495612 30.008134301389667 20.484720260192514 35 19.86165117119485 29.337862610466836 30.202989585728833 20.59749663260948 36 20.694109530536483 26.274214001774038 31.891744144025758 21.13993232366372 37 20.687880679391572 26.49829495055685 31.195742304280692 21.618082065770885 38 20.839186569861035 26.224172936036005 31.766615197608335 21.17002529649463 39 21.637872466243962 25.689937251552287 31.757311343999472 20.91487893820428 40 20.175143730083118 26.39437563651894 31.069667203258977 22.36081343013897 41 20.936351391307202 25.852570715200894 31.029718453300042 22.18135944019186 42 18.809448405006734 27.332908439830483 31.334012286868816 22.523630868293964 43 19.437984165051414 27.051663983705115 30.962541476395415 22.54781037484806 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 421.0 1 539.5 2 658.0 3 1677.5 4 2697.0 5 2697.0 6 4482.5 7 6268.0 8 6891.0 9 7514.0 10 11315.5 11 15117.0 12 15117.0 13 26762.0 14 38407.0 15 62108.0 16 85809.0 17 85311.5 18 84814.0 19 84814.0 20 90247.5 21 95681.0 22 81048.0 23 66415.0 24 73728.0 25 81041.0 26 81041.0 27 90189.5 28 99338.0 29 105689.0 30 112040.0 31 120708.0 32 129376.0 33 129376.0 34 139978.5 35 150581.0 36 163525.5 37 176470.0 38 183162.0 39 189854.0 40 189854.0 41 199855.5 42 209857.0 43 232836.0 44 255815.0 45 307595.5 46 359376.0 47 359376.0 48 363524.5 49 367673.0 50 337048.5 51 306424.0 52 286139.5 53 265855.0 54 265855.0 55 233163.5 56 200472.0 57 168514.0 58 136556.0 59 120482.5 60 104409.0 61 104409.0 62 92166.0 63 79923.0 64 70180.0 65 60437.0 66 51374.0 67 42311.0 68 42311.0 69 35593.5 70 28876.0 71 24068.5 72 19261.0 73 15069.5 74 10878.0 75 10878.0 76 8646.5 77 6415.0 78 5002.0 79 3589.0 80 2799.5 81 2010.0 82 2010.0 83 1507.5 84 1005.0 85 781.0 86 557.0 87 479.0 88 401.0 89 401.0 90 308.0 91 215.0 92 129.5 93 44.0 94 27.5 95 11.0 96 11.0 97 6.0 98 1.0 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3804875.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.66944806999662 #Duplication Level Percentage of deduplicated Percentage of total 1 70.70199378623686 28.04709070948347 2 14.452957279251585 11.466816764943008 3 5.847705445862705 6.95925742539861 4 2.9397018876611627 4.664654054953822 5 1.6061579367658778 3.185769943237346 6 0.9604449475975052 2.2860192583685914 7 0.6433303558304312 1.7864392099727413 8 0.46723724707258224 1.4828034967291186 9 0.3302132657288739 1.1789440197170002 >10 1.74939021657814 13.004252532183461 >50 0.18125603451140954 5.024340552318237 >100 0.10575469534320277 7.641117941008692 >500 0.0069619215588709905 1.8272467189556416 >1k 0.005690032039568469 4.62315274702199 >5k 6.024739806601909E-4 1.7123417411957376 >10k+ 6.024739806601909E-4 5.109752884512618 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 38693 1.0169322251059496 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38543 1.012989914254739 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 34520 0.9072571372252702 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 20788 0.5463517198331089 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14204 0.3733105555373041 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11991 0.3151483294457768 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 11809 0.31036499227964126 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 11418 0.3000887019941522 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10453 0.27472650218469724 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 9152 0.2405335260685305 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 8620 0.2265514635829035 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 8359 0.21969184270179704 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7860 0.20657708860343638 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6861 0.1803212983343737 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6314 0.16594500476362561 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6293 0.16539308124445615 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5977 0.15708794638457244 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5046 0.13261933703472517 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4897 0.12870330825585596 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4630 0.12168599494070108 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4293 0.11282893656164789 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3945 0.10368277538683926 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 2.628207234140412E-5 0.0 4 0.0 0.0 0.0 5.256414468280824E-5 0.0 5 0.0 0.0 0.0 5.256414468280824E-5 0.0 6 0.0 0.0 0.0 5.256414468280824E-5 0.0 7 0.0 0.0 0.0 5.256414468280824E-5 0.0 8 0.0 0.0 0.0 5.256414468280824E-5 0.0 9 0.0 0.0 0.0 7.884621702421236E-5 0.0 10 0.0 0.0 0.0 2.891027957554453E-4 0.0 11 2.628207234140412E-5 0.0 0.0 4.7307730214527416E-4 0.0 12 2.628207234140412E-5 0.0 0.0 7.884621702421235E-4 0.0 13 2.628207234140412E-5 0.0 0.0 9.724366766319524E-4 0.0 14 2.628207234140412E-5 0.0 0.0 0.001103847038338973 0.0 15 2.628207234140412E-5 0.0 0.0 0.0015243601958014389 0.0 16 5.256414468280824E-5 0.0 0.0 0.0023653865107263706 0.0 17 5.256414468280824E-5 0.0 0.0 0.003653208055455173 0.0 18 5.256414468280824E-5 0.0 0.0 0.004073721212917638 0.0 19 5.256414468280824E-5 0.0 0.0 0.004704490949111338 0.0 20 5.256414468280824E-5 0.0 0.0 0.005703209698084694 0.0 21 5.256414468280824E-5 0.0 0.0 0.007937185847104044 0.0 22 5.256414468280824E-5 0.0 0.0 0.012300009855777129 0.0 23 5.256414468280824E-5 0.0 0.0 0.02060514471566083 0.0 24 5.256414468280824E-5 0.0 0.0 0.032300666907585665 0.0 25 5.256414468280824E-5 0.0 0.0 0.03866092841420546 0.0 26 5.256414468280824E-5 0.0 0.0 0.04617760110384704 0.0 27 5.256414468280824E-5 0.0 0.0 0.1026840566378659 0.0 28 5.256414468280824E-5 0.0 0.0 0.1657347481848944 0.0 29 5.256414468280824E-5 0.0 0.0 0.23632839449390586 0.0 30 5.256414468280824E-5 0.0 0.0 0.3758073524097375 0.0 31 5.256414468280824E-5 0.0 0.0 0.5970761194520188 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8560 0.0 29.284462 1 GTATTGG 1090 0.0 23.591745 1 ATTGGAC 1045 0.0 23.014355 3 TTGGACC 1835 0.0 20.264305 4 TAGTGCG 130 3.274181E-11 19.923077 7 GGACCCT 1955 0.0 18.547314 6 TGGACCC 1975 0.0 18.546837 5 TATTGGA 1495 0.0 17.200668 2 CGTCTGT 950 0.0 16.942106 34 GTATCAA 15310 0.0 16.663294 2 TACGGGT 80 3.3851352E-4 16.1875 4 GACCCTC 2105 0.0 15.995249 7 ACGTTTA 245 0.0 15.857142 26 CCGTCGA 95 7.066533E-5 15.578948 9 TAGTACG 190 2.7284841E-11 15.578948 4 CGCGAAT 85 5.368196E-4 15.235294 35 TTATGCG 165 1.6485501E-8 14.575757 4 CGAACGA 115 2.2123879E-5 14.478261 16 TCTATAC 375 0.0 14.306667 3 CGCGATA 105 1.6572184E-4 14.095238 14 >>END_MODULE